Sed0008849 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCCATCTTCAATCTCTGCAACTCAAATCCAACTTCCCATTTTCTCCTCTCTCATCCATGGCTTCCTCCTCCGCCTTCGTCTTCTTCGTCCTCTTCGCCCTGGTCGCCGGCTCCTTAGGCCAAGCTCCGGCCGCCGCACCGGCCTCCTCTCCAACCAAGCCGCCACCTGCCTCCTCTCCGAAATCCGCTCCGCCTCCGGCTTCAACGCCATCTCCATCCCTTGCGCCGCAGACCGCTGCTCCATCTCCTTCCACTGTAACTCCACCGCCGGCTTCGTCGCCAGCTTCTTCTCCACCGGCTCCACCTACAGCTCCATCGGACTCTCCGGCCTCCATTCCGCCAACAACACCTTCGATCGCAAGTCCTCCTGCTCAGGCTCCCTCGCCGGCCTCAACTCCCGGCAATGGCGCTGCCGTGAACAGAATCGCAGCCTCCGGATCTGTCATCGCGGCTGTAATTTCCTTCGCTCTTCTCCTCTAAATGCGATCGGTCTCGCAGATCTTAGGGTTTCGTCATCCGCATTACTCGTAATTTCCTTAGTGTATTATTTATTCCACTCTTATTTTTGGTGTATTTAGGATGAATCTAGAGGATTTTAGACGCTGGCCGCCTGTGATGATCATTATTGTTATTTATTTGGATTTCTAGGTTTTTACTGTGCTTGAATCGATTTGCTTTTGCCGTTACTAATTAGATCTCATTTTATCTCTTACTTATTCTGCCGGATCTCTGCTTTTCCTTTCTCTTCTCCGGCTGAACTCCGCGATGGCGGCGGCGAAGGTACAGAACTGAACTGTAGTAATTCTTTAAGCTTTTTAGAGATAATAATTTCATGGATGGTGATAACAATGGAGTCGAATACAGCTGTAATTATTGGTGTTTTTTTTTTTAATTTTATTTGTAAAAGAATGATAATGGGGTTTCATGGTGAAAAAAGGAACGAAAACAAATGCAAAGGTATTGTAGGCTGTCGCTTTGTGTGCGCCTATGCTTTCCCCCATGTGCCGCTCAACGGTACTTTCTCTTTTTCAAAAGAAAACGCTAATGGGTTCCATTTGGGCCCAATTAGCCCATATCGTTTCTCTACATTCATGGAATCTGATTTCTGGTTTTTTTCTTTTTTCTTTTTTTATATGATTAGAAAATGAGGGAGGTTTTCATGTTTTGATCAGAGCATAATTCATAGGATGAAGTATGAGTTCAATTCCTATGGAGTATGGAATATGATTTAGTGATAAAAAATTATTGTAATAAAGCAACCAATAAG CTCCATCTTCAATCTCTGCAACTCAAATCCAACTTCCCATTTTCTCCTCTCTCATCCATGGCTTCCTCCTCCGCCTTCGTCTTCTTCGTCCTCTTCGCCCTGGTCGCCGGCTCCTTAGGCCAAGCTCCGGCCGCCGCACCGGCCTCCTCTCCAACCAAGCCGCCACCTGCCTCCTCTCCGAAATCCGCTCCGCCTCCGGCTTCAACGCCATCTCCATCCCTTGCGCCGCAGACCGCTGCTCCATCTCCTTCCACTGTAACTCCACCGCCGGCTTCGTCGCCAGCTTCTTCTCCACCGGCTCCACCTACAGCTCCATCGGACTCTCCGGCCTCCATTCCGCCAACAACACCTTCGATCGCAAGTCCTCCTGCTCAGGCTCCCTCGCCGGCCTCAACTCCCGGCAATGGCGCTGCCGTGAACAGAATCGCAGCCTCCGGATCTGTCATCGCGGCTGTAATTTCCTTCGCTCTTCTCCTCTAAATGCGATCGGTCTCGCAGATCTTAGGGTTTCGTCATCCGCATTACTCGTAATTTCCTTAGTGTATTATTTATTCCACTCTTATTTTTGGTGTATTTAGGATGAATCTAGAGGATTTTAGACGCTGGCCGCCTGTGATGATCATTATTGTTATTTATTTGGATTTCTAGGTTTTTACTGTGCTTGAATCGATTTGCTTTTGCCGTTACTAATTAGATCTCATTTTATCTCTTACTTATTCTGCCGGATCTCTGCTTTTCCTTTCTCTTCTCCGGCTGAACTCCGCGATGGCGGCGGCGAAGGTACAGAACTGAACTGTAGTAATTCTTTAAGCTTTTTAGAGATAATAATTTCATGGATGGTGATAACAATGGAGTCGAATACAGCTGTAATTATTGGTGTTTTTTTTTTTAATTTTATTTGTAAAAGAATGATAATGGGGTTTCATGGTGAAAAAAGGAACGAAAACAAATGCAAAGGTATTGTAGGCTGTCGCTTTGTGTGCGCCTATGCTTTCCCCCATGTGCCGCTCAACGGTACTTTCTCTTTTTCAAAAGAAAACGCTAATGGGTTCCATTTGGGCCCAATTAGCCCATATCGTTTCTCTACATTCATGGAATCTGATTTCTGGTTTTTTTCTTTTTTCTTTTTTTATATGATTAGAAAATGAGGGAGGTTTTCATGTTTTGATCAGAGCATAATTCATAGGATGAAGTATGAGTTCAATTCCTATGGAGTATGGAATATGATTTAGTGATAAAAAATTATTGTAATAAAGCAACCAATAAG ATGGCTTCCTCCTCCGCCTTCGTCTTCTTCGTCCTCTTCGCCCTGGTCGCCGGCTCCTTAGGCCAAGCTCCGGCCGCCGCACCGGCCTCCTCTCCAACCAAGCCGCCACCTGCCTCCTCTCCGAAATCCGCTCCGCCTCCGGCTTCAACGCCATCTCCATCCCTTGCGCCGCAGACCGCTGCTCCATCTCCTTCCACTGTAACTCCACCGCCGGCTTCGTCGCCAGCTTCTTCTCCACCGGCTCCACCTACAGCTCCATCGGACTCTCCGGCCTCCATTCCGCCAACAACACCTTCGATCGCAAGTCCTCCTGCTCAGGCTCCCTCGCCGGCCTCAACTCCCGGCAATGGCGCTGCCGTGAACAGAATCGCAGCCTCCGGATCTGTCATCGCGGCTGTAATTTCCTTCGCTCTTCTCCTCTAA MASSSAFVFFVLFALVAGSLGQAPAAAPASSPTKPPPASSPKSAPPPASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL Homology
BLAST of Sed0008849 vs. NCBI nr
Match: XP_022937303.1 (lysine-rich arabinogalactan protein 19-like [Cucurbita moschata] >XP_023534813.1 lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 154.5 bits (389), Expect = 7.0e-34 Identity = 112/146 (76.71%), Postives = 119/146 (81.51%), Query Frame = 0
BLAST of Sed0008849 vs. NCBI nr
Match: XP_018833931.2 (classical arabinogalactan protein 10-like [Juglans regia] >KAF5468121.1 hypothetical protein F2P56_012300 [Juglans regia]) HSP 1 Score: 85.1 bits (209), Expect = 5.2e-13 Identity = 74/145 (51.03%), Postives = 99/145 (68.28%), Query Frame = 0
BLAST of Sed0008849 vs. NCBI nr
Match: XP_040997605.1 (classical arabinogalactan protein 10-like [Juglans microcarpa x Juglans regia]) HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12 Identity = 75/147 (51.02%), Postives = 102/147 (69.39%), Query Frame = 0
BLAST of Sed0008849 vs. NCBI nr
Match: XP_015885267.2 (classical arabinogalactan protein 5 [Ziziphus jujuba]) HSP 1 Score: 82.0 bits (201), Expect = 4.4e-12 Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = 0
BLAST of Sed0008849 vs. NCBI nr
Match: KAF8404655.1 (hypothetical protein HHK36_009543 [Tetracentron sinense]) HSP 1 Score: 75.9 bits (185), Expect = 3.2e-10 Identity = 73/136 (53.68%), Postives = 89/136 (65.44%), Query Frame = 0
BLAST of Sed0008849 vs. ExPASy TrEMBL
Match: A0A6J1FFR5 (lysine-rich arabinogalactan protein 19-like OS=Cucurbita moschata OX=3662 GN=LOC111443629 PE=4 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 3.4e-34 Identity = 112/146 (76.71%), Postives = 119/146 (81.51%), Query Frame = 0
BLAST of Sed0008849 vs. ExPASy TrEMBL
Match: A0A2I4FQK5 (classical arabinogalactan protein 10-like OS=Juglans regia OX=51240 GN=LOC109001197 PE=4 SV=2) HSP 1 Score: 85.1 bits (209), Expect = 2.5e-13 Identity = 74/145 (51.03%), Postives = 99/145 (68.28%), Query Frame = 0
BLAST of Sed0008849 vs. ExPASy TrEMBL
Match: A0A6P4AHL3 (classical arabinogalactan protein 5 OS=Ziziphus jujuba OX=326968 GN=LOC107420744 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12 Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = 0
BLAST of Sed0008849 vs. ExPASy TrEMBL
Match: A0A5N6RKA1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017895 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 9.3e-08 Identity = 71/153 (46.41%), Postives = 98/153 (64.05%), Query Frame = 0
BLAST of Sed0008849 vs. ExPASy TrEMBL
Match: A0A4S4ECI5 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_012096 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 2.1e-07 Identity = 71/139 (51.08%), Postives = 88/139 (63.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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