Sed0008849 (gene) Chayote v1

Overview
NameSed0008849
Typegene
OrganismSechium edule (Chayote v1)
DescriptionClassical arabinogalactan protein
LocationLG05: 29564688 .. 29565954 (-)
RNA-Seq ExpressionSed0008849
SyntenySed0008849
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCATCTTCAATCTCTGCAACTCAAATCCAACTTCCCATTTTCTCCTCTCTCATCCATGGCTTCCTCCTCCGCCTTCGTCTTCTTCGTCCTCTTCGCCCTGGTCGCCGGCTCCTTAGGCCAAGCTCCGGCCGCCGCACCGGCCTCCTCTCCAACCAAGCCGCCACCTGCCTCCTCTCCGAAATCCGCTCCGCCTCCGGCTTCAACGCCATCTCCATCCCTTGCGCCGCAGACCGCTGCTCCATCTCCTTCCACTGTAACTCCACCGCCGGCTTCGTCGCCAGCTTCTTCTCCACCGGCTCCACCTACAGCTCCATCGGACTCTCCGGCCTCCATTCCGCCAACAACACCTTCGATCGCAAGTCCTCCTGCTCAGGCTCCCTCGCCGGCCTCAACTCCCGGCAATGGCGCTGCCGTGAACAGAATCGCAGCCTCCGGATCTGTCATCGCGGCTGTAATTTCCTTCGCTCTTCTCCTCTAAATGCGATCGGTCTCGCAGATCTTAGGGTTTCGTCATCCGCATTACTCGTAATTTCCTTAGTGTATTATTTATTCCACTCTTATTTTTGGTGTATTTAGGATGAATCTAGAGGATTTTAGACGCTGGCCGCCTGTGATGATCATTATTGTTATTTATTTGGATTTCTAGGTTTTTACTGTGCTTGAATCGATTTGCTTTTGCCGTTACTAATTAGATCTCATTTTATCTCTTACTTATTCTGCCGGATCTCTGCTTTTCCTTTCTCTTCTCCGGCTGAACTCCGCGATGGCGGCGGCGAAGGTACAGAACTGAACTGTAGTAATTCTTTAAGCTTTTTAGAGATAATAATTTCATGGATGGTGATAACAATGGAGTCGAATACAGCTGTAATTATTGGTGTTTTTTTTTTTAATTTTATTTGTAAAAGAATGATAATGGGGTTTCATGGTGAAAAAAGGAACGAAAACAAATGCAAAGGTATTGTAGGCTGTCGCTTTGTGTGCGCCTATGCTTTCCCCCATGTGCCGCTCAACGGTACTTTCTCTTTTTCAAAAGAAAACGCTAATGGGTTCCATTTGGGCCCAATTAGCCCATATCGTTTCTCTACATTCATGGAATCTGATTTCTGGTTTTTTTCTTTTTTCTTTTTTTATATGATTAGAAAATGAGGGAGGTTTTCATGTTTTGATCAGAGCATAATTCATAGGATGAAGTATGAGTTCAATTCCTATGGAGTATGGAATATGATTTAGTGATAAAAAATTATTGTAATAAAGCAACCAATAAG

mRNA sequence

CTCCATCTTCAATCTCTGCAACTCAAATCCAACTTCCCATTTTCTCCTCTCTCATCCATGGCTTCCTCCTCCGCCTTCGTCTTCTTCGTCCTCTTCGCCCTGGTCGCCGGCTCCTTAGGCCAAGCTCCGGCCGCCGCACCGGCCTCCTCTCCAACCAAGCCGCCACCTGCCTCCTCTCCGAAATCCGCTCCGCCTCCGGCTTCAACGCCATCTCCATCCCTTGCGCCGCAGACCGCTGCTCCATCTCCTTCCACTGTAACTCCACCGCCGGCTTCGTCGCCAGCTTCTTCTCCACCGGCTCCACCTACAGCTCCATCGGACTCTCCGGCCTCCATTCCGCCAACAACACCTTCGATCGCAAGTCCTCCTGCTCAGGCTCCCTCGCCGGCCTCAACTCCCGGCAATGGCGCTGCCGTGAACAGAATCGCAGCCTCCGGATCTGTCATCGCGGCTGTAATTTCCTTCGCTCTTCTCCTCTAAATGCGATCGGTCTCGCAGATCTTAGGGTTTCGTCATCCGCATTACTCGTAATTTCCTTAGTGTATTATTTATTCCACTCTTATTTTTGGTGTATTTAGGATGAATCTAGAGGATTTTAGACGCTGGCCGCCTGTGATGATCATTATTGTTATTTATTTGGATTTCTAGGTTTTTACTGTGCTTGAATCGATTTGCTTTTGCCGTTACTAATTAGATCTCATTTTATCTCTTACTTATTCTGCCGGATCTCTGCTTTTCCTTTCTCTTCTCCGGCTGAACTCCGCGATGGCGGCGGCGAAGGTACAGAACTGAACTGTAGTAATTCTTTAAGCTTTTTAGAGATAATAATTTCATGGATGGTGATAACAATGGAGTCGAATACAGCTGTAATTATTGGTGTTTTTTTTTTTAATTTTATTTGTAAAAGAATGATAATGGGGTTTCATGGTGAAAAAAGGAACGAAAACAAATGCAAAGGTATTGTAGGCTGTCGCTTTGTGTGCGCCTATGCTTTCCCCCATGTGCCGCTCAACGGTACTTTCTCTTTTTCAAAAGAAAACGCTAATGGGTTCCATTTGGGCCCAATTAGCCCATATCGTTTCTCTACATTCATGGAATCTGATTTCTGGTTTTTTTCTTTTTTCTTTTTTTATATGATTAGAAAATGAGGGAGGTTTTCATGTTTTGATCAGAGCATAATTCATAGGATGAAGTATGAGTTCAATTCCTATGGAGTATGGAATATGATTTAGTGATAAAAAATTATTGTAATAAAGCAACCAATAAG

Coding sequence (CDS)

ATGGCTTCCTCCTCCGCCTTCGTCTTCTTCGTCCTCTTCGCCCTGGTCGCCGGCTCCTTAGGCCAAGCTCCGGCCGCCGCACCGGCCTCCTCTCCAACCAAGCCGCCACCTGCCTCCTCTCCGAAATCCGCTCCGCCTCCGGCTTCAACGCCATCTCCATCCCTTGCGCCGCAGACCGCTGCTCCATCTCCTTCCACTGTAACTCCACCGCCGGCTTCGTCGCCAGCTTCTTCTCCACCGGCTCCACCTACAGCTCCATCGGACTCTCCGGCCTCCATTCCGCCAACAACACCTTCGATCGCAAGTCCTCCTGCTCAGGCTCCCTCGCCGGCCTCAACTCCCGGCAATGGCGCTGCCGTGAACAGAATCGCAGCCTCCGGATCTGTCATCGCGGCTGTAATTTCCTTCGCTCTTCTCCTCTAA

Protein sequence

MASSSAFVFFVLFALVAGSLGQAPAAAPASSPTKPPPASSPKSAPPPASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL
Homology
BLAST of Sed0008849 vs. NCBI nr
Match: XP_022937303.1 (lysine-rich arabinogalactan protein 19-like [Cucurbita moschata] >XP_023534813.1 lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.5 bits (389), Expect = 7.0e-34
Identity = 112/146 (76.71%), Postives = 119/146 (81.51%), Query Frame = 0

Query: 1   MASSSAFVFFVLFALVAGSLGQAPAAAPASSPTKPPPASSPKSAP------PPASTPSPS 60
           MASSSAFVF VL AL+AGSLGQAP AAPASSPTK PP SSPKSAP      PPAS+PS S
Sbjct: 1   MASSSAFVFVVLVALIAGSLGQAPGAAPASSPTKSPPVSSPKSAPSPTVATPPASSPSSS 60

Query: 61  LAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPPAQAPSPASTP 120
           LAP  AAPSPST T PPA SPA+SPPAPPTAPS+SPA  P   PSI++PPA APSPASTP
Sbjct: 61  LAPSGAAPSPSTGTSPPAMSPATSPPAPPTAPSESPAQTPVPNPSISTPPALAPSPASTP 120

Query: 121 GNGAAVNRIAASGSVIAAVISFALLL 141
           GNG AVNRIA SGS+I AVIS ALLL
Sbjct: 121 GNGGAVNRIAVSGSIIVAVISSALLL 146

BLAST of Sed0008849 vs. NCBI nr
Match: XP_018833931.2 (classical arabinogalactan protein 10-like [Juglans regia] >KAF5468121.1 hypothetical protein F2P56_012300 [Juglans regia])

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-13
Identity = 74/145 (51.03%), Postives = 99/145 (68.28%), Query Frame = 0

Query: 1   MASSSAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPP----ASTPSPSL 60
           MA S      +LFALVAGS   QAP  AP  SPTK PPASSPK+APPP      TPSP++
Sbjct: 1   MACSGFVWLMLLFALVAGSAFAQAPGVAPTGSPTKSPPASSPKAAPPPTHTSTPTPSPTM 60

Query: 61  APQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPPAQAPSPASTPG 120
           +P  +AP+P++   PP  +P+SSPPAPPT    SPAS P   PSI++PP+ + SP  +PG
Sbjct: 61  SPPASAPAPTSSATPPTGAPSSSPPAPPT----SPASAPGLGPSISAPPS-SESPTGSPG 120

Query: 121 NGAAVNRIAASGSVIAAVISFALLL 141
           NGAA+N ++ +GSV + +++  LL+
Sbjct: 121 NGAALNTVSVTGSVASVILAATLLM 140

BLAST of Sed0008849 vs. NCBI nr
Match: XP_040997605.1 (classical arabinogalactan protein 10-like [Juglans microcarpa x Juglans regia])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 75/147 (51.02%), Postives = 102/147 (69.39%), Query Frame = 0

Query: 1   MASSSAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPPA--STPSPS--- 60
           MA S      +LFALVAGS   QAP  AP  SPTK PPASSPK+APPPA  STP+PS   
Sbjct: 1   MACSGFVWLMLLFALVAGSAFAQAPGGAPTGSPTKSPPASSPKAAPPPAHISTPTPSPTP 60

Query: 61  -LAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPPAQAPSPAST 120
            ++P  +AP+P++   PP  +P+SSPPAPPT+   +P S P +  SI+SPP+ + SPA +
Sbjct: 61  TMSPPASAPAPTSAATPPTGAPSSSPPAPPTS---TPTSAPGSGTSISSPPS-SESPAGS 120

Query: 121 PGNGAAVNRIAASGSVIAAVISFALLL 141
           PGNGAA+N ++ +GSV + +++  LL+
Sbjct: 121 PGNGAALNTVSVTGSVASVILAATLLM 143

BLAST of Sed0008849 vs. NCBI nr
Match: XP_015885267.2 (classical arabinogalactan protein 5 [Ziziphus jujuba])

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-12
Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = 0

Query: 5   SAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKS-APPPASTPSPSLAPQTAAP 64
           SAFV F +FALVAGS L QAP AAP +SPTK PPASSP   A PPA TP+P+++P T++P
Sbjct: 4   SAFVIFTVFALVAGSALAQAPTAAPTASPTKSPPASSPTPVASPPAKTPTPTVSPPTSSP 63

Query: 65  ------------SPSTVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPPAQAPSP 124
                       SPS    PPASSP  SPPAPPT+    P+S  P  PSI+  P Q  SP
Sbjct: 64  PALSPTPSAPASSPSATVSPPASSPTGSPPAPPTS---GPSSGVP--PSISQVPTQ--SP 123

Query: 125 ASTPGNGAAVNRIAASGSVIAAVISFALLL 141
            S PGNGAA+NR+A +GS+ A V + ++LL
Sbjct: 124 TSPPGNGAALNRVAGAGSLAAIVFAASVLL 146

BLAST of Sed0008849 vs. NCBI nr
Match: KAF8404655.1 (hypothetical protein HHK36_009543 [Tetracentron sinense])

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-10
Identity = 73/136 (53.68%), Postives = 89/136 (65.44%), Query Frame = 0

Query: 8   VFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPPASTPSPSLAPQTAAPSPST 67
           V  ++ ALV GS LGQAP AAP ++PT+ PPASSP + PPP+ +PSP   P  ++P+P+T
Sbjct: 7   VVLMMLALVTGSVLGQAPGAAPRAAPTQSPPASSPPATPPPSPSPSPVTTPPVSSPAPTT 66

Query: 68  VTPPPASSPAS--SPPAPPTAPSDSPASIPPTTPSIASPPAQAPSPASTPGNGAAVNRIA 127
             P  A SP S  SPPAPPTA   SP    P+   I +PPA  P   STP NGAA+NRIA
Sbjct: 67  TPPTSAPSPGSVQSPPAPPTA---SPMPSSPSPSGITAPPAGGP---STPTNGAALNRIA 126

Query: 128 ASGSVIAAVISFALLL 141
            SGS   AV + ALLL
Sbjct: 127 ISGSAFVAVFAAALLL 136

BLAST of Sed0008849 vs. ExPASy TrEMBL
Match: A0A6J1FFR5 (lysine-rich arabinogalactan protein 19-like OS=Cucurbita moschata OX=3662 GN=LOC111443629 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.4e-34
Identity = 112/146 (76.71%), Postives = 119/146 (81.51%), Query Frame = 0

Query: 1   MASSSAFVFFVLFALVAGSLGQAPAAAPASSPTKPPPASSPKSAP------PPASTPSPS 60
           MASSSAFVF VL AL+AGSLGQAP AAPASSPTK PP SSPKSAP      PPAS+PS S
Sbjct: 1   MASSSAFVFVVLVALIAGSLGQAPGAAPASSPTKSPPVSSPKSAPSPTVATPPASSPSSS 60

Query: 61  LAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPPAQAPSPASTP 120
           LAP  AAPSPST T PPA SPA+SPPAPPTAPS+SPA  P   PSI++PPA APSPASTP
Sbjct: 61  LAPSGAAPSPSTGTSPPAMSPATSPPAPPTAPSESPAQTPVPNPSISTPPALAPSPASTP 120

Query: 121 GNGAAVNRIAASGSVIAAVISFALLL 141
           GNG AVNRIA SGS+I AVIS ALLL
Sbjct: 121 GNGGAVNRIAVSGSIIVAVISSALLL 146

BLAST of Sed0008849 vs. ExPASy TrEMBL
Match: A0A2I4FQK5 (classical arabinogalactan protein 10-like OS=Juglans regia OX=51240 GN=LOC109001197 PE=4 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 2.5e-13
Identity = 74/145 (51.03%), Postives = 99/145 (68.28%), Query Frame = 0

Query: 1   MASSSAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPP----ASTPSPSL 60
           MA S      +LFALVAGS   QAP  AP  SPTK PPASSPK+APPP      TPSP++
Sbjct: 1   MACSGFVWLMLLFALVAGSAFAQAPGVAPTGSPTKSPPASSPKAAPPPTHTSTPTPSPTM 60

Query: 61  APQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPPAQAPSPASTPG 120
           +P  +AP+P++   PP  +P+SSPPAPPT    SPAS P   PSI++PP+ + SP  +PG
Sbjct: 61  SPPASAPAPTSSATPPTGAPSSSPPAPPT----SPASAPGLGPSISAPPS-SESPTGSPG 120

Query: 121 NGAAVNRIAASGSVIAAVISFALLL 141
           NGAA+N ++ +GSV + +++  LL+
Sbjct: 121 NGAALNTVSVTGSVASVILAATLLM 140

BLAST of Sed0008849 vs. ExPASy TrEMBL
Match: A0A6P4AHL3 (classical arabinogalactan protein 5 OS=Ziziphus jujuba OX=326968 GN=LOC107420744 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12
Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = 0

Query: 5   SAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKS-APPPASTPSPSLAPQTAAP 64
           SAFV F +FALVAGS L QAP AAP +SPTK PPASSP   A PPA TP+P+++P T++P
Sbjct: 4   SAFVIFTVFALVAGSALAQAPTAAPTASPTKSPPASSPTPVASPPAKTPTPTVSPPTSSP 63

Query: 65  ------------SPSTVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPPAQAPSP 124
                       SPS    PPASSP  SPPAPPT+    P+S  P  PSI+  P Q  SP
Sbjct: 64  PALSPTPSAPASSPSATVSPPASSPTGSPPAPPTS---GPSSGVP--PSISQVPTQ--SP 123

Query: 125 ASTPGNGAAVNRIAASGSVIAAVISFALLL 141
            S PGNGAA+NR+A +GS+ A V + ++LL
Sbjct: 124 TSPPGNGAALNRVAGAGSLAAIVFAASVLL 146

BLAST of Sed0008849 vs. ExPASy TrEMBL
Match: A0A5N6RKA1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017895 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.3e-08
Identity = 71/153 (46.41%), Postives = 98/153 (64.05%), Query Frame = 0

Query: 5   SAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPPASTP---------SPS 64
           S+FV  +L ALVA S L Q P AAP +SPTK PP S+P +A PP + P         SP+
Sbjct: 4   SSFVGLMLVALVASSALAQGPQAAPTASPTKSPPVSTPPTAAPPTAAPPTPTSSPTSSPT 63

Query: 65  LAPQTAAPSPSTVTPPPASSPASSPPA--PPTAPSDSPASIPPTTPSIASPPAQ-----A 124
           ++P ++ P+P+  TPP +S  ASSP A  PP  P+ SP   P + PS ++PP+       
Sbjct: 64  VSPPSSTPAPTIATPPSSSPTASSPTASSPPAPPTSSP---PESGPSASTPPSMIGGPPG 123

Query: 125 PSPASTPGNGAAVNRIAASGSVIAAVISFALLL 141
            SP STPG+ AA+NR+AA+GSV +A+++ ALLL
Sbjct: 124 ASPTSTPGSDAALNRVAATGSVASAILAAALLL 153

BLAST of Sed0008849 vs. ExPASy TrEMBL
Match: A0A4S4ECI5 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_012096 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-07
Identity = 71/139 (51.08%), Postives = 88/139 (63.31%), Query Frame = 0

Query: 5   SAFVFFVLFALVAGSLGQAPAAAPASSPTKPPPASSPKSAPPPASTPSPSLAPQTAAPSP 64
           S+ V  ++FALVAGS   A A APA+SPTK P AS PK+A  P+  P+PS+         
Sbjct: 4   SSVVVVLMFALVAGS---AIAQAPAASPTKSPMASPPKAAETPSVAPTPSV--------- 63

Query: 65  STVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPPAQAP------SPASTPGNGA 124
                PP SSP SSPPAPPTAP+ +     PTT SIAS P Q+P      SP++TP +GA
Sbjct: 64  ----KPPTSSPKSSPPAPPTAPAST-----PTTSSIASTPVQSPSATPSQSPSATPKSGA 119

Query: 125 AVNRIAASGSVIAAVISFA 138
           AVNR+A +GS  AAV+ FA
Sbjct: 124 AVNRVAVTGS--AAVVFFA 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022937303.17.0e-3476.71lysine-rich arabinogalactan protein 19-like [Cucurbita moschata] >XP_023534813.1... [more]
XP_018833931.25.2e-1351.03classical arabinogalactan protein 10-like [Juglans regia] >KAF5468121.1 hypothet... [more]
XP_040997605.12.6e-1251.02classical arabinogalactan protein 10-like [Juglans microcarpa x Juglans regia][more]
XP_015885267.24.4e-1254.00classical arabinogalactan protein 5 [Ziziphus jujuba][more]
KAF8404655.13.2e-1053.68hypothetical protein HHK36_009543 [Tetracentron sinense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FFR53.4e-3476.71lysine-rich arabinogalactan protein 19-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A2I4FQK52.5e-1351.03classical arabinogalactan protein 10-like OS=Juglans regia OX=51240 GN=LOC109001... [more]
A0A6P4AHL32.1e-1254.00classical arabinogalactan protein 5 OS=Ziziphus jujuba OX=326968 GN=LOC107420744... [more]
A0A5N6RKA19.3e-0846.41Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017895 PE=4 SV=1[more]
A0A4S4ECI52.1e-0751.08Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0120... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..119
NoneNo IPR availablePANTHERPTHR36321:SF3CLASSICAL ARABINOGALACTAN PROTEIN 10-RELATEDcoord: 1..139
IPR044959Classical arabinogalactan proteinPANTHERPTHR36321CLASSICAL ARABINOGALACTAN PROTEIN 9coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0008849.1Sed0008849.1mRNA