Sed0008686 (gene) Chayote v1

Overview
NameSed0008686
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationLG01: 19605383 .. 19606288 (+)
RNA-Seq ExpressionSed0008686
SyntenySed0008686
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATTTATTCATTCATATTTGGAAAATCTAAGACGGTTAATTATTTTCTTTTTTTCCAGTTAATTTGACTAATTTCATGTGTGGCGTCTCTAGACGCCATCTTATAGGCCAAATAAAACGTTCTTAAACAGACCCATTTTAACAAATTGTTTAAAAAAAAAGACCCCTTCCCATAATTTACTCAGCACATTCATTATCTTGTACCAAAAAGAAGTTGACTACAAAAACCTAAAGAACTTTAGTTATCTATGTTTTGTCTAACTCTAAAGGCCAATCGAGGTAAATTGGATCCTTAAGCTAGAGCTTGTGTCTTTTTGGGCTATCCTACAATTATTCAAGCTCAACAAGACCTTGTATCAAGGGATGTTATGTTCAATGAGACTGAATTCCCTTATTACTCTTTTGGTCTACATGACCAATTCCTCTACTGATTCCATGTTCTCAGATTTAGTGTTACAAAGACGAATTTCTAGGACTCAATAAGACATATCTCATGCTAAGACTTCTAGCAGTGAACCATCTACACTAAGTGATACTATATCTATTATCAGACATGATTATTTGCCTTCCACAGTTGCAGACCATGAAAATTCGAAAGTTCCTAAGATCGAACAGGAATATATGGCCTCCCCTATTAACAATAATGTCAATAACTCACCTTCCATTATTGCTAGCCCTACTAGCTCAGTTATTACACAAGCTCTAGAACAATATAATCATTCTCCAGTAAATGATATTATTGTTGAGACAATTACTGCTTTAGAAGCTTTGCCAACAGAAAATACAGCCCTTGTTCGCCGCTCCACTAGAGCTCATCAACCCCTGTCCTTTTTAAAGGACTATCATTGCCATTTGGTTACTACAACAACTCCAAAGTCTACCACTTATGTGCATCCTACTTGA

mRNA sequence

ATGCAATTTATTCATTCATATTTGGAAAATCTAAGACGACATGATTATTTGCCTTCCACAGTTGCAGACCATGAAAATTCGAAAGTTCCTAAGATCGAACAGGAATATATGGCCTCCCCTATTAACAATAATGTCAATAACTCACCTTCCATTATTGCTAGCCCTACTAGCTCAGTTATTACACAAGCTCTAGAACAATATAATCATTCTCCAGTAAATGATATTATTGTTGAGACAATTACTGCTTTAGAAGCTTTGCCAACAGAAAATACAGCCCTTGTTCGCCGCTCCACTAGAGCTCATCAACCCCTGTCCTTTTTAAAGGACTATCATTGCCATTTGGTTACTACAACAACTCCAAAGTCTACCACTTATGTGCATCCTACTTGA

Coding sequence (CDS)

ATGCAATTTATTCATTCATATTTGGAAAATCTAAGACGACATGATTATTTGCCTTCCACAGTTGCAGACCATGAAAATTCGAAAGTTCCTAAGATCGAACAGGAATATATGGCCTCCCCTATTAACAATAATGTCAATAACTCACCTTCCATTATTGCTAGCCCTACTAGCTCAGTTATTACACAAGCTCTAGAACAATATAATCATTCTCCAGTAAATGATATTATTGTTGAGACAATTACTGCTTTAGAAGCTTTGCCAACAGAAAATACAGCCCTTGTTCGCCGCTCCACTAGAGCTCATCAACCCCTGTCCTTTTTAAAGGACTATCATTGCCATTTGGTTACTACAACAACTCCAAAGTCTACCACTTATGTGCATCCTACTTGA

Protein sequence

MQFIHSYLENLRRHDYLPSTVADHENSKVPKIEQEYMASPINNNVNNSPSIIASPTSSVITQALEQYNHSPVNDIIVETITALEALPTENTALVRRSTRAHQPLSFLKDYHCHLVTTTTPKSTTYVHPT
Homology
[Close]
BLAST of Sed0008686 vs. ExPASy TrEMBL
Match: A0A5D3E4Z5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001450 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.5e-04
Identity = 46/127 (36.22%), Postives = 61/127 (48.03%), Query Frame = 0 

Query: 5   HSYLENLRRHDYLPSTVADHENSKVPKIEQEYMASPI--NNNVNNSPSIIASPTSSVITQ 64
           HS LEN      LP  + D        I  + +A PI  N N ++SP I A         
Sbjct: 94  HSELENAFHDLVLPIPILD------THITTQTIAEPIIENPNTDSSPEIQA--------- 153

Query: 65  ALEQYNHSPVNDIIVETITALEALPTENTALVRRSTRAHQPLSFLKDYHCHLVT-TTTPK 124
              + + +  N I     T    +P  N  + R+STR H+PL+FLKDYHCHL+T  + PK
Sbjct: 154 ---EQDATNANGIPNMANTEHTTVPC-NLPMPRKSTRQHKPLNFLKDYHCHLLTHGSPPK 201

Query: 125 STTYVHP 129
            TT  HP
Sbjct: 214 DTTSYHP 201

The following BLAST results are available for this feature:
BLAST of Sed0008686 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0008686 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0008686 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E4Z57.5e-0436.22Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of Sed0008686 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0008686.1Sed0008686.1mRNA