Sed0008393 (gene) Chayote v1

Overview


Name	Sed0008393
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RAB6-interacting golgin
Location	LG03: 12782121 .. 12786017 (-)
RNA-Seq Expression	Sed0008393
Synteny	Sed0008393

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATTTTTACTTTTAAAAACGACTCTCATTTCTAACGATTCATTTTTAATCATTCATTTATAACTACTCAATCATTTCTAACCACCCATTTTTAATCATTCCTTTCAAATCCATCAAAATAATTCATTTTTAACCACTCATTTTTAATCATTTTTTAACTACTAAAAATAACTACTCATTTTAAATCTACATCCAAATAAAATTTTGACTCTAACACCTCTACATAAAAACTTCATCCAAACGAGTTTTTGGCTACAACTTTTAATTTTTAACTAGTCAACATAACTCCTCAATATAACTCGTTAACCGAAATCCTATCTAAATATGTCAAACAAACAGCCACTCAGGGTTACATAAGCCAAGCACGAAGGAATAGAGACACGAAAAGTGTCTAACCACAGGACCAATCTAGGATGGTTGATTTCATATTCAGTATAGATAACACGACCTTAGTGTCCACTCCAACACAAAACTTGCAGTCGAAGCAGCTCCCACATTTCAATTCCTAGGAAACCCCCAAAAGTCATGGACACATCTTTGACCCAAAGCAAAAGTAAACTCTCCATCACAATTAGGTAACACACAACTTTATGGCTGTATTCAAATAACAGGACAACAAAAACAATCCGCAAACAAAAGAATCAAATTGTAATGAATTAGGCGTTTGAGTAAAGATAAGTGCATATTTGGATCCAAAAACGGACAACAGAGACAGGAAGCAAGCAAGCAGATTACACAAATTAGGTCAGTTTCAAAGAGATAGCGAAATGTGAATTAAGAAGCTAAAAACGCAAAATCGAGAAGTCACATACCATTTAAAGCCCAGCCCAGGCGAGTGAGCCGAAAGAGAATCGTCATCATCATCATCAATTGGCAGCAGGGCCATGGCGAAGAGCTCCGGCATGATTGGGAGTCCGGCGAGGGAAGATCAAGAGGAAGAGCTTTCGCGGTCGGCGCTGGCGGTGTTTCGCGCCAAGGAAGAGGAGATCGAGAGGAAGAAGACGGAGATGAGGGAAAAAGTGGAGGCTCGCCTTGGCCGCGCAGAAGAAGCCACCAAGCGATTGGCGGAGATTCGAGAAGTAAGCTGTTTCATTTTGGGTGGTTCAGATTTTAGGGTTTTTATTTTGTGGGGGATTTGAAATGGAGCGATTGACATTGCAGGAGCTTGAAGCAATGGCGGATCCGATGAGGAAGGAGGTTTCGTTCATACGGAAGAAGATTGATTTGGTCAATAAAGAATTGAAGCCTTTGGGATTTGCCTGTCAAAAGAAGGTCACACTTTCCAAACTCCAACTCCAATTCCAATTCCAATTCCAATTCCAATTCCCAATTCACTTTTTTTTTAATATCAAAATAAATATATCTCATTTTATTTCATCCTCATCTTCCAACTCTTTCACGTTTGATTGACATATTTAATTTACTGATTCTGTTCGAAAATTTATATCCAAACAAGTTTATAACCAAGACACCATTGATCCATCTCTAAAATGTGACACTGAGATATTTTGAACTAGAGATCTCTTAAGGAAACATACTTGAAGTCTTTAGTCTCAACCGCTGGCCGTATTGGAGACAACTTCTCATTATTATTTTTTTAAAAAAACTTTCATTTCTAATTATTCATTTATAATTGTTCAACCATTTCTACTCATTTATTTTTAATCATTTCTTTCAAATCAATCAAAATAATTCATTTTTAATAATTTCTCTTTTAATTACTAAAAATAATTACTCATCTTAAATCTACATTCAAACAAAGTTTTGATTCTAATTCCTCTACACAAAAACTACATACGAACAAGTTTTTGACACAATTTTCAATTTTTAACTACTTAATATAACTTCTCAATATAACCCCTTAATCTAAATCCTACTTAAATATGTCAAAGAAACGCCTCCTAAATTAGTGGAGGAATTCAAACTTATGACCGAATTCATGAAAATATATTAATGTCATCGAACTAGTTCTCTCGCGGGCTATACTTTATTATAGTTAACCTTTAATCTTTCAAATCCTTATTCATTTTAGTTAACCTTTCTAAAAATGACATGGGTTGTAATTCAAAATTTCTAACTTTTTTGGAGGGCAAACAAGATTCGGTTACTTTATGCAGTCAACAACACCTTATTAGATGATTTTTTTACGTACGGGAATGAATAAATCCAACATAAAAGACCGATTGATACATTTCAACACAAAAAATGTTAAATTTGGATGAGTTTCTAAGATTAAGCCTGATAACATAGTACTTGCTAACATATAAGCAAACCAACCAAAAAGAAAAGAAGAGAACTTCAAAACCGTAGAAGAACGAAATTATAGTTTAAAGTGAGATCCATTCTCACGATTTTTTTTAATCGATCAGTCCCTTCCTCAAGCCAAAGCAAAACCGACATTTGTTATATAATATTATAGAAGTTTTTTCTACTTTATTTTGACGAAATCTATCTTCTCTATGTGGAAGACTATTTTTTTTTTTTTTAACAATGGAGGACTAATATTTTGATTTACTGGTTCTCAGGAGAGAGAATACAAAGAAGTGTTGGAGTTATTTAATGAAAAGAACAACGAGAAGTCTCAATTGATAGCCAAGCTAATGGAGGTCTTATTATTTCCTTAATCTTATAAAATAAAATTATCTTTCTCTTTATCTAGTCCATGTACTTTTAAAATCAACTTTATTTTCTTATAATCAACTTTATTAAACACCTTTTTTATAATGCCAATTAAACATTTTGTTGATAATAAAAATAGGTAAAGTCTTTATTTTAGTCCCCTAAAGAGAATTTTTTTTTTTTAGTACTTATGAATTTAGTTTTAAAGTTAAATAAAACTTAATGAATAATACTTGTCTTTAGAAATCAATTTATGTGGAAATTAATTATTCATGTGTTTTTTTTAAATGTATAAAACTTTTACATTTTTAATCATCAAGTTTGAGATGTAACTTCAATTTTGTCCATAAATTTCAAATTTGAACACCTTTGTTTATGACATTTCAATAATAGTGCACACTTTTGACCTTTATGTGTTTTTTTAGTTTACTTTTATATTTTATTTTTTTAAAAAAATGAAATTCATATAAAAATTAAAATACTCAATTCTTCAATATATTGAAATTTAAAATTAGTCTATTTATCCCAAATTGAAACTAACCCTAAACTTGGACACTAAAATATATTTTTCTTGACCCTATTAATGAGATAATTTTTTGTATTTGGTAATAAAGATTGAGTTGACAATATTGAAGAAAGTTACACTAAATTGTCAATTTACACATATACAACGAGTTGTCACGTACTTAATTTTCTAGGAAACTACAATTGATCCTATGAACTGTATATAACATTGGATGATGTTGGATAACAAAAACATATTCACAAAGAACTTGGTTTAAATTATTTCTTTGAAAGAAAAAATAGAACTTGGTTTAAATTGAAATACATAAAGATGACAATAAAATTAGAAAAGAATAATTTTGGTATGATTGTATTGTTAATAATTGATGGTATATATTTGAGTAATTTGGTGACAGTTGGTGAAAGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTGAGCAAGAACATTGACATTCTTCATTAACAAATATGTGTGTTCTTCTAACTCAAAATAACCCCCCCTTTTTTTTTCTCCTTCTCAATATTATCTATTTTTTTTCTTCTGAAGATTTCTATGAAAAATATGGAGAGAAGAGAGAGAAAATAAATTTAACTTTGTGGAGTGGATGACTTTTGCTTGTATTAATAAATTCTTAAACTACTACCAAGTATTGATTCAGTGTTTGGAGTATGATTTTCTCATTTCATGCCTGTAATTTTCATTTCTTTTTACCCAACCATTTTTTAGAAATAATTTTGAGTGGGA

mRNA sequence

CTCATTTTTACTTTTAAAAACGACTCTCATTTCTAACGATTCATTTTTAATCATTCATTTATAACTACTCAATCATTTCTAACCACCCATTTTTAATCATTCCTTTCAAATCCATCAAAATAATTCATTTTTAACCACTCATTTTTAATCATTTTTTAACTACTAAAAATAACTACTCATTTTAAATCTACATCCAAATAAAATTTTGACTCTAACACCTCTACATAAAAACTTCATCCAAACGAGTTTTTGGCTACAACTTTTAATTTTTAACTAGTCAACATAACTCCTCAATATAACTCGTTAACCGAAATCCTATCTAAATATGTCAAACAAACAGCCACTCAGGGTTACATAAGCCAAGCACGAAGGAATAGAGACACGAAAAGTGTCTAACCACAGGACCAATCTAGGATGGTTGATTTCATATTCAGTATAGATAACACGACCTTAGTGTCCACTCCAACACAAAACTTGCAGTCGAAGCAGCTCCCACATTTCAATTCCTAGGAAACCCCCAAAAGTCATGGACACATCTTTGACCCAAAGCAAAAGTAAACTCTCCATCACAATTAGGTAACACACAACTTTATGGCTGTATTCAAATAACAGGACAACAAAAACAATCCGCAAACAAAAGAATCAAATTGTAATGAATTAGGCGTTTGAGTAAAGATAAGTGCATATTTGGATCCAAAAACGGACAACAGAGACAGGAAGCAAGCAAGCAGATTACACAAATTAGGTCAGTTTCAAAGAGATAGCGAAATGTGAATTAAGAAGCTAAAAACGCAAAATCGAGAAGTCACATACCATTTAAAGCCCAGCCCAGGCGAGTGAGCCGAAAGAGAATCGTCATCATCATCATCAATTGGCAGCAGGGCCATGGCGAAGAGCTCCGGCATGATTGGGAGTCCGGCGAGGGAAGATCAAGAGGAAGAGCTTTCGCGGTCGGCGCTGGCGGTGTTTCGCGCCAAGGAAGAGGAGATCGAGAGGAAGAAGACGGAGATGAGGGAAAAAGTGGAGGCTCGCCTTGGCCGCGCAGAAGAAGCCACCAAGCGATTGGCGGAGATTCGAGAAGAGCTTGAAGCAATGGCGGATCCGATGAGGAAGGAGGTTTCGTTCATACGGAAGAAGATTGATTTGGTCAATAAAGAATTGAAGCCTTTGGGATTTGCCTGTCAAAAGAAGGAGAGAGAATACAAAGAAGTGTTGGAGTTATTTAATGAAAAGAACAACGAGAAGTCTCAATTGATAGCCAAGCTAATGGAGTTGGTGAAAGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTGAGCAAGAACATTGACATTCTTCATTAACAAATATGTGTGTTCTTCTAACTCAAAATAACCCCCCCTTTTTTTTTCTCCTTCTCAATATTATCTATTTTTTTTCTTCTGAAGATTTCTATGAAAAATATGGAGAGAAGAGAGAGAAAATAAATTTAACTTTGTGGAGTGGATGACTTTTGCTTGTATTAATAAATTCTTAAACTACTACCAAGTATTGATTCAGTGTTTGGAGTATGATTTTCTCATTTCATGCCTGTAATTTTCATTTCTTTTTACCCAACCATTTTTTAGAAATAATTTTGAGTGGGA

Coding sequence (CDS)

ATGGCGAAGAGCTCCGGCATGATTGGGAGTCCGGCGAGGGAAGATCAAGAGGAAGAGCTTTCGCGGTCGGCGCTGGCGGTGTTTCGCGCCAAGGAAGAGGAGATCGAGAGGAAGAAGACGGAGATGAGGGAAAAAGTGGAGGCTCGCCTTGGCCGCGCAGAAGAAGCCACCAAGCGATTGGCGGAGATTCGAGAAGAGCTTGAAGCAATGGCGGATCCGATGAGGAAGGAGGTTTCGTTCATACGGAAGAAGATTGATTTGGTCAATAAAGAATTGAAGCCTTTGGGATTTGCCTGTCAAAAGAAGGAGAGAGAATACAAAGAAGTGTTGGAGTTATTTAATGAAAAGAACAACGAGAAGTCTCAATTGATAGCCAAGCTAATGGAGTTGGTGAAAGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTGAGCAAGAACATTGACATTCTTCATTAA

Protein sequence

MAKSSGMIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH

Homology

[Close]

BLAST of Sed0008393 vs. NCBI nr
Match: XP_038893849.1 (uncharacterized protein LOC120082661 [Benincasa hispida])

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-59
Identity = 134/146 (91.78%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 8   IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREEL 67
           IGSP +EDQEEE+SRSALAVFRAKEEEIERKK EMREKVEARLGRAEEATKRLAEIREEL
Sbjct: 33  IGSPVKEDQEEEISRSALAVFRAKEEEIERKKMEMREKVEARLGRAEEATKRLAEIREEL 92

Query: 68  EAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEKNNEKSQLIAKL 127
           E M DPMRKEVSFIRKKIDLVNKELKPLG  CQKKEREYKEVL+LFNEKN EKSQL+AKL
Sbjct: 93  EGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKL 152

Query: 128 MELVKESEKLRMKKLEELSKNIDILH 154
           MELV ESEKLRMKKLEELSKNIDILH
Sbjct: 153 MELVNESEKLRMKKLEELSKNIDILH 178

[Close]

BLAST of Sed0008393 vs. NCBI nr
Match: XP_022142637.1 (uncharacterized protein LOC111012700 [Momordica charantia])

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-59
Identity = 137/157 (87.26%), Postives = 144/157 (91.72%), Query Frame = 0


Query: 3   KSSGM------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEA 62
           ++SGM      IGSP +EDQ+EELSRSA A+FRAKEEEIERKK EMR+KVEARLGRAEEA
Sbjct: 21  RNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEA 80

Query: 63  TKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEK 122
           TKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLG  CQKKEREYKEVLELFNEK
Sbjct: 81  TKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEK 140

Query: 123 NNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH 154
           N EKSQL+AKLMELV ESEKLRMKKLEELSKNIDILH
Sbjct: 141 NREKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 177

[Close]

BLAST of Sed0008393 vs. NCBI nr
Match: XP_004139478.1 (uncharacterized protein LOC101203874 [Cucumis sativus] >KGN64906.1 hypothetical protein Csa_022823 [Cucumis sativus])

HSP 1 Score: 237.3 bits (604), Expect = 8.9e-59
Identity = 132/149 (88.59%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 4   SSGMIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEI 63
           ++G+IGSP +EDQEEE+SRSALA+FRAKEEEIERKK EMREKVEARLGRAEEATKRLAEI
Sbjct: 27  NNGIIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGRAEEATKRLAEI 86

Query: 64  REELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEKNNEKSQL 123
           REELE M DPMRKEVSFIRKKIDLVNKELKPLG  CQKKEREYKEVL+LFNEKN EKSQL
Sbjct: 87  REELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNEKNKEKSQL 146

Query: 124 IAKLMELVKESEKLRMKKLEELSKNIDIL 153
           ++KLMELV ESEKLRMKKLEELSKNIDIL
Sbjct: 147 VSKLMELVNESEKLRMKKLEELSKNIDIL 175

[Close]

BLAST of Sed0008393 vs. NCBI nr
Match: XP_008461743.1 (PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo] >KAA0040914.1 putative DNA double-strand break repair Rad50 ATPase [Cucumis melo var. makuwa] >TYK10622.1 putative DNA double-strand break repair Rad50 ATPase [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.5e-58
Identity = 135/159 (84.91%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 3   KSSGM--------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAE 62
           K+SGM        IGSP +EDQEEE+SRSALA+FRAKEEEIERKK EMREKVEARLGRAE
Sbjct: 17  KNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGRAE 76

Query: 63  EATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFN 122
           EATKRLAEIREELE M DPMRKEVSFIRKKIDLVNKELKPLG  CQKKEREYKEVL+LFN
Sbjct: 77  EATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFN 136

Query: 123 EKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH 154
           EKN EKSQL++KLMELV ESEKLRM+KLEELSKNIDILH
Sbjct: 137 EKNREKSQLVSKLMELVNESEKLRMRKLEELSKNIDILH 175

[Close]

BLAST of Sed0008393 vs. NCBI nr
Match: XP_022930056.1 (uncharacterized protein LOC111436527 [Cucurbita moschata] >KAG6583639.1 hypothetical protein SDJN03_19571, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019311.1 hypothetical protein SDJN02_18271 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 134/146 (91.78%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 8   IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREEL 67
           IGSPAREDQEEELSRSALA+FRAKEEEIERKK EMREKVE RLGRAEEATKRLAEIREEL
Sbjct: 23  IGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREEL 82

Query: 68  EAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEKNNEKSQLIAKL 127
           E M DPMRKEVS IRKKIDLVNKELKPLG  CQKKEREYKEVLEL NEKN EKSQLIAKL
Sbjct: 83  EGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKL 142

Query: 128 MELVKESEKLRMKKLEELSKNIDILH 154
           MELV ESEKLRMKKLEELS NIDILH
Sbjct: 143 MELVNESEKLRMKKLEELSNNIDILH 168

[Close]

BLAST of Sed0008393 vs. ExPASy TrEMBL
Match: A0A6J1CNF1 (RAB6-interacting golgin OS=Momordica charantia OX=3673 GN=LOC111012700 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 8.7e-60
Identity = 137/157 (87.26%), Postives = 144/157 (91.72%), Query Frame = 0


Query: 3   KSSGM------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEA 62
           ++SGM      IGSP +EDQ+EELSRSA A+FRAKEEEIERKK EMR+KVEARLGRAEEA
Sbjct: 21  RNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEA 80

Query: 63  TKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEK 122
           TKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLG  CQKKEREYKEVLELFNEK
Sbjct: 81  TKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEK 140

Query: 123 NNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH 154
           N EKSQL+AKLMELV ESEKLRMKKLEELSKNIDILH
Sbjct: 141 NREKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 177

[Close]

BLAST of Sed0008393 vs. ExPASy TrEMBL
Match: A0A0A0LY59 (RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.3e-59
Identity = 132/149 (88.59%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 4   SSGMIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEI 63
           ++G+IGSP +EDQEEE+SRSALA+FRAKEEEIERKK EMREKVEARLGRAEEATKRLAEI
Sbjct: 27  NNGIIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGRAEEATKRLAEI 86

Query: 64  REELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEKNNEKSQL 123
           REELE M DPMRKEVSFIRKKIDLVNKELKPLG  CQKKEREYKEVL+LFNEKN EKSQL
Sbjct: 87  REELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNEKNKEKSQL 146

Query: 124 IAKLMELVKESEKLRMKKLEELSKNIDIL 153
           ++KLMELV ESEKLRMKKLEELSKNIDIL
Sbjct: 147 VSKLMELVNESEKLRMKKLEELSKNIDIL 175

[Close]

BLAST of Sed0008393 vs. ExPASy TrEMBL
Match: A0A5D3CH78 (RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G001010 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.4e-59
Identity = 135/159 (84.91%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 3   KSSGM--------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAE 62
           K+SGM        IGSP +EDQEEE+SRSALA+FRAKEEEIERKK EMREKVEARLGRAE
Sbjct: 17  KNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGRAE 76

Query: 63  EATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFN 122
           EATKRLAEIREELE M DPMRKEVSFIRKKIDLVNKELKPLG  CQKKEREYKEVL+LFN
Sbjct: 77  EATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFN 136

Query: 123 EKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH 154
           EKN EKSQL++KLMELV ESEKLRM+KLEELSKNIDILH
Sbjct: 137 EKNREKSQLVSKLMELVNESEKLRMRKLEELSKNIDILH 175

[Close]

BLAST of Sed0008393 vs. ExPASy TrEMBL
Match: A0A1S3CFV6 (RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103500274 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.4e-59
Identity = 135/159 (84.91%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 3   KSSGM--------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAE 62
           K+SGM        IGSP +EDQEEE+SRSALA+FRAKEEEIERKK EMREKVEARLGRAE
Sbjct: 17  KNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGRAE 76

Query: 63  EATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFN 122
           EATKRLAEIREELE M DPMRKEVSFIRKKIDLVNKELKPLG  CQKKEREYKEVL+LFN
Sbjct: 77  EATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFN 136

Query: 123 EKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH 154
           EKN EKSQL++KLMELV ESEKLRM+KLEELSKNIDILH
Sbjct: 137 EKNREKSQLVSKLMELVNESEKLRMRKLEELSKNIDILH 175

[Close]

BLAST of Sed0008393 vs. ExPASy TrEMBL
Match: A0A6J1EPU7 (RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111436527 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.6e-58
Identity = 134/146 (91.78%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 8   IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREEL 67
           IGSPAREDQEEELSRSALA+FRAKEEEIERKK EMREKVE RLGRAEEATKRLAEIREEL
Sbjct: 23  IGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREEL 82

Query: 68  EAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEKNNEKSQLIAKL 127
           E M DPMRKEVS IRKKIDLVNKELKPLG  CQKKEREYKEVLEL NEKN EKSQLIAKL
Sbjct: 83  EGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKL 142

Query: 128 MELVKESEKLRMKKLEELSKNIDILH 154
           MELV ESEKLRMKKLEELS NIDILH
Sbjct: 143 MELVNESEKLRMKKLEELSNNIDILH 168

[Close]

BLAST of Sed0008393 vs. TAIR 10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 187.2 bits (474), Expect = 9.9e-48
Identity = 107/150 (71.33%), Postives = 123/150 (82.00%), Query Frame = 0


Query: 4   SSGMIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEI 63
           S  M  S     ++EE+SR+AL+ FRAKEEEIE+KK E+RE+V+A+LGR EE TKRLA I
Sbjct: 29  SGSMSFSSQMSKEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALI 88

Query: 64  REELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEKNNEKSQL 123
           REELE +ADPMRKEV+ +RKKID VNKELKPLG   QKKEREYKE LE FNEKN EK QL
Sbjct: 89  REELEGLADPMRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQL 148

Query: 124 IAKLMELVKESEKLRMKKLEELSKNIDILH 154
           I +LMELV ESEK+RMKKLEELSKNID +H
Sbjct: 149 ITRLMELVGESEKMRMKKLEELSKNIDSIH 178

[Close]

BLAST of Sed0008393 vs. TAIR 10
Match: AT2G27740.1 (Family of unknown function (DUF662) )

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-45
Identity = 100/152 (65.79%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 3   KSSG---MIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKR 62
           KSSG   M GSP  +++EEELS+SA A+F+AKE+EIER+K E++++V+ +LG AEEAT+R
Sbjct: 20  KSSGNISMNGSPMIDEKEEELSQSAFALFKAKEDEIERRKMEVKDRVQKKLGLAEEATRR 79

Query: 63  LAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEKNNE 122
           LAEIREELEA+ DPMRKE+S IRK++D +N+ELKPLG +CQ+KERE+KE LE +NEKN E
Sbjct: 80  LAEIREELEALTDPMRKEISAIRKRVDAINRELKPLGQSCQRKEREFKEALEAYNEKNKE 139

Query: 123 KSQLIAKLMELVKESEKLRMKKLEELSKNIDI 152
           K+  ++KL+ELV ESEKLRM KLEELSK+I+I
Sbjct: 140 KAIFVSKLVELVTESEKLRMTKLEELSKSIEI 171

[Close]

BLAST of Sed0008393 vs. TAIR 10
Match: AT3G52920.2 (Family of unknown function (DUF662) )

HSP 1 Score: 177.9 bits (450), Expect = 6.0e-45
Identity = 98/135 (72.59%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 16  QEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMR 75
           ++EE++RSAL+ FRAKE+EIE++K E+RE+V+A+LGR EE T+RLA IREELE MADPMR
Sbjct: 27  EDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQLGRVEEETRRLASIREELETMADPMR 86

Query: 76  KEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESE 135
           KEV+++RKKID VNKELKPLG   QKKEREYKE L+ FNEKN EK QLI KLMELV ESE
Sbjct: 87  KEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLITKLMELVGESE 146

Query: 136 KLRMKKLEELSKNID 151
           KLR+KKL+ELS++ID
Sbjct: 147 KLRLKKLDELSRSID 161

[Close]

BLAST of Sed0008393 vs. TAIR 10
Match: AT2G36410.2 (Family of unknown function (DUF662) )

HSP 1 Score: 174.9 bits (442), Expect = 5.1e-44
Identity = 97/135 (71.85%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 16  QEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMR 75
           ++EE++RSAL+ FRAKE+EIE+++ E+RE+++A+LGR E+ TKRL+ IREELE+MADPMR
Sbjct: 56  EDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLSTIREELESMADPMR 115

Query: 76  KEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESE 135
           KEVS +RKKID VNKELKPLG   QKKEREYKE L+ FNEKN EK QLI KLMELV ESE
Sbjct: 116 KEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLITKLMELVGESE 175

Query: 136 KLRMKKLEELSKNID 151
           KLRM KLEELSK+I+
Sbjct: 176 KLRMIKLEELSKSIE 190

[Close]

BLAST of Sed0008393 vs. TAIR 10
Match: AT3G52920.1 (Family of unknown function (DUF662) )

HSP 1 Score: 172.6 bits (436), Expect = 2.5e-43
Identity = 98/138 (71.01%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 16  QEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMR 75
           ++EE++RSAL+ FRAKE+EIE++K E+RE+V+A+LGR EE T+RLA IREELE MADPMR
Sbjct: 27  EDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQLGRVEEETRRLASIREELETMADPMR 86

Query: 76  KEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNEKNNEKSQLIAKLME---LVK 135
           KEV+++RKKID VNKELKPLG   QKKEREYKE L+ FNEKN EK QLI KLME   LV 
Sbjct: 87  KEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLITKLMEMGQLVG 146

Query: 136 ESEKLRMKKLEELSKNID 151
           ESEKLR+KKL+ELS++ID
Sbjct: 147 ESEKLRLKKLDELSRSID 164

The following BLAST results are available for this feature:

BLAST of Sed0008393 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893849.1	1.1e-59	91.78	uncharacterized protein LOC120082661 [Benincasa hispida]	[more]
XP_022142637.1	1.8e-59	87.26	uncharacterized protein LOC111012700 [Momordica charantia]	[more]
XP_004139478.1	8.9e-59	88.59	uncharacterized protein LOC101203874 [Cucumis sativus] >KGN64906.1 hypothetical ...	[more]
XP_008461743.1	1.5e-58	84.91	PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo] >...	[more]
XP_022930056.1	3.4e-58	91.78	uncharacterized protein LOC111436527 [Cucurbita moschata] >KAG6583639.1 hypothet...	[more]

BLAST of Sed0008393 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0008393 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNF1	8.7e-60	87.26	RAB6-interacting golgin OS=Momordica charantia OX=3673 GN=LOC111012700 PE=3 SV=1	[more]
A0A0A0LY59	4.3e-59	88.59	RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=3 SV=1	[more]
A0A5D3CH78	7.4e-59	84.91	RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFV6	7.4e-59	84.91	RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103500274 PE=3 SV=1	[more]
A0A6J1EPU7	1.6e-58	91.78	RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111436527 PE=3 SV=1	[more]

BLAST of Sed0008393 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09980.1	9.9e-48	71.33	Family of unknown function (DUF662)	[more]
AT2G27740.1	1.6e-45	65.79	Family of unknown function (DUF662)	[more]
AT3G52920.2	6.0e-45	72.59	Family of unknown function (DUF662)	[more]
AT2G36410.2	5.1e-44	71.85	Family of unknown function (DUF662)	[more]
AT3G52920.1	2.5e-43	71.01	Family of unknown function (DUF662)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..140
None	No IPR available	COILS	Coil	Coil	coord: 25..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR21470:SF8	EXPRESSED PROTEIN	coord: 13..151
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 8..150 e-value: 2.7E-69 score: 231.9
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	RAB6-INTERACTING PROTEIN GORAB	coord: 13..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008393.1	Sed0008393.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus