Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATCCAAAGAGTTCTGTGCCTCGGCCTTCTTCTCCTTGTGAGTTTAGGCTTAGCTTCCGCAGCTAGAAGCCTTCTAGTTTATGATCCTCCTGCACGCCACAATGAGTATGATCGCCCCAACCCAAGAGGAGAGTTCGATCACGACCATCATGACGAATCCAACGACAACGTATACGGTGGAAGTGCTGGTAGAGGATATGGAGTGAGTGGCTCTGCTCTCGGAAGCTCGGGATACGGTAGTGGTGGAAGTGCTGGATATGGAGGAAGCCAAGGTGGACGTGGAGATGGTTATGGTAAAGACGGGCGTGGAGGATATGGAAGCGGAGGAGACCGGGGCGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGACCGGGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGACCGTGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGCGGAGACCGTGGTGTCGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGAACGCGGTGTAGGCTATGACAATAGAGGGAGTGTTAGATATGGAAATGGAGGAAGCGGAGGCTATGGAAGTGAAAAAGGGAATGGATACGGCCAAAGAGGAGACCATGGAGTAGGATATGATAGTAGAGGAAGTGTTGGGTCTGGAAGTGATTATGGAAATTCTCGAGGATATGGCAATGGAAATGGACAAGCTGGTGGTGCCTATGGCAATGGAAATGGCTCAGCTGGAACTGCTTATGGCAGTAGTGGAAGTGCTCATGGAGGAGAACATGACAATAACAAAGGAAGTGGAGAGGAAGGAGGTTCTGATGGTGGATACTAAAAACCCTTTTAAGTAATTATTAACGTCCCAATTTCATTATGTGTCAAACAAAAACAATAATAAAGAAATTGGGTTACGCAATGTTGTCCACAAAATCGATGATGATGGAATTGTTCTATTGAATATGAATTTCAAACTATATGGTTGAATGATAATCAAAC
mRNA sequence
ATGGCTATCCAAAGAGTTCTGTGCCTCGGCCTTCTTCTCCTTGTGAGTTTAGGCTTAGCTTCCGCAGCTAGAAGCCTTCTAGTTTATGATCCTCCTGCACGCCACAATGAGTATGATCGCCCCAACCCAAGAGGAGAGTTCGATCACGACCATCATGACGAATCCAACGACAACGTATACGGTGGAAGTGCTGGTAGAGGATATGGAGTGAGTGGCTCTGCTCTCGGAAGCTCGGGATACGGTAGTGGTGGAAGTGCTGGATATGGAGGAAGCCAAGGTGGACGTGGAGATGGTTATGGTAAAGACGGGCGTGGAGGATATGGAAGCGGAGGAGACCGGGGCGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGACCGGGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGACCGTGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGCGGAGACCGTGGTGTCGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGAACGCGGTGTAGGCTATGACAATAGAGGGAGTGTTAGATATGGAAATGGAGGAAGCGGAGGCTATGGAAGTGAAAAAGGGAATGGATACGGCCAAAGAGGAGACCATGGAGTAGGATATGATAGTAGAGGAAGTGTTGGGTCTGGAAGTGATTATGGAAATTCTCGAGGATATGGCAATGGAAATGGACAAGCTGGTGGTGCCTATGGCAATGGAAATGGCTCAGCTGGAACTGCTTATGGCAGTAGTGGAAGTGCTCATGGAGGAGAACATGACAATAACAAAGGAAGTGGAGAGGAAGGAGGTTCTGATGGTGGATACTAAAAACCCTTTTAAGTAATTATTAACGTCCCAATTTCATTATGTGTCAAACAAAAACAATAATAAAGAAATTGGGTTACGCAATGTTGTCCACAAAATCGATGATGATGGAATTGTTCTATTGAATATGAATTTCAAACTATATGGTTGAATGATAATCAAAC
Coding sequence (CDS)
ATGGCTATCCAAAGAGTTCTGTGCCTCGGCCTTCTTCTCCTTGTGAGTTTAGGCTTAGCTTCCGCAGCTAGAAGCCTTCTAGTTTATGATCCTCCTGCACGCCACAATGAGTATGATCGCCCCAACCCAAGAGGAGAGTTCGATCACGACCATCATGACGAATCCAACGACAACGTATACGGTGGAAGTGCTGGTAGAGGATATGGAGTGAGTGGCTCTGCTCTCGGAAGCTCGGGATACGGTAGTGGTGGAAGTGCTGGATATGGAGGAAGCCAAGGTGGACGTGGAGATGGTTATGGTAAAGACGGGCGTGGAGGATATGGAAGCGGAGGAGACCGGGGCGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGACCGGGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGACCGTGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGCGGAGACCGTGGTGTCGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGAACGCGGTGTAGGCTATGACAATAGAGGGAGTGTTAGATATGGAAATGGAGGAAGCGGAGGCTATGGAAGTGAAAAAGGGAATGGATACGGCCAAAGAGGAGACCATGGAGTAGGATATGATAGTAGAGGAAGTGTTGGGTCTGGAAGTGATTATGGAAATTCTCGAGGATATGGCAATGGAAATGGACAAGCTGGTGGTGCCTATGGCAATGGAAATGGCTCAGCTGGAACTGCTTATGGCAGTAGTGGAAGTGCTCATGGAGGAGAACATGACAATAACAAAGGAAGTGGAGAGGAAGGAGGTTCTGATGGTGGATACTAA
Protein sequence
MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVYGGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGERGVGYDNRGSVRYGNGGSGGYGSEKGNGYGQRGDHGVGYDSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGSGEEGGSDGGY
Homology
BLAST of Sed0008281 vs. NCBI nr
Match:
XP_022923448.1 (glycine-rich cell wall structural protein 1.8-like isoform X1 [Cucurbita moschata])
HSP 1 Score: 166.0 bits (419), Expect = 4.8e-37
Identity = 159/291 (54.64%), Postives = 172/291 (59.11%), Query Frame = 0
Query: 1 MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
MAI RVLCL LLLV LGLASAAR+LL YDP RH YDRPNPR +D H DES DN Y
Sbjct: 1 MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
Query: 61 GGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
GG +G GYG SALG SGYGSGG RG GYG G YG G GVG
Sbjct: 61 GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVSSGVGGAGY 120
Query: 121 GSVG-YGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGY 180
GS YG G D GVGY S GY +GG+ G G +GYGSG GY+N G+ GY
Sbjct: 121 GSGSRYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSG-----GYENGGNGGY 180
Query: 181 GSGGERGVGYDNRGSVRYGNGGSGGYGSEKGNGYGQRGDHGVGYDSRGSVGSGSDYGNSR 240
G G + +GY +R GNG GYG G G G D G G RG G GS G S
Sbjct: 181 GQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGGYG---RGD-GVGSHAGGS- 240
Query: 241 GYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGSGEEGGSDGGY 291
G G G G G A G+G G AG AYG SG AHGGEHDN+KGSGEEGG DGGY
Sbjct: 241 GIGAGGGYGGHAGGSGIG-AGGAYG-SGGAHGGEHDNSKGSGEEGGYDGGY 270
BLAST of Sed0008281 vs. NCBI nr
Match:
XP_022923449.1 (glycine-rich cell wall structural protein 1.8-like isoform X2 [Cucurbita moschata])
HSP 1 Score: 162.9 bits (411), Expect = 4.1e-36
Identity = 158/293 (53.92%), Postives = 172/293 (58.70%), Query Frame = 0
Query: 1 MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
MAI RVLCL LLLV LGLASAAR+LL YDP RH YDRPNPR +D H DES DN Y
Sbjct: 1 MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
Query: 61 GGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
GG +G GYG SALG SGYGSGG RG GYG G YG G GV
Sbjct: 61 GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVSSGV----- 120
Query: 121 GSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVG---YDNRGSV 180
G GYGSG G G D+ G G G R GY+N G+ GYG G D +G Y+N G+
Sbjct: 121 GGAGYGSGSRYGGGEDH----GVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSYENGGNG 180
Query: 181 GYGSGGERGVGYDNRGSVRYGNGGSGGYGSEKGNGYGQRGDHGVGYDSRGSVGSGSDYGN 240
GYG G + +GY +R GNG GYG G G G D G G RG G GS G
Sbjct: 181 GYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGGYG---RGD-GVGSHAGG 240
Query: 241 SRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGSGEEGGSDGGY 291
S G G G G G A G+G G AG AYG SG AHGGEHDN+KGSGEEGG DGGY
Sbjct: 241 S-GIGAGGGYGGHAGGSGIG-AGGAYG-SGGAHGGEHDNSKGSGEEGGYDGGY 268
BLAST of Sed0008281 vs. NCBI nr
Match:
XP_022923541.1 (glycine-rich cell wall structural protein 1.8-like isoform X1 [Cucurbita moschata])
HSP 1 Score: 161.4 bits (407), Expect = 1.2e-35
Identity = 155/294 (52.72%), Postives = 172/294 (58.50%), Query Frame = 0
Query: 1 MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
MAI RVLCL LLLV LGLASAAR+LL YDP RH YDRPNPR +D H DES DN Y
Sbjct: 1 MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
Query: 61 GGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
GG +G GYG SALG SGYGSGG RG GYG G YG G + GVG
Sbjct: 61 GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVNSGVGGAGY 120
Query: 121 GSVG-YGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGY 180
GS YG G D GVGY S GY +GG+ G G +GYGSG GY+N G+ GY
Sbjct: 121 GSGSRYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSG-----GYENGGNGGY 180
Query: 181 GSGGERGVGYDNRGSVRYGNGGSGGYGSEKGNGYGQRGDHGVGYDSRGSVGSGSDYGNSR 240
G G + +GY +R GNG G G+ GNGYG +G G G G G G
Sbjct: 181 GQGRDHDIGYGSRN----GNGNGNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGVGGHA 240
Query: 241 GYGNGNGQAGGAYGNGNGS---AGTAYGSSGSAHGGEHDNNKGSGEEGGSDGGY 291
G G+G G GG G+ GS AG AYG SG AHGGEHDN+KGSG EGG DGGY
Sbjct: 241 G-GSGIGAGGGYGGHAGGSGIGAGGAYG-SGGAHGGEHDNSKGSG-EGGYDGGY 273
BLAST of Sed0008281 vs. NCBI nr
Match:
KAG6577709.1 (hypothetical protein SDJN03_25283, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 159.8 bits (403), Expect = 3.4e-35
Identity = 156/293 (53.24%), Postives = 169/293 (57.68%), Query Frame = 0
Query: 1 MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
MAI RVLCL LLLV LGLASAAR+LL YDP RH YDRPNPR +D H DES DNVY
Sbjct: 1 MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNVY 60
Query: 61 GGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
GG +G GYGV GSALG SGYGSGG RG GYG G YG G GV
Sbjct: 61 GGRSGGGYGVGGSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVSSGV----- 120
Query: 121 GSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYG 180
G GYGSG G G D+ G G GG R GY+N G+ GYG G D +GY +R G G
Sbjct: 121 GGAGYGSGSRYGGGEDH----GVGYGGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNG 180
Query: 181 SGGERGVGYDNRGSVRYGNGG--SGGYGSEKGNGYGQRGDHGVGYDSRGS-VGSGSDYGN 240
G G YGNGG GGYG RGD GVG + GS +G+G YG
Sbjct: 181 YGDSHG----------YGNGGGVDGGYG---------RGD-GVGGHAGGSGIGAGGGYGG 240
Query: 241 SRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGSGEEGGSDGGY 291
G G+G G AGGAYG SG AHGGEHDN+KGSGEEGG DGGY
Sbjct: 241 HAG-GSGIG-AGGAYG------------SGGAHGGEHDNSKGSGEEGGYDGGY 241
BLAST of Sed0008281 vs. NCBI nr
Match:
XP_023552983.1 (glycine-rich cell wall structural protein 1.8-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 159.5 bits (402), Expect = 4.5e-35
Identity = 157/293 (53.58%), Postives = 172/293 (58.70%), Query Frame = 0
Query: 1 MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
MAI RVLCL LLLV GLASAAR+LL YDP RH YDRPNPR +D H DES DNVY
Sbjct: 1 MAITRVLCLSFLLLVGFGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNVY 60
Query: 61 GGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
GG +G GYGV GSALG SGYGSGG RG GYG G YG G GV
Sbjct: 61 GGRSGGGYGVGGSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVSSGV----- 120
Query: 121 GSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYG 180
G GYGSG G G D+ G G GG R GY+N G+ GYG G D +GY +R G G
Sbjct: 121 GGAGYGSGSRYGGGEDH----GVGYGGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNG 180
Query: 181 SGGERGVGYDNRGSVRYGNGG--SGGYGSEKGNGYGQRGDHGVGYDSRGS-VGSGSDYGN 240
+G G D+ G YGNGG GGYG RGD GVG + GS +G+G YG
Sbjct: 181 NGNGYG---DSHG---YGNGGGVDGGYG---------RGD-GVGGHAGGSGIGAGGGYGG 240
Query: 241 SRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGSGEEGGSDGGY 291
G G+G G AGGAYG SG AHGGEHDN+KGSGEEGG DGGY
Sbjct: 241 HAG-GSGIG-AGGAYG------------SGGAHGGEHDNSKGSGEEGGYDGGY 245
BLAST of Sed0008281 vs. ExPASy Swiss-Prot
Match:
P10496 (Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 3.4e-09
Identity = 123/307 (40.07%), Postives = 143/307 (46.58%), Query Frame = 0
Query: 3 IQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVYGG 62
I R+ L L+L++LG+ SA R+LL D Y + G GG
Sbjct: 4 IHRLPSLVFLVLLALGVCSARRALLTLDA-----GYGLGHGTGGGYGGAAGSYGGGGGGG 63
Query: 63 SAGRG-----YGVSGSALGSSGYGSGGSAGYGGSQG-GRGDGYGKDGRGG--YGSGGDR- 122
S G G +GV G G SG G GG GYGG QG G G G G G GG YG GG+R
Sbjct: 64 SGGGGGYAGEHGVVGYG-GGSGGGQGGGVGYGGDQGAGYGGGGGSGGGGGVAYGGGGERG 123
Query: 123 --GVGYDNRGSVGYGSGGDRGVGYDNRGSV------GYGSGGDRGVGYDNRGSV--GYGS 182
G G GYG+GG+ G+GY G GY +GG +G GY G G G
Sbjct: 124 GYGGGQGGGAGGGYGAGGEHGIGYGGGGGSGAGGGGGYNAGGAQGGGYGTGGGAGGGGGG 183
Query: 183 GGDRGVGYDNRGSVGYGSGGERGVGYDNRGSVRYGNGGSGGYGSEKGNGYGQRGDHGVGY 242
GGD G GY G G+GG G GY G +G GG GG G G GYG G+HG
Sbjct: 184 GGDHGGGYGG----GQGAGGGAGGGYGGGG--EHGGGGGGGQGGGAGGGYGAGGEHG--- 243
Query: 243 DSRGSVGSGSDYGNSRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGSGEE 291
G G G G GYG G GGA G G AG YG+ GGEH G G+
Sbjct: 244 ---GGAGGGQGGGAGGGYGAGGEHGGGAGGGQGGGAGGGYGA-----GGEHGGGAGGGQG 287
BLAST of Sed0008281 vs. ExPASy Swiss-Prot
Match:
Q9SIH2 (Glycine-rich protein DOT1 OS=Arabidopsis thaliana OX=3702 GN=DOT1 PE=2 SV=1)
HSP 1 Score: 52.8 bits (125), Expect = 7.8e-06
Identity = 91/222 (40.99%), Postives = 104/222 (46.85%), Query Frame = 0
Query: 61 GGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGY-GKDGRGGYGSGGDRGVGYDN 120
G SAG G G+ G G SGY GG +G GG GG G+G+ G G GG+G G G G
Sbjct: 43 GLSAGLGVGIGGGPGGGSGY--GGGSGEGGGAGGHGEGHIGGGGGGGHGGGAGGGGGGGP 102
Query: 121 RGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGY 180
G G GSG G GY + G+G GG G G G G GG G GY G
Sbjct: 103 GGGYGGGSGEGGGAGYGGGEAGGHGGGGGGGA-----GGGGGGGGGAHGGGY------GG 162
Query: 181 GSGGERGVGYDNRGSVRYGNGGSGGYGSEKGNGYGQRGDHGVGYDSRGSVGSGSDYGNSR 240
G G G GY G+ +G GG GG G G G G+ G HG GY + G G G G
Sbjct: 163 GQGAGAGGGYGGGGAGGHGGGGGGGNGGGGGGGSGEGGAHGGGYGAGGGAGEGYGGGAGA 222
Query: 241 GYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGSG 282
G G G GG G G G G +SG HGG +GSG
Sbjct: 223 GGHGGGGGGGGGSGGGGGGGGGYAAASGYGHGGGAGGGEGSG 251
BLAST of Sed0008281 vs. ExPASy TrEMBL
Match:
A0A6J1E9N8 (glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431141 PE=4 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 2.3e-37
Identity = 159/291 (54.64%), Postives = 172/291 (59.11%), Query Frame = 0
Query: 1 MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
MAI RVLCL LLLV LGLASAAR+LL YDP RH YDRPNPR +D H DES DN Y
Sbjct: 1 MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
Query: 61 GGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
GG +G GYG SALG SGYGSGG RG GYG G YG G GVG
Sbjct: 61 GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVSSGVGGAGY 120
Query: 121 GSVG-YGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGY 180
GS YG G D GVGY S GY +GG+ G G +GYGSG GY+N G+ GY
Sbjct: 121 GSGSRYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSG-----GYENGGNGGY 180
Query: 181 GSGGERGVGYDNRGSVRYGNGGSGGYGSEKGNGYGQRGDHGVGYDSRGSVGSGSDYGNSR 240
G G + +GY +R GNG GYG G G G D G G RG G GS G S
Sbjct: 181 GQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGGYG---RGD-GVGSHAGGS- 240
Query: 241 GYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGSGEEGGSDGGY 291
G G G G G A G+G G AG AYG SG AHGGEHDN+KGSGEEGG DGGY
Sbjct: 241 GIGAGGGYGGHAGGSGIG-AGGAYG-SGGAHGGEHDNSKGSGEEGGYDGGY 270
BLAST of Sed0008281 vs. ExPASy TrEMBL
Match:
A0A6J1E6F7 (glycine-rich cell wall structural protein 1.8-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431141 PE=4 SV=1)
HSP 1 Score: 162.9 bits (411), Expect = 2.0e-36
Identity = 158/293 (53.92%), Postives = 172/293 (58.70%), Query Frame = 0
Query: 1 MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
MAI RVLCL LLLV LGLASAAR+LL YDP RH YDRPNPR +D H DES DN Y
Sbjct: 1 MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
Query: 61 GGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
GG +G GYG SALG SGYGSGG RG GYG G YG G GV
Sbjct: 61 GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVSSGV----- 120
Query: 121 GSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVG---YDNRGSV 180
G GYGSG G G D+ G G G R GY+N G+ GYG G D +G Y+N G+
Sbjct: 121 GGAGYGSGSRYGGGEDH----GVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSYENGGNG 180
Query: 181 GYGSGGERGVGYDNRGSVRYGNGGSGGYGSEKGNGYGQRGDHGVGYDSRGSVGSGSDYGN 240
GYG G + +GY +R GNG GYG G G G D G G RG G GS G
Sbjct: 181 GYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGGYG---RGD-GVGSHAGG 240
Query: 241 SRGYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGSGEEGGSDGGY 291
S G G G G G A G+G G AG AYG SG AHGGEHDN+KGSGEEGG DGGY
Sbjct: 241 S-GIGAGGGYGGHAGGSGIG-AGGAYG-SGGAHGGEHDNSKGSGEEGGYDGGY 268
BLAST of Sed0008281 vs. ExPASy TrEMBL
Match:
A0A6J1E726 (glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431202 PE=4 SV=1)
HSP 1 Score: 161.4 bits (407), Expect = 5.7e-36
Identity = 155/294 (52.72%), Postives = 172/294 (58.50%), Query Frame = 0
Query: 1 MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
MAI RVLCL LLLV LGLASAAR+LL YDP RH YDRPNPR +D H DES DN Y
Sbjct: 1 MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
Query: 61 GGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
GG +G GYG SALG SGYGSGG RG GYG G YG G + GVG
Sbjct: 61 GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVNSGVGGAGY 120
Query: 121 GSVG-YGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGY 180
GS YG G D GVGY S GY +GG+ G G +GYGSG GY+N G+ GY
Sbjct: 121 GSGSRYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSG-----GYENGGNGGY 180
Query: 181 GSGGERGVGYDNRGSVRYGNGGSGGYGSEKGNGYGQRGDHGVGYDSRGSVGSGSDYGNSR 240
G G + +GY +R GNG G G+ GNGYG +G G G G G G
Sbjct: 181 GQGRDHDIGYGSRN----GNGNGNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGVGGHA 240
Query: 241 GYGNGNGQAGGAYGNGNGS---AGTAYGSSGSAHGGEHDNNKGSGEEGGSDGGY 291
G G+G G GG G+ GS AG AYG SG AHGGEHDN+KGSG EGG DGGY
Sbjct: 241 G-GSGIGAGGGYGGHAGGSGIGAGGAYG-SGGAHGGEHDNSKGSG-EGGYDGGY 273
BLAST of Sed0008281 vs. ExPASy TrEMBL
Match:
A0A6J1E6E4 (glycine-rich protein DOT1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431202 PE=4 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 4.8e-35
Identity = 154/296 (52.03%), Postives = 172/296 (58.11%), Query Frame = 0
Query: 1 MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
MAI RVLCL LLLV LGLASAAR+LL YDP RH YDRPNPR +D H DES DN Y
Sbjct: 1 MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
Query: 61 GGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
GG +G GYG SALG SGYGSGG RG GYG G YG G + GV
Sbjct: 61 GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVNSGV----- 120
Query: 121 GSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVG---YDNRGSV 180
G GYGSG G G D+ G G G R GY+N G+ GYG G D +G Y+N G+
Sbjct: 121 GGAGYGSGSRYGGGEDH----GVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSYENGGNG 180
Query: 181 GYGSGGERGVGYDNRGSVRYGNGGSGGYGSEKGNGYGQRGDHGVGYDSRGSVGSGSDYGN 240
GYG G + +GY +R GNG G G+ GNGYG +G G G G G G
Sbjct: 181 GYGQGRDHDIGYGSRN----GNGNGNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGVGG 240
Query: 241 SRGYGNGNGQAGGAYGNGNGS---AGTAYGSSGSAHGGEHDNNKGSGEEGGSDGGY 291
G G+G G GG G+ GS AG AYG SG AHGGEHDN+KGSG EGG DGGY
Sbjct: 241 HAG-GSGIGAGGGYGGHAGGSGIGAGGAYG-SGGAHGGEHDNSKGSG-EGGYDGGY 271
BLAST of Sed0008281 vs. ExPASy TrEMBL
Match:
A0A6J1E9X7 (glycine-rich cell wall structural protein 1.8-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111431202 PE=4 SV=1)
HSP 1 Score: 156.8 bits (395), Expect = 1.4e-34
Identity = 153/293 (52.22%), Postives = 170/293 (58.02%), Query Frame = 0
Query: 1 MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
MAI RVLCL LLLV LGLASAAR+LL YDP RH YDRPNPR +D H DES DN Y
Sbjct: 1 MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
Query: 61 GGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGYGKDGRGGYGSGGDRGVGYDNR 120
GG +G GYG SALG SGYGSGG RG GYG G YG G + GV
Sbjct: 61 GGRSGGGYGDGSSALGGSGYGSGGV---------RGSGYGNGGGNAYGGGVNSGV----- 120
Query: 121 GSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYG 180
G GYGSG G G D+ G G G R GY+N G+ GYG G D +GY + G GYG
Sbjct: 121 GGAGYGSGSRYGGGEDH----GVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSNG--GYG 180
Query: 181 SGGERGVGYDNRGSVRYGNGGSGGYGSEKGNGYGQRGDHGVGYDSRGSVGSGSDYGNSRG 240
G + +GY +R GNG G G+ GNGYG +G G G G G G G
Sbjct: 181 QGRDHDIGYGSRN----GNGNGNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGVGGHAG 240
Query: 241 YGNGNGQAGGAYGNGNGS---AGTAYGSSGSAHGGEHDNNKGSGEEGGSDGGY 291
G+G G GG G+ GS AG AYG SG AHGGEHDN+KGSG EGG DGGY
Sbjct: 241 -GSGIGAGGGYGGHAGGSGIGAGGAYG-SGGAHGGEHDNSKGSG-EGGYDGGY 266
BLAST of Sed0008281 vs. TAIR 10
Match:
AT2G36120.1 (Glycine-rich protein family )
HSP 1 Score: 52.8 bits (125), Expect = 5.5e-07
Identity = 91/222 (40.99%), Postives = 104/222 (46.85%), Query Frame = 0
Query: 61 GGSAGRGYGVSGSALGSSGYGSGGSAGYGGSQGGRGDGY-GKDGRGGYGSGGDRGVGYDN 120
G SAG G G+ G G SGY GG +G GG GG G+G+ G G GG+G G G G
Sbjct: 43 GLSAGLGVGIGGGPGGGSGY--GGGSGEGGGAGGHGEGHIGGGGGGGHGGGAGGGGGGGP 102
Query: 121 RGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGYGSGGDRGVGYDNRGSVGY 180
G G GSG G GY + G+G GG G G G G GG G GY G
Sbjct: 103 GGGYGGGSGEGGGAGYGGGEAGGHGGGGGGGA-----GGGGGGGGGAHGGGY------GG 162
Query: 181 GSGGERGVGYDNRGSVRYGNGGSGGYGSEKGNGYGQRGDHGVGYDSRGSVGSGSDYGNSR 240
G G G GY G+ +G GG GG G G G G+ G HG GY + G G G G
Sbjct: 163 GQGAGAGGGYGGGGAGGHGGGGGGGNGGGGGGGSGEGGAHGGGYGAGGGAGEGYGGGAGA 222
Query: 241 GYGNGNGQAGGAYGNGNGSAGTAYGSSGSAHGGEHDNNKGSG 282
G G G GG G G G G +SG HGG +GSG
Sbjct: 223 GGHGGGGGGGGGSGGGGGGGGGYAAASGYGHGGGAGGGEGSG 251
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022923448.1 | 4.8e-37 | 54.64 | glycine-rich cell wall structural protein 1.8-like isoform X1 [Cucurbita moschat... | [more] |
| XP_022923449.1 | 4.1e-36 | 53.92 | glycine-rich cell wall structural protein 1.8-like isoform X2 [Cucurbita moschat... | [more] |
| XP_022923541.1 | 1.2e-35 | 52.72 | glycine-rich cell wall structural protein 1.8-like isoform X1 [Cucurbita moschat... | [more] |
| KAG6577709.1 | 3.4e-35 | 53.24 | hypothetical protein SDJN03_25283, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_023552983.1 | 4.5e-35 | 53.58 | glycine-rich cell wall structural protein 1.8-like [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| P10496 | 3.4e-09 | 40.07 | Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris OX=3885 PE=2... | [more] |
| Q9SIH2 | 7.8e-06 | 40.99 | Glycine-rich protein DOT1 OS=Arabidopsis thaliana OX=3702 GN=DOT1 PE=2 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1E9N8 | 2.3e-37 | 54.64 | glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita mosch... | [more] |
| A0A6J1E6F7 | 2.0e-36 | 53.92 | glycine-rich cell wall structural protein 1.8-like isoform X2 OS=Cucurbita mosch... | [more] |
| A0A6J1E726 | 5.7e-36 | 52.72 | glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita mosch... | [more] |
| A0A6J1E6E4 | 4.8e-35 | 52.03 | glycine-rich protein DOT1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11... | [more] |
| A0A6J1E9X7 | 1.4e-34 | 52.22 | glycine-rich cell wall structural protein 1.8-like isoform X3 OS=Cucurbita mosch... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G36120.1 | 5.5e-07 | 40.99 | Glycine-rich protein family | [more] |
