Sed0008247 (gene) Chayote v1

Overview


Name	Sed0008247
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Glutamic acid-rich protein
Location	LG07: 2698603 .. 2699657 (-)
RNA-Seq Expression	Sed0008247
Synteny	Sed0008247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCCTCACAAAAAAAAAGCCCCCATTTTTTTACACCCACTTTAGAAGATGACCAACAAAATTATTTATAATCTCAAGGGCAGCCCATGTTTTGTTAACTTTTTATAGCCTTTGCTTTATATAAGCCTTACCACACCACATCCTCCATTTGTTATTATTGCTAAGCAAAAGTTACCTCTTTTTTCCTTTTTCCATTTCATCATCATGCTCTCAACTCCTCTATTCTTCAACTTCCATTCTCACCATTTTACTCATAATCACATTGAGGATTTTACACCTTACTTTCTCTTTGAGGCGACGGGCGACTCGGAGGCCGACTCCTTGGCTGATCATGGGGGCTCGACCACCCCCATGAACACGGCCGAGTTCAACGACGCCGAATCTTGCACCGACGACACTCCTGCTTTGTGTGATGGAATTGTGATGGATGAAAATGAAGATGAGGAAGTGGAGATGTTTGAGAATGATGAGGTAGCTGAAAGCAACAAAACAAAGTCAAGTGCTTCTATTGATTCAAATAAGGAGTTCAAAATGCTTAATGAGGTGGACAAAAACAAGTTGTTTTGGGAAACTTGTTTGGCATCATAACATGTAACTCTTTTTTTTTTTTTTTTTTTTGTTATGTAGCCATTTTTCCAACCTCCTTCCCTTCTCCCAATGTTGAAAGGTTAATTTGTGCTAAAGAAAACAAAGGAAGGAAAACTTGTGCATTTTTTAAAAAAACTTTCTTAGATATTAATATGTACATTAAAGTAACAAATTGGTTTTAATGATCCATTTAAGAAAGTGTTCTTTTATCTCATACTTTTGACCAAGTTTTTTTGCCTTGTTTTCTGGGTTCTTTTGAAGATTTCTCTAATATTTGATGCTAGTTCAGATTGAACCCAGGAAAAGGGTAGATTTTAAATTTCACTTTAAATCTAGAGTTCAAAGCAAAGCCAACAACTTCATTTCTCCCATGACTGTTTGGTAGGTGGCCGTCGTAGTTTGAACACAGAATAGTCCTAAACTATTGTGGACATCCTCCTATGATTATGCTCGGTAGGTGGCCAC

mRNA sequence

CTTTTCCTCACAAAAAAAAAGCCCCCATTTTTTTACACCCACTTTAGAAGATGACCAACAAAATTATTTATAATCTCAAGGGCAGCCCATGTTTTGTTAACTTTTTATAGCCTTTGCTTTATATAAGCCTTACCACACCACATCCTCCATTTGTTATTATTGCTAAGCAAAAGTTACCTCTTTTTTCCTTTTTCCATTTCATCATCATGCTCTCAACTCCTCTATTCTTCAACTTCCATTCTCACCATTTTACTCATAATCACATTGAGGATTTTACACCTTACTTTCTCTTTGAGGCGACGGGCGACTCGGAGGCCGACTCCTTGGCTGATCATGGGGGCTCGACCACCCCCATGAACACGGCCGAGTTCAACGACGCCGAATCTTGCACCGACGACACTCCTGCTTTGTGTGATGGAATTGTGATGGATGAAAATGAAGATGAGGAAGTGGAGATGTTTGAGAATGATGAGGTAGCTGAAAGCAACAAAACAAAGTCAAGTGCTTCTATTGATTCAAATAAGGAGTTCAAAATGCTTAATGAGGTGGACAAAAACAAGTTGTTTTGGGAAACTTGTTTGGCATCATAACATGTAACTCTTTTTTTTTTTTTTTTTTTTGTTATGTAGCCATTTTTCCAACCTCCTTCCCTTCTCCCAATGTTGAAAGGTTAATTTGTGCTAAAGAAAACAAAGGAAGGAAAACTTGTGCATTTTTTAAAAAAACTTTCTTAGATATTAATATGTACATTAAAGTAACAAATTGGTTTTAATGATCCATTTAAGAAAGTGTTCTTTTATCTCATACTTTTGACCAAGTTTTTTTGCCTTGTTTTCTGGGTTCTTTTGAAGATTTCTCTAATATTTGATGCTAGTTCAGATTGAACCCAGGAAAAGGGTAGATTTTAAATTTCACTTTAAATCTAGAGTTCAAAGCAAAGCCAACAACTTCATTTCTCCCATGACTGTTTGGTAGGTGGCCGTCGTAGTTTGAACACAGAATAGTCCTAAACTATTGTGGACATCCTCCTATGATTATGCTCGGTAGGTGGCCAC

Coding sequence (CDS)

ATGCTCTCAACTCCTCTATTCTTCAACTTCCATTCTCACCATTTTACTCATAATCACATTGAGGATTTTACACCTTACTTTCTCTTTGAGGCGACGGGCGACTCGGAGGCCGACTCCTTGGCTGATCATGGGGGCTCGACCACCCCCATGAACACGGCCGAGTTCAACGACGCCGAATCTTGCACCGACGACACTCCTGCTTTGTGTGATGGAATTGTGATGGATGAAAATGAAGATGAGGAAGTGGAGATGTTTGAGAATGATGAGGTAGCTGAAAGCAACAAAACAAAGTCAAGTGCTTCTATTGATTCAAATAAGGAGTTCAAAATGCTTAATGAGGTGGACAAAAACAAGTTGTTTTGGGAAACTTGTTTGGCATCATAA

Protein sequence

MLSTPLFFNFHSHHFTHNHIEDFTPYFLFEATGDSEADSLADHGGSTTPMNTAEFNDAESCTDDTPALCDGIVMDENEDEEVEMFENDEVAESNKTKSSASIDSNKEFKMLNEVDKNKLFWETCLAS

Homology

[Close]

BLAST of Sed0008247 vs. NCBI nr
Match: XP_022991734.1 (uncharacterized protein LOC111488264 [Cucurbita maxima])

HSP 1 Score: 149.4 bits (376), Expect = 2.0e-32
Identity = 87/132 (65.91%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MLSTPLFFNFHSHHFTHNHIEDFTPYFLFEATGDSEADSLADHGGSTTPMNTAEFNDAES 60
           MLSTP FFNFH H F  NHIEDF+ + LFEATGDSEADSL  HG ST    + EFNDAES
Sbjct: 1   MLSTPFFFNFHPHQF-GNHIEDFSSHLLFEATGDSEADSLVGHGSSTV---SVEFNDAES 60

Query: 61  CTDDTPALCDGIVMDEN-EDEEVEMFENDEVAESN----KTKSSASIDSNKEFKMLNEVD 120
           CTDDTPA+C+     EN +D++ +  ENDE  ES      T+SSASIDS +EFKMLNEVD
Sbjct: 61  CTDDTPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVD 120

Query: 121 KNKLFWETCLAS 128
           KN+LFWETCLAS
Sbjct: 121 KNRLFWETCLAS 128

[Close]

BLAST of Sed0008247 vs. NCBI nr
Match: XP_022960478.1 (uncharacterized protein LOC111461201 [Cucurbita moschata])

HSP 1 Score: 148.3 bits (373), Expect = 4.5e-32
Identity = 83/133 (62.41%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 6   LFFNFHSHHFTHNHIEDFTPYFLFEATGDSEADSLADHGGSTTPMNTAEFNDAESCTDDT 65
           + FNFH H+F  +HI+DF+ Y LFEA+GDSE DSLAD  GST  +N  EF+DAESCTDDT
Sbjct: 1   MLFNFHPHYFARDHIDDFSSYLLFEASGDSEVDSLADLEGSTAALNLVEFDDAESCTDDT 60

Query: 66  PALCDGIVMDEN-------EDEEVEMFENDEVAESN----KTKSSASIDSNKEFKMLNEV 125
             L D  + DEN       EDE+ EMFEND V ES      T SSASIDS KEFKMLN+V
Sbjct: 61  LDLYDEFLRDENESEAEEDEDEDEEMFENDGVVESKAIGFTTSSSASIDSTKEFKMLNDV 120

Query: 126 DKNKLFWETCLAS 128
           +KN+LFWETCLAS
Sbjct: 121 EKNRLFWETCLAS 133

[Close]

BLAST of Sed0008247 vs. NCBI nr
Match: KAG6575870.1 (hypothetical protein SDJN03_26509, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014404.1 hypothetical protein SDJN02_24581, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.5 bits (371), Expect = 7.7e-32
Identity = 84/131 (64.12%), Postives = 99/131 (75.57%), Query Frame = 0


Query: 1   MLSTPLFFNFHSHHFTHNHIEDFTPYFLFEATGDSEADSLADHGGSTTPMNTAEFNDAES 60
           MLSTP FFNFH H F  NHIEDF+ + LFEATGDSEADSL  HG ST    + EFNDAES
Sbjct: 1   MLSTPFFFNFHPHQF-GNHIEDFSSHLLFEATGDSEADSLVGHGSSTV---SVEFNDAES 60

Query: 61  CTDDTPALCDGIVMDENEDEEVEMFENDEVAESN----KTKSSASIDSNKEFKMLNEVDK 120
           CTDDTPA+ + +   EN+D++ +  EN+E  ES      T+SSASIDS +EFKMLNEV+K
Sbjct: 61  CTDDTPAMRNKVQTYENDDDDDDDDENEEEVESKPIGFMTESSASIDSAEEFKMLNEVEK 120

Query: 121 NKLFWETCLAS 128
           N+LFWETCLAS
Sbjct: 121 NRLFWETCLAS 127

[Close]

BLAST of Sed0008247 vs. NCBI nr
Match: XP_023513847.1 (uncharacterized protein LOC111778329 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.5 bits (371), Expect = 7.7e-32
Identity = 83/134 (61.94%), Postives = 98/134 (73.13%), Query Frame = 0


Query: 6   LFFNFHSHHFTHNHIEDFTPYFLFEATGDSEADSLADHGGS-TTPMNTAEFNDAESCTDD 65
           + FNFH H+F  +H++DF+ Y LFEA+GDSE DSLAD GGS TT +N  EFNDAESCTDD
Sbjct: 1   MLFNFHPHYFARDHVDDFSSYLLFEASGDSEVDSLADLGGSTTTTLNLVEFNDAESCTDD 60

Query: 66  TPALCDGIV-------MDENEDEEVEMFENDEVAESN----KTKSSASIDSNKEFKMLNE 125
           TP L D +V        +E+EDE+   FEND V ES      T SSASIDS KEFKMLN+
Sbjct: 61  TPDLYDELVRYENESEAEEDEDEDEGTFENDGVVESKAIGFTTSSSASIDSTKEFKMLND 120

Query: 126 VDKNKLFWETCLAS 128
           V+KN+LFWETCLAS
Sbjct: 121 VEKNRLFWETCLAS 134

[Close]

BLAST of Sed0008247 vs. NCBI nr
Match: XP_038896353.1 (uncharacterized protein LOC120084618 [Benincasa hispida])

HSP 1 Score: 147.1 bits (370), Expect = 1.0e-31
Identity = 92/139 (66.19%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 1   MLSTPLFFNFHSHHFTH---NHIEDFTPYFLFEATGDSEADSLADHGGSTTPMNTAEFND 60
           MLSTPLFFNF+ H F H   NHIED + YFL EATGDSE DS  D GGS     + EFND
Sbjct: 1   MLSTPLFFNFYPHPFAHKQGNHIEDISSYFLLEATGDSEIDSSVDLGGSVA---STEFND 60

Query: 61  AESCTDDTPALCD---GIVMDENEDEEVEMFEN--DEVAESN----KTKSSASIDSNKEF 120
           AESCTDDTP +C    G    E+EDEE EM EN  DEV ES      TKS+ASIDS KEF
Sbjct: 61  AESCTDDTPTICTNEFGKYEYEDEDEE-EMVENDYDEVVESKAIGFTTKSNASIDSTKEF 120

Query: 121 KMLNEVDKNKLFWETCLAS 128
           KMLNEVDKN+LFWETCLAS
Sbjct: 121 KMLNEVDKNRLFWETCLAS 135

[Close]

BLAST of Sed0008247 vs. ExPASy TrEMBL
Match: A0A6J1JVN0 (uncharacterized protein LOC111488264 OS=Cucurbita maxima OX=3661 GN=LOC111488264 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.9e-33
Identity = 87/132 (65.91%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MLSTPLFFNFHSHHFTHNHIEDFTPYFLFEATGDSEADSLADHGGSTTPMNTAEFNDAES 60
           MLSTP FFNFH H F  NHIEDF+ + LFEATGDSEADSL  HG ST    + EFNDAES
Sbjct: 1   MLSTPFFFNFHPHQF-GNHIEDFSSHLLFEATGDSEADSLVGHGSSTV---SVEFNDAES 60

Query: 61  CTDDTPALCDGIVMDEN-EDEEVEMFENDEVAESN----KTKSSASIDSNKEFKMLNEVD 120
           CTDDTPA+C+     EN +D++ +  ENDE  ES      T+SSASIDS +EFKMLNEVD
Sbjct: 61  CTDDTPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVD 120

Query: 121 KNKLFWETCLAS 128
           KN+LFWETCLAS
Sbjct: 121 KNRLFWETCLAS 128

[Close]

BLAST of Sed0008247 vs. ExPASy TrEMBL
Match: A0A6J1H932 (uncharacterized protein LOC111461201 OS=Cucurbita moschata OX=3662 GN=LOC111461201 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.2e-32
Identity = 83/133 (62.41%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 6   LFFNFHSHHFTHNHIEDFTPYFLFEATGDSEADSLADHGGSTTPMNTAEFNDAESCTDDT 65
           + FNFH H+F  +HI+DF+ Y LFEA+GDSE DSLAD  GST  +N  EF+DAESCTDDT
Sbjct: 1   MLFNFHPHYFARDHIDDFSSYLLFEASGDSEVDSLADLEGSTAALNLVEFDDAESCTDDT 60

Query: 66  PALCDGIVMDEN-------EDEEVEMFENDEVAESN----KTKSSASIDSNKEFKMLNEV 125
             L D  + DEN       EDE+ EMFEND V ES      T SSASIDS KEFKMLN+V
Sbjct: 61  LDLYDEFLRDENESEAEEDEDEDEEMFENDGVVESKAIGFTTSSSASIDSTKEFKMLNDV 120

Query: 126 DKNKLFWETCLAS 128
           +KN+LFWETCLAS
Sbjct: 121 EKNRLFWETCLAS 133

[Close]

BLAST of Sed0008247 vs. ExPASy TrEMBL
Match: A0A6J1KST6 (uncharacterized protein LOC111497906 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497906 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 80/134 (59.70%), Postives = 92/134 (68.66%), Query Frame = 0


Query: 6   LFFNFHSHHFTHNHIEDFTPYFLFEATGDSEADSLADHGGSTTPMNTAEFNDAESCTDDT 65
           + FNFH H+F  +HI+DF+ Y LFEA+GDSE D     GGST  +N  EFNDAESCTDDT
Sbjct: 1   MLFNFHPHYFARDHIDDFSSYLLFEASGDSEVDL----GGSTATLNLVEFNDAESCTDDT 60

Query: 66  PALCDGIVMDEN--------EDEEVEMFENDEVAESN----KTKSSASIDSNKEFKMLNE 125
           P L D  V DEN        E+E  E FEND V ES      T SSASIDS K+FKMLN+
Sbjct: 61  PDLYDEFVRDENESEAEEDDEEEYKETFENDGVVESKAIGFTTSSSASIDSTKDFKMLND 120

Query: 126 VDKNKLFWETCLAS 128
           V+KN+LFWETCLAS
Sbjct: 121 VEKNRLFWETCLAS 130

[Close]

BLAST of Sed0008247 vs. ExPASy TrEMBL
Match: A0A5A7UVG0 (Glutamic acid-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00160 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.9e-29
Identity = 89/148 (60.14%), Postives = 102/148 (68.92%), Query Frame = 0


Query: 1   MLST-PLFFNFHSHHFTH---NHIEDFTPYFLFEATGDSEADSLADHGGSTTPMNTAEFN 60
           MLST PLFFNF+ HHF H   NHIED + YFLFEATGDSEADS  D   S++  +T EFN
Sbjct: 1   MLSTSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEADSSVDLESSSS-ASTTEFN 60

Query: 61  DAESCTDDTPA-LC-----------DGIVMDENEDEEVEMFENDEVAESN----KTKSSA 120
           DAESCTDDTP  LC           DG  M EN+D++ +  E +EV ES       KS+A
Sbjct: 61  DAESCTDDTPTMLCNNENEDDDDDGDGEEMVENDDDDHDNEEEEEVVESKAIGFSIKSNA 120

Query: 121 SIDSNK-EFKMLNEVDKNKLFWETCLAS 128
           SIDS K +FKMLNEVDKN+LFWETCLAS
Sbjct: 121 SIDSTKDDFKMLNEVDKNRLFWETCLAS 147

[Close]

BLAST of Sed0008247 vs. ExPASy TrEMBL
Match: A0A6J1DA36 (uncharacterized protein LOC111018429 OS=Momordica charantia OX=3673 GN=LOC111018429 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.1e-29
Identity = 87/140 (62.14%), Postives = 96/140 (68.57%), Query Frame = 0


Query: 1   MLSTPLFFNFHSHHFTHNH--IEDFTPYFLFEATGDSEAD-SLADHGGSTTPMNTAEFND 60
           M  TPLFFN H HHF      ++DF+ Y LFEATGDSEAD S  D GGS+    + E ND
Sbjct: 1   MFKTPLFFNLHHHHFAPKDGCLQDFSSYLLFEATGDSEADASSVDPGGSSAAPGSPECND 60

Query: 61  AESCTDDTPALCDGIVMDENED----EEVEMFE--NDEVAESNK----TKSSASIDSNKE 120
           AESCTDDTP  CD   MDE+ED    EE E +E  +DEV ES      TKSSASIDS KE
Sbjct: 61  AESCTDDTPD-CDEFDMDEDEDHEDGEEGENYEKNDDEVVESKATKGFTKSSASIDSTKE 120

Query: 121 FKMLNEVDKNKLFWETCLAS 128
           FKMLNEVDKN+LFWE CLAS
Sbjct: 121 FKMLNEVDKNRLFWEACLAS 139

The following BLAST results are available for this feature:

BLAST of Sed0008247 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991734.1	2.0e-32	65.91	uncharacterized protein LOC111488264 [Cucurbita maxima]	[more]
XP_022960478.1	4.5e-32	62.41	uncharacterized protein LOC111461201 [Cucurbita moschata]	[more]
KAG6575870.1	7.7e-32	64.12	hypothetical protein SDJN03_26509, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023513847.1	7.7e-32	61.94	uncharacterized protein LOC111778329 [Cucurbita pepo subsp. pepo]	[more]
XP_038896353.1	1.0e-31	66.19	uncharacterized protein LOC120084618 [Benincasa hispida]	[more]

BLAST of Sed0008247 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0008247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVN0	9.9e-33	65.91	uncharacterized protein LOC111488264 OS=Cucurbita maxima OX=3661 GN=LOC111488264...	[more]
A0A6J1H932	2.2e-32	62.41	uncharacterized protein LOC111461201 OS=Cucurbita moschata OX=3662 GN=LOC1114612...	[more]
A0A6J1KST6	1.3e-29	59.70	uncharacterized protein LOC111497906 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7UVG0	3.9e-29	60.14	Glutamic acid-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A6J1DA36	5.1e-29	62.14	uncharacterized protein LOC111018429 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Sed0008247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..59
None	No IPR available	PANTHER	PTHR35726:SF4	GLUTAMIC ACID-RICH PROTEIN-LIKE	coord: 16..127
None	No IPR available	PANTHER	PTHR35726	GLUTAMIC ACID-RICH PROTEIN-LIKE	coord: 16..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008247.1	Sed0008247.1	mRNA