Sed0007731 (gene) Chayote v1

Overview


Name	Sed0007731
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Photosystem II reaction center Psb28 protein
Location	LG09: 24499637 .. 24501717 (+)
RNA-Seq Expression	Sed0007731
Synteny	Sed0007731

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCCTTAAATGAAAATTCTCATCTTCCCAAGTTGTGGTTGCAAGAAACTAAACCATCGTAAGATATTTTTAAGAATAAAATGTTAAGATATTCTCTAGGATTTGTTAGGATATTTATTATATATTATCTAATAACTGTTAAGAGATCTTTTGAGATTTGATACTTACCATTTTATATATATATATATTTGTGGAAAGTTAATGGAAAACCAGAAGGTTTAGGCCTTTCTCATAAATTTATCATTGTATTAGAGCCACCATAAATTAGGGTTACCAAAAAAAAAAGAAAAAAGAAAAGAATGAAGAGATATGGTCGACGACGTGATCAACGACAATTGACTATTCGTGAAATCTGCTCGTTTGGTGTGGTATATTTTGTTCGGTGATGTGATCAACGACAGTTTGACGAATTATGAAATCCGCACGATTCGTGTGATGCAATAATGCATTGTTGTAGCAGCTTATTCTGTTTGGCGACGTGATCAAAGACCGTTTGACTATTCGTGAAATCCGTGCACATTCGTGTGGGGGCAAAAATGCATCCTAGTAGCGGTATATTATGTTCGACGATGAGATTGACGATAGAAGAAACATCCATGTGTGTGGCATGCAATAACTTTGTTTTGAAGATTTTATTTTCAAGTTGGTCATGTGAATTTACATGCTCGAACTTGAGGGTAGTGTTAGGAATAAAATATAGTTAAGATATTCTTGTTAGGAATAAAATATGTTTAAGATATTCTCTAGGATTTGTTAGGAGATCTTTTGAGATTTGATATTTCATCCACTATATATATTTGTAGAAAGTTATTAGAAACCCAGAAAGTTAAGGCATTTTTCACAAATTTTTCAATATTAGTGAAACAAAATTATATAGTTTAAAGGCATTTTTTATGGTTTAGATGCAGATTGTATTCAATTATTGATTTCTTTTTTGTTTGAATTCAATAATATTAGGGTAGAAGCTATTTTGAGTGATTAGAAATAAGTAATTGTTTAGAGTGGTTATAACTTGAAATTATAATAATAGCTCTTTCAATGTGAATTTTGGTATAAGAGTTGTAGCTGGTTTGGATGTAAATTTTCGTTGAAGAGTTGTAACCAATAACTTGTTTTGGATGTGCATTTTGTAAAGTGGTTGGTTAAAAAACATTGGGTTTGAAGTGAAAAGTTATTTTGAGATCTAACTAAAAAATTTTAATACAAGTACTCAAAAAATTTATCTAGCTTTATTGTTATTATTATTTTTGTAAGAAGAGGTGATGCATCAAAATTTCTCATAATTAATAAGTATCATTATTATTGTTATTGTTACTATAAAAGATTTTTGTTGATGAAAAAAATGAAGACCCCCCTGAATTATATAGTTAGAAAATAGAGAGAGAGATATTTGAGTGTAAATCTATCTATCTATCCTGTTGAAGTGAATGGCTCTCCTTCTTACACACAGCATCCTCACACTACAACCCTCAACCCTCTATCTCTCTATCTTTCTCCGCCATCTCCTCCGCACTGCGTTTCAATGGCGACGGCGGCGGCGCCTCTGCAACCTCTCGCTTCCACTCTCTCCACCAGACCTAAAACCTCCGTCGCTCTCTCCTCCCCCTTCGCCACCGTCGCACTCCACCGCAGCGCCTCCTCCTCCTTCCACGGCCGTGCTCTCTCCCTCTCCACCGCCGCAAACTGCGAGACGCTGAACCGGCGGCGGCGGAGGAGGAGGCTGTGGGTCGCGATGGTCCAGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGCGGCTGACGAAGTCGCGAGACGGCACGAACGGGATGGCGATCTTCAAGTTCGAGGAGCCGTCGGTGTTCGACTCCTCGAGCGAGGTCGGGGACATCACCGGGTTCTACATGATCGACGAGGAAGGCGTGATCCAGTCGGTGGACGTGAATGCGAAGTTCATCAATGGAAAGCCGGCGGGGATTGAGGCCAAGTACGTGATGCGGACTCCAAGGGAGTGGGACAGGTTCATGAGGTTCATGGAGCGGTACTCCAACGCCAATGGCTTGCAATTCGTCAAGACATGA

mRNA sequence

ATGGGATCCTTAAATGAAAATTCTCATCTTCCCAAGTTGTGCGCCTCCTCCTCCTTCCACGGCCGTGCTCTCTCCCTCTCCACCGCCGCAAACTGCGAGACGCTGAACCGGCGGCGGCGGAGGAGGAGGCTGTGGGTCGCGATGGTCCAGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGCGGCTGACGAAGTCGCGAGACGGCACGAACGGGATGGCGATCTTCAAGTTCGAGGAGCCGTCGGTGTTCGACTCCTCGAGCGAGGTCGGGGACATCACCGGGTTCTACATGATCGACGAGGAAGGCGTGATCCAGTCGGTGGACGTGAATGCGAAGTTCATCAATGGAAAGCCGGCGGGGATTGAGGCCAAGTACGTGATGCGGACTCCAAGGGAGTGGGACAGGTTCATGAGGTTCATGGAGCGGTACTCCAACGCCAATGGCTTGCAATTCGTCAAGACATGA

Coding sequence (CDS)

ATGGGATCCTTAAATGAAAATTCTCATCTTCCCAAGTTGTGCGCCTCCTCCTCCTTCCACGGCCGTGCTCTCTCCCTCTCCACCGCCGCAAACTGCGAGACGCTGAACCGGCGGCGGCGGAGGAGGAGGCTGTGGGTCGCGATGGTCCAGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGCGGCTGACGAAGTCGCGAGACGGCACGAACGGGATGGCGATCTTCAAGTTCGAGGAGCCGTCGGTGTTCGACTCCTCGAGCGAGGTCGGGGACATCACCGGGTTCTACATGATCGACGAGGAAGGCGTGATCCAGTCGGTGGACGTGAATGCGAAGTTCATCAATGGAAAGCCGGCGGGGATTGAGGCCAAGTACGTGATGCGGACTCCAAGGGAGTGGGACAGGTTCATGAGGTTCATGGAGCGGTACTCCAACGCCAATGGCTTGCAATTCGTCAAGACATGA

Protein sequence

MGSLNENSHLPKLCASSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKT

Homology

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BLAST of Sed0007731 vs. NCBI nr
Match: XP_008459971.1 (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo] >KAA0039893.1 photosystem II reaction center PSB28 protein [Cucumis melo var. makuwa] >TYK24609.1 photosystem II reaction center PSB28 protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.7e-64
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 15  ASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKS 74
           A SSFHGR+LSLST   C TL RR  R+R W  + MVQPKIQFIQGTDEQTVPDVRLTKS
Sbjct: 36  AFSSFHGRSLSLST-TKCHTLTRRTYRQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKS 95

Query: 75  RDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKY 134
           RDGTNGMAIF+F++PSVFDSS+EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKY
Sbjct: 96  RDGTNGMAIFRFDQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKY 155

Query: 135 VMRTPREWDRFMRFMERYSNANGLQFVK 161
           VMRTPREWDRFMRFMERYSNANGLQFVK
Sbjct: 156 VMRTPREWDRFMRFMERYSNANGLQFVK 182

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BLAST of Sed0007731 vs. NCBI nr
Match: XP_011656766.1 (photosystem II reaction center PSB28 protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 2.8e-63
Identity = 131/165 (79.39%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 4   LNENSHLPKL------CASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQF 63
           L+ +S  PKL       A SSFHGR+LSLST   C TL RR  R+R W  + MV PKIQF
Sbjct: 62  LHPSSTKPKLSYSLHSSAFSSFHGRSLSLST-TKCHTLTRRTYRQRSWNPILMVLPKIQF 121

Query: 64  IQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVD 123
           IQGTDEQT+PDVRLTKSRDGTNGMAIF+FE+PSVFDSS+EVGDITGFYMIDEEG+IQSVD
Sbjct: 122 IQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGMIQSVD 181

Query: 124 VNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 161
           VNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QFVK
Sbjct: 182 VNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVK 225

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BLAST of Sed0007731 vs. NCBI nr
Match: XP_038875127.1 (photosystem II reaction center Psb28 protein [Benincasa hispida])

HSP 1 Score: 250.8 bits (639), Expect = 8.2e-63
Identity = 127/146 (86.99%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 15  ASSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRD 74
           A SSFHGR+LSLS A NC+TL  R  R    + MVQPKIQFIQGTDEQTVPDVRLTKSRD
Sbjct: 36  AFSSFHGRSLSLS-AGNCQTLTHRNGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRD 95

Query: 75  GTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVM 134
           GTNGMAIF+F++PSVFDSS+EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVM
Sbjct: 96  GTNGMAIFRFDQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVM 155

Query: 135 RTPREWDRFMRFMERYSNANGLQFVK 161
           RTPREWDRFMRFMERYSNANGLQFVK
Sbjct: 156 RTPREWDRFMRFMERYSNANGLQFVK 180

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BLAST of Sed0007731 vs. NCBI nr
Match: XP_022157494.1 (photosystem II reaction center Psb28 protein [Momordica charantia])

HSP 1 Score: 248.4 bits (633), Expect = 4.1e-62
Identity = 124/148 (83.78%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 17  SSFHGRA----LSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKS 76
           S+FHGR+    L+L +A+ C+TL    RRRR  +AMVQPKIQFIQGTDEQTVPDVRLTKS
Sbjct: 34  STFHGRSLTLKLTLGSASRCQTL----RRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKS 93

Query: 77  RDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKY 136
           RDG+NGMAIF+FE+PSVFDSS+EVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKY
Sbjct: 94  RDGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKY 153

Query: 137 VMRTPREWDRFMRFMERYSNANGLQFVK 161
           VMRTPREWDRFMRFMERYSNANGLQFVK
Sbjct: 154 VMRTPREWDRFMRFMERYSNANGLQFVK 177

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BLAST of Sed0007731 vs. NCBI nr
Match: XP_023005079.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 244.6 bits (623), Expect = 5.9e-61
Identity = 126/152 (82.89%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 15  ASSSFHGRALSLSTAANCETLNRR------RRRRRLWVAMVQPKIQFIQGTDEQTVPDVR 74
           A S+F+GR+LS+S    C+TL RR      R R  + + MVQPKIQFIQGTDEQTVPDVR
Sbjct: 70  AFSAFYGRSLSVS-GGKCQTLGRRRCEAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVR 129

Query: 75  LTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGI 134
           LTKSRDGTNGMAIFKF+EPSVFDSS+EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGI
Sbjct: 130 LTKSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGI 189

Query: 135 EAKYVMRTPREWDRFMRFMERYSNANGLQFVK 161
           EAKYVMRTPREWDRFMRFMERYSNANGLQFVK
Sbjct: 190 EAKYVMRTPREWDRFMRFMERYSNANGLQFVK 220

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BLAST of Sed0007731 vs. ExPASy Swiss-Prot
Match: Q0JG75 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSB28 PE=2 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 1.0e-52
Identity = 105/150 (70.00%), Postives = 122/150 (81.33%), Query Frame = 0


Query: 11  PKLCASSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLT 70
           P     SSF G +L         +L+R R   ++ +   +P IQFIQGTDEQT+PDVRLT
Sbjct: 31  PSQSLHSSFGGVSLQCRRTKPA-SLHRSRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLT 90

Query: 71  KSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEA 130
           KSRDGTNG+AIF F++PSVFDSS+E+GDITGFYMID+EGV+QSVDV+AKF+NGKPA IEA
Sbjct: 91  KSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEA 150

Query: 131 KYVMRTPREWDRFMRFMERYSNANGLQFVK 161
           KYVMRTPREWDRFMRFMERYS ANGLQFVK
Sbjct: 151 KYVMRTPREWDRFMRFMERYSQANGLQFVK 179

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BLAST of Sed0007731 vs. ExPASy Swiss-Prot
Match: Q8W0Y8 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-49
Identity = 96/145 (66.21%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 16  SSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDG 75
           SSSF G  +SL  A        R  +      MV+P +QFIQGTDE T+PDV+LT+SRDG
Sbjct: 37  SSSFTGSPVSLPRAQPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDG 96

Query: 76  TNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMR 135
           +NGMA+F F++PSVFDSS EVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR
Sbjct: 97  SNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMR 156

Query: 136 TPREWDRFMRFMERYSNANGLQFVK 161
           +P+EWDRFMRFMERYS+ NGLQFVK
Sbjct: 157 SPKEWDRFMRFMERYSDQNGLQFVK 181

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BLAST of Sed0007731 vs. ExPASy Swiss-Prot
Match: P49508 (Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=psb28 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-34
Identity = 65/113 (57.52%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 49  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFD-SSSEVGDITGFYMIDE 108
           ++ KIQFI+G DE+ +PDVRLT+SRDG+ G A F+F+ P++ D S+++ G+ITG Y+ID+
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60

Query: 109 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 161
           EG +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 61  EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

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BLAST of Sed0007731 vs. ExPASy Swiss-Prot
Match: Q00UI6 (Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus tauri OX=70448 GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.9e-34
Identity = 72/138 (52.17%), Postives = 98/138 (71.01%), Query Frame = 0


Query: 23  ALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF 82
           AL+ S  A+ +  ++  RR  +  A     IQF++G +E  VP+VRLT+S+DG+NG A F
Sbjct: 11  ALARSFNASTKRFSKSARRSVVVRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFF 70

Query: 83  KFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDR 142
            F +P VF++    GDITG ++ DEEG + +VDVNAKF+NGKP GIEA+YVM+T  +W+R
Sbjct: 71  IFSDPDVFENGQ--GDITGMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNR 130

Query: 143 FMRFMERYSNANGLQFVK 161
           FMRFMERY+  NGL F K
Sbjct: 131 FMRFMERYAEDNGLGFSK 146

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BLAST of Sed0007731 vs. ExPASy Swiss-Prot
Match: A0T0H5 (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) OX=556484 GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.9e-34
Identity = 63/113 (55.75%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 49  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFD-SSSEVGDITGFYMIDE 108
           ++ KIQFI+G DE+ +PDVRLT+S+DG+ G A F+F+ P++ D ++++ G+ITG Y+IDE
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60

Query: 109 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 161
           EG++++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 61  EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

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BLAST of Sed0007731 vs. ExPASy TrEMBL
Match: A0A5A7TA18 (Photosystem II reaction center Psb28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001560 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.8e-64
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 15  ASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKS 74
           A SSFHGR+LSLST   C TL RR  R+R W  + MVQPKIQFIQGTDEQTVPDVRLTKS
Sbjct: 36  AFSSFHGRSLSLST-TKCHTLTRRTYRQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKS 95

Query: 75  RDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKY 134
           RDGTNGMAIF+F++PSVFDSS+EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKY
Sbjct: 96  RDGTNGMAIFRFDQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKY 155

Query: 135 VMRTPREWDRFMRFMERYSNANGLQFVK 161
           VMRTPREWDRFMRFMERYSNANGLQFVK
Sbjct: 156 VMRTPREWDRFMRFMERYSNANGLQFVK 182

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BLAST of Sed0007731 vs. ExPASy TrEMBL
Match: A0A1S3CCN2 (Photosystem II reaction center Psb28 protein OS=Cucumis melo OX=3656 GN=LOC103498926 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.8e-64
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 15  ASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKS 74
           A SSFHGR+LSLST   C TL RR  R+R W  + MVQPKIQFIQGTDEQTVPDVRLTKS
Sbjct: 36  AFSSFHGRSLSLST-TKCHTLTRRTYRQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKS 95

Query: 75  RDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKY 134
           RDGTNGMAIF+F++PSVFDSS+EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKY
Sbjct: 96  RDGTNGMAIFRFDQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKY 155

Query: 135 VMRTPREWDRFMRFMERYSNANGLQFVK 161
           VMRTPREWDRFMRFMERYSNANGLQFVK
Sbjct: 156 VMRTPREWDRFMRFMERYSNANGLQFVK 182

[Close]

BLAST of Sed0007731 vs. ExPASy TrEMBL
Match: A0A0A0K9C2 (Photosystem II reaction center Psb28 protein OS=Cucumis sativus OX=3659 GN=Csa_6G087980 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.4e-63
Identity = 131/165 (79.39%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 4   LNENSHLPKL------CASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQF 63
           L+ +S  PKL       A SSFHGR+LSLST   C TL RR  R+R W  + MV PKIQF
Sbjct: 212 LHPSSTKPKLSYSLHSSAFSSFHGRSLSLST-TKCHTLTRRTYRQRSWNPILMVLPKIQF 271

Query: 64  IQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVD 123
           IQGTDEQT+PDVRLTKSRDGTNGMAIF+FE+PSVFDSS+EVGDITGFYMIDEEG+IQSVD
Sbjct: 272 IQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGMIQSVD 331

Query: 124 VNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 161
           VNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QFVK
Sbjct: 332 VNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVK 375

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BLAST of Sed0007731 vs. ExPASy TrEMBL
Match: A0A6J1DWM5 (Photosystem II reaction center Psb28 protein OS=Momordica charantia OX=3673 GN=LOC111024184 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.0e-62
Identity = 124/148 (83.78%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 17  SSFHGRA----LSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKS 76
           S+FHGR+    L+L +A+ C+TL    RRRR  +AMVQPKIQFIQGTDEQTVPDVRLTKS
Sbjct: 34  STFHGRSLTLKLTLGSASRCQTL----RRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKS 93

Query: 77  RDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKY 136
           RDG+NGMAIF+FE+PSVFDSS+EVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKY
Sbjct: 94  RDGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKY 153

Query: 137 VMRTPREWDRFMRFMERYSNANGLQFVK 161
           VMRTPREWDRFMRFMERYSNANGLQFVK
Sbjct: 154 VMRTPREWDRFMRFMERYSNANGLQFVK 177

[Close]

BLAST of Sed0007731 vs. ExPASy TrEMBL
Match: A0A6J1KY50 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111498173 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.9e-61
Identity = 126/152 (82.89%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 15  ASSSFHGRALSLSTAANCETLNRR------RRRRRLWVAMVQPKIQFIQGTDEQTVPDVR 74
           A S+F+GR+LS+S    C+TL RR      R R  + + MVQPKIQFIQGTDEQTVPDVR
Sbjct: 70  AFSAFYGRSLSVS-GGKCQTLGRRRCEAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVR 129

Query: 75  LTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGI 134
           LTKSRDGTNGMAIFKF+EPSVFDSS+EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGI
Sbjct: 130 LTKSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGI 189

Query: 135 EAKYVMRTPREWDRFMRFMERYSNANGLQFVK 161
           EAKYVMRTPREWDRFMRFMERYSNANGLQFVK
Sbjct: 190 EAKYVMRTPREWDRFMRFMERYSNANGLQFVK 220

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BLAST of Sed0007731 vs. TAIR 10
Match: AT4G28660.1 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-50
Identity = 96/145 (66.21%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 16  SSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDG 75
           SSSF G  +SL  A        R  +      MV+P +QFIQGTDE T+PDV+LT+SRDG
Sbjct: 37  SSSFTGSPVSLPRAQPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDG 96

Query: 76  TNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMR 135
           +NGMA+F F++PSVFDSS EVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR
Sbjct: 97  SNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMR 156

Query: 136 TPREWDRFMRFMERYSNANGLQFVK 161
           +P+EWDRFMRFMERYS+ NGLQFVK
Sbjct: 157 SPKEWDRFMRFMERYSDQNGLQFVK 181

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BLAST of Sed0007731 vs. TAIR 10
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-50
Identity = 96/145 (66.21%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 16  SSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDG 75
           SSSF G  +SL  A        R  +      MV+P +QFIQGTDE T+PDV+LT+SRDG
Sbjct: 52  SSSFTGSPVSLPRAQPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDG 111

Query: 76  TNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMR 135
           +NGMA+F F++PSVFDSS EVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR
Sbjct: 112 SNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMR 171

Query: 136 TPREWDRFMRFMERYSNANGLQFVK 161
           +P+EWDRFMRFMERYS+ NGLQFVK
Sbjct: 172 SPKEWDRFMRFMERYSDQNGLQFVK 196

The following BLAST results are available for this feature:

BLAST of Sed0007731 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459971.1	5.7e-64	87.16	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis ...	[more]
XP_011656766.1	2.8e-63	79.39	photosystem II reaction center PSB28 protein, chloroplastic [Cucumis sativus]	[more]
XP_038875127.1	8.2e-63	86.99	photosystem II reaction center Psb28 protein [Benincasa hispida]	[more]
XP_022157494.1	4.1e-62	83.78	photosystem II reaction center Psb28 protein [Momordica charantia]	[more]
XP_023005079.1	5.9e-61	82.89	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxi...	[more]

BLAST of Sed0007731 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JG75	1.0e-52	70.00	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
Q8W0Y8	1.8e-49	66.21	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
P49508	1.3e-34	57.52	Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=...	[more]
Q00UI6	2.9e-34	52.17	Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus taur...	[more]
A0T0H5	2.9e-34	55.75	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]

BLAST of Sed0007731 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TA18	2.8e-64	87.16	Photosystem II reaction center Psb28 protein OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CCN2	2.8e-64	87.16	Photosystem II reaction center Psb28 protein OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0K9C2	1.4e-63	79.39	Photosystem II reaction center Psb28 protein OS=Cucumis sativus OX=3659 GN=Csa_6...	[more]
A0A6J1DWM5	2.0e-62	83.78	Photosystem II reaction center Psb28 protein OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1KY50	2.9e-61	82.89	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Sed0007731 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28660.1	1.3e-50	66.21	photosystem II reaction center PSB28 protein	[more]
AT4G28660.2	1.3e-50	66.21	photosystem II reaction center PSB28 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005610	Photosystem II Psb28, class 1	TIGRFAM	TIGR03047	TIGR03047	coord: 53..159 e-value: 1.6E-45 score: 151.8
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 53..158 e-value: 1.5E-43 score: 147.4
IPR005610	Photosystem II Psb28, class 1	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 15..160
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 50..159 score: 30.521809
IPR038676	Photosystem II Psb28, class 1 superfamily	GENE3D	2.40.30.220	Photosystem II Psb28	coord: 51..161 e-value: 1.3E-45 score: 156.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007731.1	Sed0007731.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II