Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAAGATCATCATCATCCTCCTCTCCATATCTCTGAAAAACCCTTTTCATTACTCCAACAAAATGACTTATTCGTCAACAAAATCCTCTCAAGGCCCGACTCCTCGTTCGGCCGATCTGCCCGTCTCCCCGCCTGCCGCCTGCCCGGTCGAATCCCCTTCAATTGGGAGGCTCAGCCCGGCCTGCCCAAACACCATTCGTCGGCAATTCCCCCGCCGGCAGACCTTCCGCCGCCCGCCGCCGCCGGTTCCAACACTACACACGTAGTCCCCAAACTGGACCCGGTTTATAAGGTTTGGTTTTTGAAGAAGCCCATGAGAAGATTGAGGAGTGGGGTGGTTAAGCAAAACGGTGCGTTTGGATCGTCCTCCTCCCGACGACATGTCGTTCGTGAGAGTGAGAGTGAGAGTGGGAGAAAATTGAACGACGAGTCGTCGCTGTCTTGTGTTACGTATTCTTTGTCTCGTAGCTCTTCTTTGCCTTCGTCGTCAAATGGCTACGGGCGACGGCGATTTAAACTCGGCGGTTTGGTTAAAGGCTTCATAATGTGGGCGTTTTGA
mRNA sequence
ATGGCAAAAGATCATCATCATCCTCCTCTCCATATCTCTGAAAAACCCTTTTCATTACTCCAACAAAATGACTTATTCGTCAACAAAATCCTCTCAAGGCCCGACTCCTCGTTCGGCCGATCTGCCCGTCTCCCCGCCTGCCGCCTGCCCGGTCGAATCCCCTTCAATTGGGAGGCTCAGCCCGGCCTGCCCAAACACCATTCGTCGGCAATTCCCCCGCCGGCAGACCTTCCGCCGCCCGCCGCCGCCGGTTCCAACACTACACACGTAGTCCCCAAACTGGACCCGGTTTATAAGGTTTGGTTTTTGAAGAAGCCCATGAGAAGATTGAGGAGTGGGGTGGTTAAGCAAAACGGTGCGTTTGGATCGTCCTCCTCCCGACGACATGTCGTTCGTGAGAGTGAGAGTGAGAGTGGGAGAAAATTGAACGACGAGTCGTCGCTGTCTTGTGTTACGTATTCTTTGTCTCGTAGCTCTTCTTTGCCTTCGTCGTCAAATGGCTACGGGCGACGGCGATTTAAACTCGGCGGTTTGGTTAAAGGCTTCATAATGTGGGCGTTTTGA
Coding sequence (CDS)
ATGGCAAAAGATCATCATCATCCTCCTCTCCATATCTCTGAAAAACCCTTTTCATTACTCCAACAAAATGACTTATTCGTCAACAAAATCCTCTCAAGGCCCGACTCCTCGTTCGGCCGATCTGCCCGTCTCCCCGCCTGCCGCCTGCCCGGTCGAATCCCCTTCAATTGGGAGGCTCAGCCCGGCCTGCCCAAACACCATTCGTCGGCAATTCCCCCGCCGGCAGACCTTCCGCCGCCCGCCGCCGCCGGTTCCAACACTACACACGTAGTCCCCAAACTGGACCCGGTTTATAAGGTTTGGTTTTTGAAGAAGCCCATGAGAAGATTGAGGAGTGGGGTGGTTAAGCAAAACGGTGCGTTTGGATCGTCCTCCTCCCGACGACATGTCGTTCGTGAGAGTGAGAGTGAGAGTGGGAGAAAATTGAACGACGAGTCGTCGCTGTCTTGTGTTACGTATTCTTTGTCTCGTAGCTCTTCTTTGCCTTCGTCGTCAAATGGCTACGGGCGACGGCGATTTAAACTCGGCGGTTTGGTTAAAGGCTTCATAATGTGGGCGTTTTGA
Protein sequence
MAKDHHHPPLHISEKPFSLLQQNDLFVNKILSRPDSSFGRSARLPACRLPGRIPFNWEAQPGLPKHHSSAIPPPADLPPPAAAGSNTTHVVPKLDPVYKVWFLKKPMRRLRSGVVKQNGAFGSSSSRRHVVRESESESGRKLNDESSLSCVTYSLSRSSSLPSSSNGYGRRRFKLGGLVKGFIMWAF
Homology
BLAST of Sed0007534 vs. NCBI nr
Match:
KAA0058272.1 (hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa])
HSP 1 Score: 196.1 bits (497), Expect = 2.8e-46
Identity = 125/196 (63.78%), Postives = 141/196 (71.94%), Query Frame = 0
Query: 2 AKDHHHPPLH-ISEKPFSLLQQNDLFVNKILSRPDSSFGRSARLPACRLPGRIPFNWEAQ 61
AKDH LH +SEKPFSLLQ N FV+KILSR +SSFGRSARLPAC LPG+IPFNWE Q
Sbjct: 3 AKDH---TLHRLSEKPFSLLQANQFFVHKILSR-NSSFGRSARLPACGLPGQIPFNWETQ 62
Query: 62 PGLPKHHSSAIPPPADLPPPAAAG---SNTTHVVPKLDPVYKVWFLKKPMRRLRSGVVKQ 121
PGLPK+ S PPPA+LPPP+++ S T HVVPK PV K+WF K R+ R VK+
Sbjct: 63 PGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPV-KIWFWNKQRRKSRR-AVKK 122
Query: 122 NGAFGSSSS-RRHVVRESESESGRKLNDE----SSLSCVTYSLSRSSSLPSSSNGY-GRR 181
NGA GSSSS RRHV RESE RK NDE SSLSC++YSLS +SS SSS+ Y RR
Sbjct: 123 NGALGSSSSPRRHVDRESEF-CRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRR 182
Query: 182 RFKLGGLVKGFIMWAF 188
R KLG L K FI WAF
Sbjct: 183 RSKLGSLAKEFIRWAF 191
BLAST of Sed0007534 vs. NCBI nr
Match:
KGN65459.1 (hypothetical protein Csa_020126 [Cucumis sativus])
HSP 1 Score: 194.5 bits (493), Expect = 8.1e-46
Identity = 120/195 (61.54%), Postives = 141/195 (72.31%), Query Frame = 0
Query: 2 AKDHHHPPLH-ISEKPFSLLQQNDLFVNKILSRPDSSFGRSARLPACRLPGRIPFNWEAQ 61
AKDH LH +SEKPFSLLQ N LFV+KILSR +SSFGRSARLPAC LPG++PFNWEAQ
Sbjct: 3 AKDH---TLHRLSEKPFSLLQANQLFVHKILSR-NSSFGRSARLPACGLPGQVPFNWEAQ 62
Query: 62 PGLPKHHSSAIPPPADLPPPAAAG---SNTTHVVPKLDPVYKVWFLKKPMRRLRSGVVKQ 121
PGLPK+ S PPP LPPP+++ S T HVVPK PV K+WF K R+ R VK+
Sbjct: 63 PGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPV-KIWFWNKQRRKSRR-AVKK 122
Query: 122 NGAFGSSSSRRHVVRESESESGRKLNDE----SSLSCVTYSLSRSSSLPSSSNGY-GRRR 181
+GA GSSS RRHV R+SE +K NDE SSLSC++YS+S +SS SSS+ Y RRR
Sbjct: 123 SGALGSSSPRRHVDRDSEF-CRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRR 182
Query: 182 FKLGGLVKGFIMWAF 188
+KLG L K FI WAF
Sbjct: 183 YKLGSLAKEFIRWAF 190
BLAST of Sed0007534 vs. NCBI nr
Match:
TYK11824.1 (hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa])
HSP 1 Score: 194.1 bits (492), Expect = 1.1e-45
Identity = 124/196 (63.27%), Postives = 140/196 (71.43%), Query Frame = 0
Query: 2 AKDHHHPPLH-ISEKPFSLLQQNDLFVNKILSRPDSSFGRSARLPACRLPGRIPFNWEAQ 61
AKDH LH +SEKPFSLLQ N FV+KILSR +SSFGRSARLPAC LPG+IPFNWE Q
Sbjct: 3 AKDH---TLHRLSEKPFSLLQANQFFVHKILSR-NSSFGRSARLPACGLPGQIPFNWETQ 62
Query: 62 PGLPKHHSSAIPPPADLPPPAAAG---SNTTHVVPKLDPVYKVWFLKKPMRRLRSGVVKQ 121
PGLPK+ S PPPA+LPPP+++ S T HVVPK PV K+WF K R+ R VK+
Sbjct: 63 PGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPV-KIWFWNKQRRKSRR-AVKK 122
Query: 122 NGAFGSSSS-RRHVVRESESESGRKLND----ESSLSCVTYSLSRSSSLPSSSNGY-GRR 181
NGA GSSSS RRHV RESE RK ND SSLSC++YSLS +SS SSS+ Y RR
Sbjct: 123 NGALGSSSSPRRHVDRESEF-CRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRR 182
Query: 182 RFKLGGLVKGFIMWAF 188
R KLG L K FI WAF
Sbjct: 183 RSKLGSLAKEFIRWAF 191
BLAST of Sed0007534 vs. NCBI nr
Match:
KAG6589705.1 (Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 178.7 bits (452), Expect = 4.6e-41
Identity = 112/186 (60.22%), Postives = 128/186 (68.82%), Query Frame = 0
Query: 1 MAKDHHHPPLHISEKPFSLLQQNDLFVNKILSRPDSSFGRSARLPACRLPGRIPFNWEAQ 60
M +H LH+SE PFSLLQ N+LFV+KILSR +SS GRSARLPACRLPG+IPF WEAQ
Sbjct: 1 MGNEHR---LHLSENPFSLLQANELFVHKILSR-NSSVGRSARLPACRLPGQIPFIWEAQ 60
Query: 61 PGLPKHHSSAIPPPADLPPPAAAGSNTTHVVPKLDPVYKVWFLKKPMRRLRSGVVKQNGA 120
PGLPK S P P S T H VP+ K+WF KP ++LR+ VVK+NGA
Sbjct: 61 PGLPKDKPSENLQPPPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRN-VVKKNGA 120
Query: 121 FG-SSSSRRHVVRESESESGRKLNDE--SSLSCVTYSLSRSSSLPSSSNGYGRRRFKLGG 180
FG SSSSRRHV ESE RK NDE SSLSC+++SLS SS SSSNGY RRR KL
Sbjct: 121 FGSSSSSRRHV--NQESEFYRKSNDESSSSLSCISHSLSSSS---SSSNGYARRRSKLSS 176
Query: 181 LVKGFI 184
L KGF+
Sbjct: 181 LAKGFL 176
BLAST of Sed0007534 vs. NCBI nr
Match:
XP_022987494.1 (uncharacterized protein LOC111485037 [Cucurbita maxima])
HSP 1 Score: 178.7 bits (452), Expect = 4.6e-41
Identity = 118/197 (59.90%), Postives = 132/197 (67.01%), Query Frame = 0
Query: 1 MAKDHHHPPLHISEKPFSLLQQNDLFVNKILSRPDSSFGRSARLPACRLPGRIPFNWEAQ 60
M DH LH SE PFSLLQ N+LFV+KILSR +SS GRSARLPACRLPG+IPF WEAQ
Sbjct: 1 MGNDHR---LHPSENPFSLLQANELFVHKILSR-NSSVGRSARLPACRLPGQIPFIWEAQ 60
Query: 61 PGLPKHHSS--AIPPPADLPPPAAAG-SNTTHVVPKLDPVYKVWFLKKPMRRLRSGVVKQ 120
PGLPK S PPP PP G S T H VPK K+W KP ++LR+ VVK+
Sbjct: 61 PGLPKDKPSENLHPPP---PPNYVDGTSKTPHQVPKQQEAAKIWSWMKPRKKLRN-VVKK 120
Query: 121 NGAFGSSSSRRHVVRESESESGRKLNDE-------SSLSCVTYSLSRSSSLPSSSNGYGR 180
NGAFGSSSS R V + ESE RK NDE SSLSC+++SLS SS SSSNGY R
Sbjct: 121 NGAFGSSSSSRPHVNQ-ESEFCRKSNDESSSSTTPSSLSCISHSLSSSS---SSSNGYAR 180
Query: 181 RRFKLGGLVKGFIMWAF 188
RR KL L KGF+ WAF
Sbjct: 181 RRSKLSSLAKGFLRWAF 185
BLAST of Sed0007534 vs. ExPASy TrEMBL
Match:
A0A5A7UQX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005980 PE=4 SV=1)
HSP 1 Score: 196.1 bits (497), Expect = 1.4e-46
Identity = 125/196 (63.78%), Postives = 141/196 (71.94%), Query Frame = 0
Query: 2 AKDHHHPPLH-ISEKPFSLLQQNDLFVNKILSRPDSSFGRSARLPACRLPGRIPFNWEAQ 61
AKDH LH +SEKPFSLLQ N FV+KILSR +SSFGRSARLPAC LPG+IPFNWE Q
Sbjct: 3 AKDH---TLHRLSEKPFSLLQANQFFVHKILSR-NSSFGRSARLPACGLPGQIPFNWETQ 62
Query: 62 PGLPKHHSSAIPPPADLPPPAAAG---SNTTHVVPKLDPVYKVWFLKKPMRRLRSGVVKQ 121
PGLPK+ S PPPA+LPPP+++ S T HVVPK PV K+WF K R+ R VK+
Sbjct: 63 PGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPV-KIWFWNKQRRKSRR-AVKK 122
Query: 122 NGAFGSSSS-RRHVVRESESESGRKLNDE----SSLSCVTYSLSRSSSLPSSSNGY-GRR 181
NGA GSSSS RRHV RESE RK NDE SSLSC++YSLS +SS SSS+ Y RR
Sbjct: 123 NGALGSSSSPRRHVDRESEF-CRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRR 182
Query: 182 RFKLGGLVKGFIMWAF 188
R KLG L K FI WAF
Sbjct: 183 RSKLGSLAKEFIRWAF 191
BLAST of Sed0007534 vs. ExPASy TrEMBL
Match:
A0A0A0LWV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1)
HSP 1 Score: 194.5 bits (493), Expect = 3.9e-46
Identity = 120/195 (61.54%), Postives = 141/195 (72.31%), Query Frame = 0
Query: 2 AKDHHHPPLH-ISEKPFSLLQQNDLFVNKILSRPDSSFGRSARLPACRLPGRIPFNWEAQ 61
AKDH LH +SEKPFSLLQ N LFV+KILSR +SSFGRSARLPAC LPG++PFNWEAQ
Sbjct: 3 AKDH---TLHRLSEKPFSLLQANQLFVHKILSR-NSSFGRSARLPACGLPGQVPFNWEAQ 62
Query: 62 PGLPKHHSSAIPPPADLPPPAAAG---SNTTHVVPKLDPVYKVWFLKKPMRRLRSGVVKQ 121
PGLPK+ S PPP LPPP+++ S T HVVPK PV K+WF K R+ R VK+
Sbjct: 63 PGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPV-KIWFWNKQRRKSRR-AVKK 122
Query: 122 NGAFGSSSSRRHVVRESESESGRKLNDE----SSLSCVTYSLSRSSSLPSSSNGY-GRRR 181
+GA GSSS RRHV R+SE +K NDE SSLSC++YS+S +SS SSS+ Y RRR
Sbjct: 123 SGALGSSSPRRHVDRDSEF-CRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRR 182
Query: 182 FKLGGLVKGFIMWAF 188
+KLG L K FI WAF
Sbjct: 183 YKLGSLAKEFIRWAF 190
BLAST of Sed0007534 vs. ExPASy TrEMBL
Match:
A0A5D3CKX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00370 PE=4 SV=1)
HSP 1 Score: 194.1 bits (492), Expect = 5.1e-46
Identity = 124/196 (63.27%), Postives = 140/196 (71.43%), Query Frame = 0
Query: 2 AKDHHHPPLH-ISEKPFSLLQQNDLFVNKILSRPDSSFGRSARLPACRLPGRIPFNWEAQ 61
AKDH LH +SEKPFSLLQ N FV+KILSR +SSFGRSARLPAC LPG+IPFNWE Q
Sbjct: 3 AKDH---TLHRLSEKPFSLLQANQFFVHKILSR-NSSFGRSARLPACGLPGQIPFNWETQ 62
Query: 62 PGLPKHHSSAIPPPADLPPPAAAG---SNTTHVVPKLDPVYKVWFLKKPMRRLRSGVVKQ 121
PGLPK+ S PPPA+LPPP+++ S T HVVPK PV K+WF K R+ R VK+
Sbjct: 63 PGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPV-KIWFWNKQRRKSRR-AVKK 122
Query: 122 NGAFGSSSS-RRHVVRESESESGRKLND----ESSLSCVTYSLSRSSSLPSSSNGY-GRR 181
NGA GSSSS RRHV RESE RK ND SSLSC++YSLS +SS SSS+ Y RR
Sbjct: 123 NGALGSSSSPRRHVDRESEF-CRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRR 182
Query: 182 RFKLGGLVKGFIMWAF 188
R KLG L K FI WAF
Sbjct: 183 RSKLGSLAKEFIRWAF 191
BLAST of Sed0007534 vs. ExPASy TrEMBL
Match:
A0A6J1JJ17 (uncharacterized protein LOC111485037 OS=Cucurbita maxima OX=3661 GN=LOC111485037 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 2.2e-41
Identity = 118/197 (59.90%), Postives = 132/197 (67.01%), Query Frame = 0
Query: 1 MAKDHHHPPLHISEKPFSLLQQNDLFVNKILSRPDSSFGRSARLPACRLPGRIPFNWEAQ 60
M DH LH SE PFSLLQ N+LFV+KILSR +SS GRSARLPACRLPG+IPF WEAQ
Sbjct: 1 MGNDHR---LHPSENPFSLLQANELFVHKILSR-NSSVGRSARLPACRLPGQIPFIWEAQ 60
Query: 61 PGLPKHHSS--AIPPPADLPPPAAAG-SNTTHVVPKLDPVYKVWFLKKPMRRLRSGVVKQ 120
PGLPK S PPP PP G S T H VPK K+W KP ++LR+ VVK+
Sbjct: 61 PGLPKDKPSENLHPPP---PPNYVDGTSKTPHQVPKQQEAAKIWSWMKPRKKLRN-VVKK 120
Query: 121 NGAFGSSSSRRHVVRESESESGRKLNDE-------SSLSCVTYSLSRSSSLPSSSNGYGR 180
NGAFGSSSS R V + ESE RK NDE SSLSC+++SLS SS SSSNGY R
Sbjct: 121 NGAFGSSSSSRPHVNQ-ESEFCRKSNDESSSSTTPSSLSCISHSLSSSS---SSSNGYAR 180
Query: 181 RRFKLGGLVKGFIMWAF 188
RR KL L KGF+ WAF
Sbjct: 181 RRSKLSSLAKGFLRWAF 185
BLAST of Sed0007534 vs. ExPASy TrEMBL
Match:
A0A3S4PJS0 (Putative OSBPoxysterol binding protein-related protein 4B OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02056300 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 51/139 (36.69%), Postives = 73/139 (52.52%), Query Frame = 0
Query: 18 SLLQQNDLFVNKILSRPDSSFGRSARLPACRLPGRIPFNWEAQPGLPKHHSSAIPPPADL 77
SLL+ +LF N+ILSR DSS G S+R+ ++ G++PF WEA+PG+PK A P P
Sbjct: 30 SLLEGEELFFNRILSR-DSSKGFSSRV-YYQVAGKVPFAWEAKPGIPKITHEAAPLPPLS 89
Query: 78 PPPAAAGSNTTHV-VPKLDPVYKVWF--LKKPMRRLRSGVVKQNGAFGSSSSRRHVVRES 137
PPPA + +H V K ++WF KK + +S Q G+ S S + +
Sbjct: 90 PPPAMLSLSVSHTPVSKDSNQSRLWFWKKKKATKAQKSESQSQTGSEVSFESWSYEGDST 149
Query: 138 ESESGRKLNDESSLSCVTY 154
S S N SS S ++
Sbjct: 150 WSTSPSPCNSSSSSSLYSF 166
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0058272.1 | 2.8e-46 | 63.78 | hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa] | [more] |
KGN65459.1 | 8.1e-46 | 61.54 | hypothetical protein Csa_020126 [Cucumis sativus] | [more] |
TYK11824.1 | 1.1e-45 | 63.27 | hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa] | [more] |
KAG6589705.1 | 4.6e-41 | 60.22 | Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. s... | [more] |
XP_022987494.1 | 4.6e-41 | 59.90 | uncharacterized protein LOC111485037 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UQX0 | 1.4e-46 | 63.78 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A0A0LWV3 | 3.9e-46 | 61.54 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1 | [more] |
A0A5D3CKX4 | 5.1e-46 | 63.27 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6J1JJ17 | 2.2e-41 | 59.90 | uncharacterized protein LOC111485037 OS=Cucurbita maxima OX=3661 GN=LOC111485037... | [more] |
A0A3S4PJS0 | 1.8e-06 | 36.69 | Putative OSBPoxysterol binding protein-related protein 4B OS=Cinnamomum micranth... | [more] |
Match Name | E-value | Identity | Description | |