Sed0007503 (gene) Chayote v1

Overview


Name	Sed0007503
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RRM domain-containing protein
Location	LG11: 823115 .. 828772 (-)
RNA-Seq Expression	Sed0007503
Synteny	Sed0007503

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTTACTTTTTAGGGCATATTCCATTCCTTGCCTTCAGTCTCGATGTGTCGTTAGGTTTTGGCGTTACTTCCGACATGTCGATTTACGCTTCCTATAAATCAGCACTATCAATGGAAAAGAGAGTTCAATAGTGTTCTTGTGGAGTTTCTTCGTTCTCCTCCGAGCTCGGAGTTTCGCCGGAGATTATGACGATGGACGATGACAGCTCGATTTACGTCGGAGGACTTCCGTACGACGCCACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGGTCAAATTTCTCTTCACTTTCCTTAATTTCTCTCGTTTTAAGAATTATGCAGCTCTTTAGGAGGTGTTTGGATGAGGTTTTCGATGAGGAATTAGAAATTGAGATTTTTGTAGAATAGTTAGTGATTATAGGTGGTTTGGATGTAGGTTTAAAATAATGAGTTATTTTGAGTAGTTAAAAATGAATGATTAGAAATGAAGTTTTATTTTGAGTAATTAAAAATGAATGGTTTGAAATGAGAAGTTATTTTGAGTAGTTAGAAATGAGGAGTTGTTTTGTGTGGTTACAAAAACTTGTTTGGATGTAGTTTTTTTAGGAGTAATTAGTCAAATACTCAATCTAAATAGACTAAATCCTCCTTAAATTTGACAAACAAACACCCCCTAGGTGTGAGATTGAATATTTGATTCTTTGGATGTAAGTTTGTGGTTTCATTGCTATTTGAAGTTTGAAGATAGTTTGAACTCAATTGTGGGGCTTAGACGTGAGTAGTAGGCATCTTAGAGAATGGAGATTGTATCATTGGTTTTAATAACTGGACGTGGTGGAAGAAGATGGATTCTTGGTTAAGACTCTTTGGATTTAAGTTTTTGGATTTATCTTTCGATTTAAGTTTGTGTTTAGTCTTTTCAATTTACAAAGCTTGCTTGGGTCCCCAAGTGGGGGCGTGGTTGGTAGAGGCTTGACGTGTCTAAGGTGTTGGTAAATATAATTGAATTTATTCCAACCCGTTAGTTTAAGTTTTTGGATTGATTGGTGATTTAATATGTTTTGACATGGTATTAGAGGAGGAGGTCGTGAGTTCAAATTCTTGTTGAGTCATGTCATTTTCAAATAATATTGATTTCCATTTGGTGCGTATTCTCAAAATTTTGAAACCTGTAGGTCAGGGAGAGTATTGGTAAATATAACTAAATTTACCTCAACCCATCGGCTTATGCTTTTGGGTTGATTGGTCTTTTAACATGTTTCAACACAAGGTATGTTCCCTTGGGGGCCCTAAGTTCAAAACGAATGAGTGAACTAAATTATAAAATCCCTTGGCCTGGGTGCCCTGGTTATGTTGTAGTGTGAAGCTTAGATTCCCGATTATCAAATTTTTTTTTGCAAAGCTGCTTGAAGTTTGGAGAGTGGTTTGAACTCAATTCAATTGTGTAGCTTAAGACTTTTTTATGCAGTTTAGACGTGGGTAGTAAGTATTTTAGAGAACGGATCATGCTCACTAGAGATTGTATCGTTGGTTTTCACTTGGTTTTAATTACTGAACATGGGAAGAAGCTGGGTTCCCGGTGAAGACTCTTCGTCATTGCTGAGAATTTGGGTTGGTCTATTTTTGTTTCTATTGAATGTTTCCTGTTATTTGTTTTCTATTGTATTTGCTAAAATGCTTCCATTACGCTTGTTGAACTTATGATGTCTTTGAATGTCCCTGTTTCATGAAGTTTCCATATAGAATGTGATTGTAGCTTAACGCTTTGATTTCTGTCATCAGATTGTTAATGATCGTAGTACTAGAGGAAAGTGTTATGGTTTCGTTACCTTTACAAACCCTCGATCTGCAATTGATGCCATTAATGATATGGATGGAAGGGTATGTTCATTTTATAGCTGGAAGTAAAAAATTTAATGGTTGGTTGTTTGTATGTTTTCCATAATGTTTTTGTCTTGACTTCTAACAATGTAAGGCTTTGAATTAGACTATAGAAGGGCGAGTTGTCAAAGTTAATGGAGTGAATACCAGAGGTGGGAGAAGGTTTGGTAGAGACAGTAATCGGTTCAATGGAGAGAGGGATGCAAGTTGGGAAAGGGATAGAGATCGAGGGGGGGATTATGATCATGACAGATATCGTCAAAGAAGCAGAAATAATGACTGGTCTAGAGATCGTGATCGGTCTCGAGAACGTGAATTGGACAAGGAAAGAGTATATGAGCATTCACAAGATCGTGATCTACCCAAGGAAAAATTATTGGATAGGGATCCAGAGTTGGAAAAATTGTCAAAGGGTAATGAGAAGGAACACAACTTGAACCATGATCAGGATCGGGAAAAGGATCATGATGCAGATTGGATCGAAGGCCGAAGCGTTGATAACACTGATGATTATGATAAAAGCCTTGACAATGAAAGAGATCCACTGTCAAGGAGAGATAACGGGTGAGTCTGTCAGATTTATGTAATGTCATTTTACTATATATATTAGTCTAGGTTTGGTGGGTCATATACTAATTTGCGTCTGTGACAGAAAATAGAAAATTTCAGATTCCTGAAAATTAATTGAGTTGGAATGCTTGCTTAGTCATGAATCCTTTGTTGCTAGATGTTTAGTAATTTCGAACTGTGCAGTTCGTGATTCCGGAAATTTTTTAGAGACCTCTAAACTAAAGTACTTCATTCTTTCATTTGTGGTAATTTCCTTCCCCTTAATGCATTGGTTGAGTTTTATATTAAGGGCAATGGACAGGTGGGGAAGATGACGACTAGATAGTTCTACAGGCATGTTAAAAACAATGAATCTGCTGTTACAACTTTCATGGCGACGAATTAAATAGTATATTTTTTTAGTAGGATTATTCGAACTGGGGACCTCTTAATCATAAGCACACTTATGACAGTTGAGCTATGCGTTTGTTGGCTTCCACTCAATTCTTTGCTCATTTTGATGCTTATAAATTTTTAAATAGTGTTTAATTTTTATTTTCTCCAAATATGCATACCATTTCCCATTACTTTTTAGCTTTGTGGTATAATCGTTCATTGTGAAGAGGACAAATTGCATATGTTCTTCTTCTTGATGTATTTTGGAATCATTTTGTAGCATCCAGATTTTTCCTTGTGTACCCTTCTGTTTTGTAGAAAGGATGAAGAAAGAAGATTAACTTATTATTGGCTCTGATTAAATGATTGCTATTATGGCTTCTCTTTTCAGTCTTACAATTGATCCAGATCATCTTGCATTGTCTTCTGTCCTGTTTCATTGAAAGGATGGAGAAAGAGGAATAACTTTTTGGCCATGATTATATGATTGCTATTATGGCTTTTTCTTTCAGCCTTGCAATTGGAGATCGACCTGTTCGGGATGTTTCATCAGATTCTAGTGATGATTATATTCATGAAGTATGCTTACCATTTTTCACCTCTTAGATTTTCTGCGTTACAACTGATTATTAATAAGCATCTAATGCAAGGGCAACTTTTGCTCATATTGTTTTCACTGTAGTTAAAGGAACAACTGGAGATGTCAACTGAAAGAATTGAAGAACTTAGAAAAGAGGTCTGTTTTTACATATGGTTGACCAACGAGTGTGCTGATGATTCTTTTTTCACTAAAGAGAGAGATATGGTCATTTGGAAATGGTTGGCAAATATTTCAGAAAAATTTCAATGTTGATTGGCATAATTTTATACCCTCAGCCTGAAATGTGCAATTTGAAATGGTTGGCAAATATTTCAGAAAAATTCCAATGTTTATTGGCATAATTTTATACCCTCAGCCTGAAATGAGCATCTGAATATAATGGATATAGGTCCTACGAATATGCAACCTATGCTCGCAAAAAAACTTAGCCAACGTTTAAATTCAGCTTCAGTTGATATAAACATTTGAATCCAATTATAGTTTTGTGCAATATTGTGCAAGTTGTTTTGCATGATATTTTTAGATATCATGATTGCACTTGAATTCAGAGCCTTAGACGTATTCTCTTTCCAGATTTCTCAAATTGAGGAGAGGACAGGAGAGAAAGGAAAACACGTGATCGAGTTGCAAAAGAAAGCCAAGGTACAAGATAAATTTACAACTTTTATCTATGACACTTTTGTTGTGTTATCATTGCTTTGCTACCCTGTCCCTTGTGCTTCATGAAGCTGTGTTTGTATGGAGGGTTTTTTAGGGTTTGTTCAGGTCCTCAGGAGTTGGCCCAACCCCTCTTTTGGATGGAGTAGCTCCAAAAAGCCGACAAAAAAACCCTTGAAAACCTCTGTAGAACCTTCATAAACTCCCAAAAACCTTACAATACAATTAACACTTCTACTTTAACCGCTAATAACCTCTATATCCAAACGAGGGTTTCTGCCACAACCATTCGCAATTCAGAAGAATTTTTGTCTTCACTAAACCCCTCATAACTACTCAAAACCTCTCATAACAACTACCCCTCATTTTCAAAACTCTCTATCAAAACACATCTTAACTAATATGTATTTTATGCTAACTTACTAAAGTTGGATGCAGAAACTGGAAGATGCATTGATCAGCGCAAAGAAGCGCTCTTCATTACGTCAGATGCAGCTGACCAAGGTAACTGCCAGTATCATTTGTTACATTGTTTATAAACTTCAACGGCTATGATAATTCTGGTATTGGATGCAAATAACTGCAGCTCCATAAAAGCCATCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAACCAGTGAACAAGAACTTCAGGTTTGTGTTTCAACATATAAACACCTTAGGTTCTCTTCTCTCTCTCTACCTAAAAATTAAAAATAAAAAACTTCAGCAGAAAATTTGTAGTCGTGAACAATTTTCAGACGGTGCCTTATCGGAACGATTGTGCTATGTATCATTATTTTTTAGGAATCTTTCATATGATGAAGTACTTATGTTATGATCATAGTATGAGAAAGTTTAACTTTATATATATATAAGTTATCTGAGATTTGTCATACCATCATGGAGTGGTCTACTTAGTAATTAATTTTTTATGAGTTTCCTTAACATCTAAGTGAATCTTATTGTAAAATTCCCTTGCTATTGCCTTAACTTCGACTGTTTCTATATCCAATTACTCTTCTCTAAAGACGCTTGTAATTCATCCTTTTGACCTTGTACATGAATGAATAAAACACCATGGTGACCATTTCCTTACAGGCTTTGGTTGAATCAACTGCAATAGAGAGTGATGTTGGCTGATGATCTATGAAGTTCCAGCCAGTTGCAATTCATGTCATGAGCTGAAAAGGCTGCATCCTGATGTTGTGTTGGCGCGCAACTCTTCCCTGTGGTCATATGGTATATTCATGGTCTTCTGTTGATACTGATGGCAAGTTGTGAAGTAGAGATCATTTGTTACCATTTGCTTCATGGTACGTCCACAATCAACTTAAGCACATGATTTTACTCACTGTTGTCTAGTTAGGTATTTAGAGATTTACTGGAAATCAGTTACTTTTCCTACTTGCCTCAAGTTCCTTTTTCTTTTTTTACTGCCTAACCCTACTATTTAAGTAGTTCATTATCATGACTTAAACTCATTCCCTCGTGCGTTTTTTAAATCATTAGGCCAATCCATGATAATTATATTATAATTCTTTTCTAAGAATATTGACTGGTC

mRNA sequence

GTGTTTACTTTTTAGGGCATATTCCATTCCTTGCCTTCAGTCTCGATGTGTCGTTAGGTTTTGGCGTTACTTCCGACATGTCGATTTACGCTTCCTATAAATCAGCACTATCAATGGAAAAGAGAGTTCAATAGTGTTCTTGTGGAGTTTCTTCGTTCTCCTCCGAGCTCGGAGTTTCGCCGGAGATTATGACGATGGACGATGACAGCTCGATTTACGTCGGAGGACTTCCGTACGACGCCACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTGTTAATGATCGTAGTACTAGAGGAAAGTGTTATGGTTTCGTTACCTTTACAAACCCTCGATCTGCAATTGATGCCATTAATGATATGGATGGAAGGACTATAGAAGGGCGAGTTGTCAAAGTTAATGGAGTGAATACCAGAGGTGGGAGAAGGTTTGGTAGAGACAGTAATCGGTTCAATGGAGAGAGGGATGCAAGTTGGGAAAGGGATAGAGATCGAGGGGGGGATTATGATCATGACAGATATCGTCAAAGAAGCAGAAATAATGACTGGTCTAGAGATCGTGATCGGTCTCGAGAACGTGAATTGGACAAGGAAAGAGTATATGAGCATTCACAAGATCGTGATCTACCCAAGGAAAAATTATTGGATAGGGATCCAGAGTTGGAAAAATTGTCAAAGGGTAATGAGAAGGAACACAACTTGAACCATGATCAGGATCGGGAAAAGGATCATGATGCAGATTGGATCGAAGGCCGAAGCGTTGATAACACTGATGATTATGATAAAAGCCTTGACAATGAAAGAGATCCACTGTCAAGGAGAGATAACGGCCTTGCAATTGGAGATCGACCTGTTCGGGATGTTTCATCAGATTCTAGTGATGATTATATTCATGAATTAAAGGAACAACTGGAGATGTCAACTGAAAGAATTGAAGAACTTAGAAAAGAGATTTCTCAAATTGAGGAGAGGACAGGAGAGAAAGGAAAACACGTGATCGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGCGCAAAGAAGCGCTCTTCATTACGTCAGATGCAGCTGACCAAGCTCCATAAAAGCCATCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAACCAGTGAACAAGAACTTCAGGCTTTGGTTGAATCAACTGCAATAGAGAGTGATGTTGGCTGATGATCTATGAAGTTCCAGCCAGTTGCAATTCATGTCATGAGCTGAAAAGGCTGCATCCTGATGTTGTGTTGGCGCGCAACTCTTCCCTGTGGTCATATGGTATATTCATGGTCTTCTGTTGATACTGATGGCAAGTTGTGAAGTAGAGATCATTTGTTACCATTTGCTTCATGGTACGTCCACAATCAACTTAAGCACATGATTTTACTCACTGTTGTCTAGTTAGGTATTTAGAGATTTACTGGAAATCAGTTACTTTTCCTACTTGCCTCAAGTTCCTTTTTCTTTTTTTACTGCCTAACCCTACTATTTAAGTAGTTCATTATCATGACTTAAACTCATTCCCTCGTGCGTTTTTTAAATCATTAGGCCAATCCATGATAATTATATTATAATTCTTTTCTAAGAATATTGACTGGTC

Coding sequence (CDS)

ATGACGATGGACGATGACAGCTCGATTTACGTCGGAGGACTTCCGTACGACGCCACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTGTTAATGATCGTAGTACTAGAGGAAAGTGTTATGGTTTCGTTACCTTTACAAACCCTCGATCTGCAATTGATGCCATTAATGATATGGATGGAAGGACTATAGAAGGGCGAGTTGTCAAAGTTAATGGAGTGAATACCAGAGGTGGGAGAAGGTTTGGTAGAGACAGTAATCGGTTCAATGGAGAGAGGGATGCAAGTTGGGAAAGGGATAGAGATCGAGGGGGGGATTATGATCATGACAGATATCGTCAAAGAAGCAGAAATAATGACTGGTCTAGAGATCGTGATCGGTCTCGAGAACGTGAATTGGACAAGGAAAGAGTATATGAGCATTCACAAGATCGTGATCTACCCAAGGAAAAATTATTGGATAGGGATCCAGAGTTGGAAAAATTGTCAAAGGGTAATGAGAAGGAACACAACTTGAACCATGATCAGGATCGGGAAAAGGATCATGATGCAGATTGGATCGAAGGCCGAAGCGTTGATAACACTGATGATTATGATAAAAGCCTTGACAATGAAAGAGATCCACTGTCAAGGAGAGATAACGGCCTTGCAATTGGAGATCGACCTGTTCGGGATGTTTCATCAGATTCTAGTGATGATTATATTCATGAATTAAAGGAACAACTGGAGATGTCAACTGAAAGAATTGAAGAACTTAGAAAAGAGATTTCTCAAATTGAGGAGAGGACAGGAGAGAAAGGAAAACACGTGATCGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGCGCAAAGAAGCGCTCTTCATTACGTCAGATGCAGCTGACCAAGCTCCATAAAAGCCATCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAACCAGTGAACAAGAACTTCAGGCTTTGGTTGAATCAACTGCAATAGAGAGTGATGTTGGCTGA

Protein sequence

MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHNLNHDQDREKDHDADWIEGRSVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKRSSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG

Homology

[Close]

BLAST of Sed0007503 vs. NCBI nr
Match: XP_022946346.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita moschata] >KAG6599420.1 Cold-inducible RNA-binding protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030410.1 Cold-inducible RNA-binding protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 541.2 bits (1393), Expect = 6.5e-150
Identity = 293/346 (84.68%), Postives = 316/346 (91.33%), Query Frame = 0


Query: 1   MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDRGGDYDHDRY 120
           IDAI DMDGRTIEGRVV+VNGVNTRGG RFGR+SNRF+ ERD +WERDRDRG DY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN- 180
           R+R RNNDWSR+RDRSRE +LDKERVYEHSQDRDLPK+ LLDR+PELEK+ K NE+E + 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDREKDHDADWIEGRSVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDS 240
            L+H QD EKDHDADW  G  +DNTDDYDKSL ++RD LSRRDNGLAI  R  R++SSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLE+STER EELRKEISQIEERTGEKGK V+ELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG 345
           SS RQMQLTKLHKS LLVKDYSERLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Sed0007503 vs. NCBI nr
Match: XP_023547216.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo])

HSP 1 Score: 539.7 bits (1389), Expect = 1.9e-149
Identity = 292/346 (84.39%), Postives = 315/346 (91.04%), Query Frame = 0


Query: 1   MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDRGGDYDHDRY 120
           IDAI DMDGRTIEGRVV+VNGVNTRGG RFGR+SNRF+ ERD +WERDRDRG DY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN- 180
           R+R RNNDWSR+RDRSRE +LDKER YEHSQDRDLPK+ LLDR+PELEK+ K NE+E + 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDREKDHDADWIEGRSVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDS 240
            L+H QD EKDHDADW  G  +DNTDDYDKSL ++RD LSRRDNGLAI  R  R++SSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLE+STER EELRKEISQIEERTGEKGK V+ELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG 345
           SS RQMQLTKLHKS LLVKDYSERLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Sed0007503 vs. NCBI nr
Match: XP_022999196.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita maxima])

HSP 1 Score: 539.7 bits (1389), Expect = 1.9e-149
Identity = 292/346 (84.39%), Postives = 315/346 (91.04%), Query Frame = 0


Query: 1   MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDRGGDYDHDRY 120
           IDAI DMDGRTIEGRVV+VNGVNTRGG RFGR+SNRF+ ERD +WERDRDRG DY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN- 180
           R+R RNNDWSR+RDRSRE +LDKERVYEHSQDRDLPK+ LLDR+PELEK+ K NE+E + 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDREKDHDADWIEGRSVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDS 240
            L+H QD EKDHD DW  G  +DNTDDYDKSL ++RD LSRRDNGLAI  R  R++SSDS
Sbjct: 181 KLSHGQDWEKDHDGDWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLE+STER EELRKEISQIEERTGEKGK V+ELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG 345
           SS RQMQLTKLHKS LLVKDYSERLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Sed0007503 vs. NCBI nr
Match: XP_038889756.1 (serine/threonine-protein kinase prpf4B [Benincasa hispida])

HSP 1 Score: 534.3 bits (1375), Expect = 8.0e-148
Identity = 290/346 (83.82%), Postives = 310/346 (89.60%), Query Frame = 0


Query: 1   MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDRGGDYDHDRY 120
           IDAI DMDGR+IEGRVV+VNGV +R G RFGR+ NRF+ ERD SWERDRDRG DYDHDRY
Sbjct: 61  IDAIKDMDGRSIEGRVVRVNGVKSRSGGRFGREGNRFDVERDVSWERDRDRGRDYDHDRY 120

Query: 121 RQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN- 180
           R R RNNDWSRDRDRSRE +LDKER YEHSQD D PK+KLLDRDPELEK SK NEK H+ 
Sbjct: 121 RHRGRNNDWSRDRDRSREHDLDKERGYEHSQDHDPPKDKLLDRDPELEKSSKDNEKVHDL 180

Query: 181 -LNHDQDREKDHDADWIEGRSVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDS 240
            LNHDQD EK+H ADWI G  +DN DDY+KSLDN+R+ LSRRDNGL    R  RD+SSDS
Sbjct: 181 KLNHDQDSEKNHGADWIGGGGIDNADDYEKSLDNDRNQLSRRDNGLTSEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLE+STER+EELRKE+SQIEER+GEK K VIELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVIELQKKAKKLEDALISAKKR 300

Query: 301 SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG 345
           SS RQMQLTKLHKS LLVKDYSERLKTSEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Sed0007503 vs. NCBI nr
Match: XP_022143227.1 (U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia])

HSP 1 Score: 529.3 bits (1362), Expect = 2.6e-146
Identity = 287/344 (83.43%), Postives = 310/344 (90.12%), Query Frame = 0


Query: 1   MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDRGGDYDHDRY 120
           +DAI DMDGRTI+GRVV+VNGV +RGG RFGR+  R+N ERDA WE+DRDRG DYDHDRY
Sbjct: 61  VDAIKDMDGRTIDGRVVRVNGVKSRGGGRFGREGIRYN-ERDADWEKDRDRGRDYDHDRY 120

Query: 121 RQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHNL 180
             R RNNDWSR+RDRSRE +LDKER YEH QDRDLPK+KLLDRDPELEK SK NE   +L
Sbjct: 121 HHRGRNNDWSRERDRSREHDLDKERGYEHPQDRDLPKDKLLDRDPELEKTSKDNELVLDL 180

Query: 181 NHDQDREKDHDADWIEGRSVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSD 240
           N DQD EKDHDADW  GR++DNTDDYDKSLDN+RD  SRRD+GL I  R  R+VSSDSSD
Sbjct: 181 NRDQDWEKDHDADWSGGRNIDNTDDYDKSLDNDRDLPSRRDSGLTIEGRTGREVSSDSSD 240

Query: 241 DYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKRSS 300
           DYIHELKEQLE+STER EELRKEIS+IEERTGEKGK V+ELQKKAKKLEDALISAKKR+S
Sbjct: 241 DYIHELKEQLEISTERFEELRKEISRIEERTGEKGKLVVELQKKAKKLEDALISAKKRTS 300

Query: 301 LRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG 345
            RQMQLTKLHKS LLVKDYSERLK+SEQELQALVESTAIESDVG
Sbjct: 301 FRQMQLTKLHKSFLLVKDYSERLKSSEQELQALVESTAIESDVG 343

[Close]

BLAST of Sed0007503 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-12
Identity = 53/138 (38.41%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 5   DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDR-STRGKCYGFVTFTNPRSAIDA 64
           D+  ++VGGL ++ TE+SL ++F  YG V  V +V DR S R + +GFVTF NP  A DA
Sbjct: 4   DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63

Query: 65  INDMDGRTIEGRVVKVNGV-----NTRGGRRFGRDSNR--FNGERDASWERDRDRGGDYD 124
           +  M+G++++GR ++V+       + RGG R G    R  F G R      DR  GG   
Sbjct: 64  MMAMNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGRGFFRGGRGRGGGGDRGYGGS-- 123

Query: 125 HDRYRQRSRNNDWSRDRD 135
             R+  RS     S  RD
Sbjct: 124 -SRFENRSGGYQSSGSRD 138

[Close]

BLAST of Sed0007503 vs. ExPASy Swiss-Prot
Match: Q66II8 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-12
Identity = 73/232 (31.47%), Postives = 112/232 (48.28%), Query Frame = 0


Query: 4   DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIV-NDRSTRGKCYGFVTFTNPRSAID 63
           D   +++V  + YD TE  LRR F++YG +  + +V N RS + + Y F+ + + R    
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHS 159

Query: 64  AINDMDGRTIEGRVVKVN---------------GVNTRGGRRFGRDSN-RFNGERDASWE 123
           A    DG+ I+GR V V+               G    G RR G D N R +G  D S  
Sbjct: 160 AYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRY 219

Query: 124 RDRDRGGDYDHDRYRQRSRNNDWSRDRDRSR--------------ERELDKERVYEHSQD 183
            +RDR  + + DR R+RSR  D  R+R RSR              ER+  +ER  +  +D
Sbjct: 220 DERDRDRERERDR-RERSRERDKERERRRSRSRERRRRSRSREKEERKRSRERSRDKDKD 279

Query: 184 RDLPKEKLLDRDPELEKLSKGNEKEHNLNHDQDREKDHDADWIEGRSVDNTD 205
           +D  K+K  D+D + ++  +   +E     D+DREK  D   +EG   ++ D
Sbjct: 280 KDKDKDKEKDKDKDRDRKRRSRSRERKRERDRDREKKEDR--VEGEVPESVD 328

[Close]

BLAST of Sed0007503 vs. ExPASy Swiss-Prot
Match: Q18409 (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=6239 GN=rsp-6 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-12
Identity = 65/170 (38.24%), Postives = 83/170 (48.82%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAIN 65
           D+ +YVGGLP DAT   L  IFD +G +  V +    + R   + FV + + R A DA+ 
Sbjct: 2   DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWV----ARRPPGFAFVEYDDVRDAEDAVR 61

Query: 66  DMDGRTIEG---RVVKVNGVNTRGGRR---------FGRDSNRFNGERDASWERDRDRGG 125
            +DG  I G   RV    G    GG R          GRD + + G+R  S  R RDRG 
Sbjct: 62  ALDGSRICGVRARVELSTGQRRGGGGRGGGFGGRGGGGRDRSPYRGDRGRSRSRSRDRGR 121

Query: 126 DYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDR 164
           D   DR R RSR+    R R+RSRERE  + R     Q+RD    K   R
Sbjct: 122 DRSRDRSRDRSRDRSRDRSRERSRERERTRSR-SRSPQERDRSHSKSRSR 166

[Close]

BLAST of Sed0007503 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.0e-12
Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = 0


Query: 3   MDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAI 62
           M D+  +++GGL +D  E+SL ++F  YG +  V +V DR T R + +GFVTF NP  A 
Sbjct: 1   MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60

Query: 63  DAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDRGG---DYDHD 122
           DA+  M+G+ ++GR ++V+      G R G      +G R   +   R RGG    Y   
Sbjct: 61  DAMMAMNGKAVDGRQIRVDQAGKSSGDRRGGYRGGSSGGR-GFFRGGRGRGGGDRGYGSS 120

Query: 123 RYRQRS 125
           R+  RS
Sbjct: 121 RFDNRS 125

[Close]

BLAST of Sed0007503 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-11
Identity = 64/179 (35.75%), Postives = 87/179 (48.60%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  NDMDGRTIEGRVVKVNGVNTRGG---------------RRFGRDSNRFNGERDASWERDR 125
             M GR +  +V+ VN    + G               R  G +   F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGGDYDHDRYR----QRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRD 165
              GD D +R+R     RSR  D    RDR  +R+L++ER  E   DR +   +  DRD
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYMDGRR--DRD 186

[Close]

BLAST of Sed0007503 vs. ExPASy TrEMBL
Match: A0A6J1G3E0 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC111450445 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 3.2e-150
Identity = 293/346 (84.68%), Postives = 316/346 (91.33%), Query Frame = 0


Query: 1   MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDRGGDYDHDRY 120
           IDAI DMDGRTIEGRVV+VNGVNTRGG RFGR+SNRF+ ERD +WERDRDRG DY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN- 180
           R+R RNNDWSR+RDRSRE +LDKERVYEHSQDRDLPK+ LLDR+PELEK+ K NE+E + 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDREKDHDADWIEGRSVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDS 240
            L+H QD EKDHDADW  G  +DNTDDYDKSL ++RD LSRRDNGLAI  R  R++SSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLE+STER EELRKEISQIEERTGEKGK V+ELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG 345
           SS RQMQLTKLHKS LLVKDYSERLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Sed0007503 vs. ExPASy TrEMBL
Match: A0A6J1KCE4 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita maxima OX=3661 GN=LOC111493652 PE=4 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 9.2e-150
Identity = 292/346 (84.39%), Postives = 315/346 (91.04%), Query Frame = 0


Query: 1   MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDRGGDYDHDRY 120
           IDAI DMDGRTIEGRVV+VNGVNTRGG RFGR+SNRF+ ERD +WERDRDRG DY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN- 180
           R+R RNNDWSR+RDRSRE +LDKERVYEHSQDRDLPK+ LLDR+PELEK+ K NE+E + 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDREKDHDADWIEGRSVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDS 240
            L+H QD EKDHD DW  G  +DNTDDYDKSL ++RD LSRRDNGLAI  R  R++SSDS
Sbjct: 181 KLSHGQDWEKDHDGDWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLE+STER EELRKEISQIEERTGEKGK V+ELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG 345
           SS RQMQLTKLHKS LLVKDYSERLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Sed0007503 vs. ExPASy TrEMBL
Match: A0A6J1CQ67 (U1 small nuclear ribonucleoprotein 70 kDa OS=Momordica charantia OX=3673 GN=LOC111013144 PE=4 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 1.2e-146
Identity = 287/344 (83.43%), Postives = 310/344 (90.12%), Query Frame = 0


Query: 1   MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDRGGDYDHDRY 120
           +DAI DMDGRTI+GRVV+VNGV +RGG RFGR+  R+N ERDA WE+DRDRG DYDHDRY
Sbjct: 61  VDAIKDMDGRTIDGRVVRVNGVKSRGGGRFGREGIRYN-ERDADWEKDRDRGRDYDHDRY 120

Query: 121 RQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHNL 180
             R RNNDWSR+RDRSRE +LDKER YEH QDRDLPK+KLLDRDPELEK SK NE   +L
Sbjct: 121 HHRGRNNDWSRERDRSREHDLDKERGYEHPQDRDLPKDKLLDRDPELEKTSKDNELVLDL 180

Query: 181 NHDQDREKDHDADWIEGRSVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSD 240
           N DQD EKDHDADW  GR++DNTDDYDKSLDN+RD  SRRD+GL I  R  R+VSSDSSD
Sbjct: 181 NRDQDWEKDHDADWSGGRNIDNTDDYDKSLDNDRDLPSRRDSGLTIEGRTGREVSSDSSD 240

Query: 241 DYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKRSS 300
           DYIHELKEQLE+STER EELRKEIS+IEERTGEKGK V+ELQKKAKKLEDALISAKKR+S
Sbjct: 241 DYIHELKEQLEISTERFEELRKEISRIEERTGEKGKLVVELQKKAKKLEDALISAKKRTS 300

Query: 301 LRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG 345
            RQMQLTKLHKS LLVKDYSERLK+SEQELQALVESTAIESDVG
Sbjct: 301 FRQMQLTKLHKSFLLVKDYSERLKSSEQELQALVESTAIESDVG 343

[Close]

BLAST of Sed0007503 vs. ExPASy TrEMBL
Match: A0A5D3CHM1 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00030 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 5.8e-144
Identity = 283/346 (81.79%), Postives = 306/346 (88.44%), Query Frame = 0


Query: 1   MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDRGGDYDHDRY 120
           IDAI DMDGRTIEGRVV+VNGV +R G RFG++ NRF+ ERD +WERDRDRG DYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN- 180
           R R RNNDWSRD DRSRE +LDKER Y+HSQDRDLPK++ LDRDPELEK SK NEK H+ 
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 -LNHDQDREKDHDADWIEGRSVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDS 240
            LNHDQD EKDH AD   G  +D TDDYDKSLDN+RD + RRDNGL I  R  RD+SSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLE+STER+EELRKE+SQIEER+GEK K V+ELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG 345
           SS RQ QL KLHKS LLVKDYS+RLKTSEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Sed0007503 vs. ExPASy TrEMBL
Match: A0A5A7V7D5 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001420 PE=4 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 6.4e-143
Identity = 281/346 (81.21%), Postives = 305/346 (88.15%), Query Frame = 0


Query: 1   MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDRGGDYDHDRY 120
           IDAI DMDGRTIEGRVV+VNGV +R G RFG++ NRF+ ERD +WERDRDRG DYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN- 180
           R R RNNDWSRD DRSRE +LDKER Y+HSQDRDLPK++ LDRDPELEK SK NEK H+ 
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 -LNHDQDREKDHDADWIEGRSVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDS 240
            LNHDQD EKDH AD   G  +D TDDYDKSLDN+RD + RRDN L I  R  RD+SSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLE+STER+EELRKE+SQIEER+GEK K V+ELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG 345
           SS RQ QL KLHKS LLVKDYS+RLKTSEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Sed0007503 vs. TAIR 10
Match: AT5G19960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 215.7 bits (548), Expect = 5.8e-56
Identity = 156/349 (44.70%), Postives = 214/349 (61.32%), Query Frame = 0


Query: 1   MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSA 60
           MTMDD +S+YVGGLPYD TE+++RR+F +YG+V+ VKIVNDRS RGKCYGFVTF+N RSA
Sbjct: 1   MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60

Query: 61  IDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRDR--GGDYDHD 120
            DAI DMDG++I GR V+VN V TRGGR    +      +    W+R  DR   G+Y+ D
Sbjct: 61  DDAIEDMDGKSIGGRAVRVNDVTTRGGR---MNPGPGRLQPHGGWDRSPDRRSDGNYERD 120

Query: 121 RYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKE-KLLDRDPELEKLSKGNEKE 180
           RY  RSR  D S+DR R   R ++KER YEHS D +   +  ++DR+   E++  G+E +
Sbjct: 121 RYSDRSRERDRSQDR-RKDHRYIEKERAYEHSHDFERRNDHDMVDRNGYKERVFDGDEGD 180

Query: 181 HNLNHDQDREKDHDADWIE-GRSVDNTDDYD-KSLDNERDPLSRRDNGLAIGDRPVRDVS 240
                        D  +++ GR ++ T  ++ +S + +R+  +  D G        RD  
Sbjct: 181 WR----------GDRSYVDNGRGINGTSAHEGRSQETKREDSTILDGGRG------RDHF 240

Query: 241 SDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISA 300
           S+SS D  H++KE LE   +  E LR E+  +EER   K     ELQKK+K+LED LI+ 
Sbjct: 241 SNSSGD--HQVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLINE 300

Query: 301 KKRSSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG 345
           KK  S R+ +L KLHKS+  V++ ++ LK  EQELQ LV S A E   G
Sbjct: 301 KKLVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLVNSAAREGVAG 327

[Close]

BLAST of Sed0007503 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 79.3 bits (194), Expect = 6.5e-15
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 7   SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAIN 66
           S +++GG+ Y   EDSLR  F  YG VV  +++ DR T R + +GFVTFT+  +A  AI 
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 67  DMDGRTIEGRVVKVNGVNTR------GGRRFGRDSNRFNG 100
            +DGR + GRVVKVN  N R      GG  +G     + G
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFGGGGYGGGGGGYGG 139

[Close]

BLAST of Sed0007503 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-12
Identity = 64/179 (35.75%), Postives = 87/179 (48.60%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  NDMDGRTIEGRVVKVNGVNTRGG---------------RRFGRDSNRFNGERDASWERDR 125
             M GR +  +V+ VN    + G               R  G +   F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGGDYDHDRYR----QRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRD 165
              GD D +R+R     RSR  D    RDR  +R+L++ER  E   DR +   +  DRD
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYMDGRR--DRD 186

[Close]

BLAST of Sed0007503 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-12
Identity = 64/179 (35.75%), Postives = 87/179 (48.60%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  NDMDGRTIEGRVVKVNGVNTRGG---------------RRFGRDSNRFNGERDASWERDR 125
             M GR +  +V+ VN    + G               R  G +   F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGGDYDHDRYR----QRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRD 165
              GD D +R+R     RSR  D    RDR  +R+L++ER  E   DR +   +  DRD
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYMDGRR--DRD 186

The following BLAST results are available for this feature:

BLAST of Sed0007503 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946346.1	6.5e-150	84.68	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita moschata] >KAG6599420.1 Col...	[more]
XP_023547216.1	1.9e-149	84.39	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]	[more]
XP_022999196.1	1.9e-149	84.39	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita maxima]	[more]
XP_038889756.1	8.0e-148	83.82	serine/threonine-protein kinase prpf4B [Benincasa hispida]	[more]
XP_022143227.1	2.6e-146	83.43	U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia]	[more]

BLAST of Sed0007503 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q28IQ9	1.0e-12	38.41	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
Q66II8	1.0e-12	31.47	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp...	[more]
Q18409	1.7e-12	38.24	Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=62...	[more]
Q9DED4	5.0e-12	36.51	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]
O22703	1.5e-11	35.75	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]

BLAST of Sed0007503 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3E0	3.2e-150	84.68	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1KCE4	9.2e-150	84.39	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1CQ67	1.2e-146	83.43	U1 small nuclear ribonucleoprotein 70 kDa OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A5D3CHM1	5.8e-144	81.79	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7V7D5	6.4e-143	81.21	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Sed0007503 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19960.1	5.8e-56	44.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	6.5e-15	43.00	glycine-rich RNA-binding protein 3	[more]
AT1G60650.1	1.0e-12	35.75	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	1.0e-12	35.75	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 243..270
None	No IPR available	COILS	Coil	Coil	coord: 278..298
None	No IPR available	COILS	Coil	Coil	coord: 316..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..239
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..342
None	No IPR available	PANTHER	PTHR23147:SF172	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..342
None	No IPR available	CDD	cd00590	RRM_SF	coord: 9..80 e-value: 7.3482E-23 score: 88.5161
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..80 e-value: 2.8E-23 score: 93.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 4.0E-21 score: 74.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..84 score: 19.17783
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..152 e-value: 3.4E-24 score: 87.5
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007503.1	Sed0007503.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding