Sed0007398 (gene) Chayote v1

Overview


Name	Sed0007398
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ATP-dependent Clp protease adapter protein clpS
Location	LG01: 12438010 .. 12440488 (+)
RNA-Seq Expression	Sed0007398
Synteny	Sed0007398

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGCGAGCGCGCGCACAGAGAGAGAGAGGGGCCATGGAAGCTGCAATTTGTTCGACCATTTCTTTCGCCCAATCATTTCTTCAATCCCACCAAATCAGGTATTCCATCTTTCTTCGAATTTTCATTCTTCGCTTATCAATTTCTCTGTATTTCTTTCTTCCCTAGTTTCTATGTCCTCACAATCCAATATAATTAATCACATTTTCTGTATTTCTCTGTATTTCTGCCTTAATTGCGTATCATGTGCACGTGGATTGATAATTTTCCGGTTTTATACGATATTCACATTTTAATTTTTAATGGCGTAGCATTAAGATAGAGACAGAAGATGTATGATTCAGGTTTTGTAGATTTAACGGTATATCCCTCTTACGATGTTTGGATTTTTGTTTTTGAAATTTAAGCTCATTTTTACCCAATCTTTCTCGCAATATATTTCATCTTTCCTACGATATATTTGTCTTTCCTTGAGAATGAATGTGAATACTAGCCATATTTAAAATAAAATAAAATTTAGAAGCTACTTTTTTTTTTGTTCCAAATTTGGTTTGGTCTTTAAAAATATAGTTAATATGTAGATATGTAAGAAAAAAATATGGTAAAGTAGTTGTTTGTTATAGGCTTAAATTTCAAAAACAGAAAATAAAATAGTTATCGAATGGAGCCTTAACTACGGAAATTGTAGCTTAATCTTCTGCTTCACTTTGTTTTGTTTTTATCCATATTATTGCAGTCTTGAGTTGAGACATATATAGTTTCTGGACTTTACTAGAACTGCTGCTTAACAAATAGTTTGCATTAGAAACAGAGAGTACAATTTTAAAGATGTGGCATAGTGGGCCTTTAGTGCGTATTAGTGAAGTATCTTTGGAGTTCTTTGAAAAAGTGGGTTATTTTCTGTTAAGAGGTTGTAGATTATCCATGAATGTACTTTAAGTTTATATTATGTTTGATTGTTTATTTTATAATCCAAGTCACTTTATGCGTACTTTAACTGATTTCGGAAAAGAACCCTGCAATTCAATGTTGTCAATAAAACTCGTAAAAAATTAATTCTTAGGTATATGGGCACCATCAATTAAACTAATTTACTTTGTGATTCTCAAGGCTTCATGACCACTAAATCGACTCATATTGGTTTTTATTTGTTGTTTATTTATAGTCTATTGATGACTTGGTATTGATATTGATTGATTGATAATATGTTCTTATGCTAATGAAACCTTGCATCTAAGACCTATGAAATTATGGACAAAACACTCGTGTGAGATTGAAATGTTGAGTTTGGTGGGTACTCGGAACAACTGTTATATGAACTCTTCGAAAGAAAGACTAGCTTGTCAAACTATTTGGCGAATCATCCAAATGGATTTCTCCATACAACCAGGAATTTATCTGAAGAAGTAAAATTGCAAGGATTTTGAGATCCTCTTTATATATACTATTTCAAGAAACCCTTACATTTCTAGTTTAACTAAAATATTAATCTATTTTAAACGTTCATATTCTTAGGTTAATGGCCAATCTTGGATAACAAACTGCCGGCGATTGATAAGTTTTGCACGGTGTCTGTAAGCTGAGATTGTTAGAGCCTAGGCCGCATTTAACTCAGAATTTTTTGCATGCAAGGGGTGGAAAAAAAATTAATACTTTCAAGCGTGTGGAGGCTGTTTATTTTATTTTTCATTGGAACTTGCATGACATGTTTATTCAGCATTACCCATTTATAATTGCTATTTGTGTCATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAATGATGCTATCAATATCTGAGCTCGGAAAAGGTGGAGGGTTGGTAGAAAAGCCAACCATAGAGAAGACAACACCTGGCCGCGAATCTGAGTTTGATGTCAGGTGTAAAACAAATTCTCCTCTGAATTGTCTGACAAATACGAGCAACTAAAGAACTGTATGAAATTTTGATAGAACCTAAGATCGGTATGAATTTGATAATTCCTTATCCTACTCCTAAACGGGCCTTATCAGAATTAGAAAGGGTTTAGCTTCCAAAATAATTTTGATCTTCAGGAAATCAAGGAAAACTGCACCACCTTACCGAGTGATGCTGCATAATGATAATTACAATAAGCGGGAATATGTTGTGCAAGTTCTGATGAAGGTTATCCCTGGAATGACCGTTGATAATGCAGTCAACATAATGCAGGAGGCACATTATAATGGGATGTCAGTGGTAATTATCTGTGCCCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGTAATGGTCTTCTAAGTTCAATTGAGCCTGCAAGTGATGGTTGTTGAATAGGAAAAATATACTATGCCATGTACTCTTTTGCCCCTTAGTTATCAGCCATATTAAAAGTGCATGTTCTCCACTGCTTATGTATTGTAAGTTGCATCTATGTACATAAATAGAGATACTTCTTAAATAAAGAAACTTCATTTTAC

mRNA sequence

GCGCGAGCGCGCGCACAGAGAGAGAGAGGGGCCATGGAAGCTGCAATTTGTTCGACCATTTCTTTCGCCCAATCATTTCTTCAATCCCACCAAATCAGGAAATCAAGGAAAACTGCACCACCTTACCGAGTGATGCTGCATAATGATAATTACAATAAGCGGGAATATGTTGTGCAAGTTCTGATGAAGGTTATCCCTGGAATGACCGTTGATAATGCAGTCAACATAATGCAGGAGGCACATTATAATGGGATGTCAGTGGTAATTATCTGTGCCCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGTAATGGTCTTCTAAGTTCAATTGAGCCTGCAAGTGATGGTTGTTGAATAGGAAAAATATACTATGCCATGTACTCTTTTGCCCCTTAGTTATCAGCCATATTAAAAGTGCATGTTCTCCACTGCTTATGTATTGTAAGTTGCATCTATGTACATAAATAGAGATACTTCTTAAATAAAGAAACTTCATTTTAC

Coding sequence (CDS)

ATGGAAGCTGCAATTTGTTCGACCATTTCTTTCGCCCAATCATTTCTTCAATCCCACCAAATCAGGAAATCAAGGAAAACTGCACCACCTTACCGAGTGATGCTGCATAATGATAATTACAATAAGCGGGAATATGTTGTGCAAGTTCTGATGAAGGTTATCCCTGGAATGACCGTTGATAATGCAGTCAACATAATGCAGGAGGCACATTATAATGGGATGTCAGTGGTAATTATCTGTGCCCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGTAATGGTCTTCTAAGTTCAATTGAGCCTGCAAGTGATGGTTGTTGA

Protein sequence

MEAAICSTISFAQSFLQSHQIRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

Homology

[Close]

BLAST of Sed0007398 vs. NCBI nr
Match: XP_022136972.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 2.7e-41
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKSRKTAPPYRV+LHNDNYNKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMSVVIIC
Sbjct: 98  VRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIIC 157

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
           AQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 158 AQVDAEDHCMQLRGNGLLSSIEPASDGC 185

[Close]

BLAST of Sed0007398 vs. NCBI nr
Match: XP_022136971.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 2.7e-41
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKSRKTAPPYRV+LHNDNYNKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMSVVIIC
Sbjct: 71  VRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIIC 130

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
           AQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 131 AQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0007398 vs. NCBI nr
Match: XP_008456997.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 174.9 bits (442), Expect = 3.8e-40
Identity = 82/88 (93.18%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKSRKT+PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIIC
Sbjct: 71  VRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC 130

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
           AQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 131 AQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0007398 vs. NCBI nr
Match: XP_004137466.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus] >KGN64109.1 hypothetical protein Csa_014084 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 3.8e-40
Identity = 82/88 (93.18%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKSRKT+PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIIC
Sbjct: 71  VRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC 130

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
           AQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 131 AQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0007398 vs. NCBI nr
Match: TYJ98982.1 (ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 3.8e-40
Identity = 82/88 (93.18%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKSRKT+PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIIC
Sbjct: 33  VRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC 92

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
           AQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 93  AQVDAEDHCMQLRGNGLLSSIEPASDGC 120

[Close]

BLAST of Sed0007398 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.3e-38
Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQEAH NG++VVI+C
Sbjct: 72  LRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVC 131

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
           AQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 132 AQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Sed0007398 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-21
Identity = 50/88 (56.82%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           + +S+K  P Y+V+LHNDNYNKREYVV+VL+KV+  +TVD+AV  MQEAH  G+++V+ C
Sbjct: 77  VERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITVDDAVTCMQEAHETGVALVVAC 136

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
            Q +AE +C  LR NGL S+IEP   GC
Sbjct: 137 PQDNAERYCEGLRLNGLTSTIEPG--GC 162

[Close]

BLAST of Sed0007398 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-18
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 16  LQSHQIRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMS 75
           +Q  +    RK AP YRV+LHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  
Sbjct: 6   IQKPETTTKRKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTG 65

Query: 76  VVIICAQVDAEDHCMQLRGNGLLSSIEP 104
           +VI C    AE +C QL+ +GL SSIEP
Sbjct: 66  LVITCDIEPAEFYCEQLKSHGLSSSIEP 93

[Close]

BLAST of Sed0007398 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-15
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 16 LQSHQIRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMS 75
          +Q  +    RK AP YRV+LHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  
Sbjct: 6  IQKPETTTKRKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTG 65

Query: 76 VVIICAQVDAEDHCMQLRGNGL 98
          +VI C    AE +C QL+ +GL
Sbjct: 66 LVITCDIEPAEFYCEQLKSHGL 87

[Close]

BLAST of Sed0007398 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 25  RKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVD 84
           RK +P Y+V+LHND  N  EYV+  L +V+P ++  +A+ +M EAH  G+ +VI+C    
Sbjct: 24  RKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDIEP 83

Query: 85  AEDHCMQLRGNGLLSSIEP 104
           AE +C  L+  GL SSIEP
Sbjct: 84  AEFYCETLKSKGLTSSIEP 102

[Close]

BLAST of Sed0007398 vs. ExPASy TrEMBL
Match: A0A6J1C6X4 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKSRKTAPPYRV+LHNDNYNKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMSVVIIC
Sbjct: 98  VRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIIC 157

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
           AQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 158 AQVDAEDHCMQLRGNGLLSSIEPASDGC 185

[Close]

BLAST of Sed0007398 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKSRKTAPPYRV+LHNDNYNKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMSVVIIC
Sbjct: 71  VRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIIC 130

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
           AQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 131 AQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0007398 vs. ExPASy TrEMBL
Match: A0A5D3BGU1 (ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001850 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40
Identity = 82/88 (93.18%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKSRKT+PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIIC
Sbjct: 33  VRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC 92

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
           AQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 93  AQVDAEDHCMQLRGNGLLSSIEPASDGC 120

[Close]

BLAST of Sed0007398 vs. ExPASy TrEMBL
Match: A0A0A0LSY6 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40
Identity = 82/88 (93.18%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKSRKT+PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIIC
Sbjct: 71  VRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC 130

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
           AQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 131 AQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0007398 vs. ExPASy TrEMBL
Match: A0A1S3C561 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496767 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40
Identity = 82/88 (93.18%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKSRKT+PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIIC
Sbjct: 71  VRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIIC 130

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
           AQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 131 AQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0007398 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 157.5 bits (397), Expect = 5.9e-39
Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQEAH NG++VVI+C
Sbjct: 72  LRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVC 131

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
           AQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 132 AQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Sed0007398 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-18
Identity = 47/88 (53.41%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 21  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIIC 80
           +RKS+K APPYRV+LHNDN+NKREYVVQVLMK                            
Sbjct: 72  LRKSKKIAPPYRVILHNDNFNKREYVVQVLMK---------------------------- 129

Query: 81  AQVDAEDHCMQLRGNGLLSSIEPASDGC 109
              DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 132 --ADAEQHCMQLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of Sed0007398 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136972.1	2.7e-41	96.59	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]
XP_022136971.1	2.7e-41	96.59	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
XP_008456997.1	3.8e-40	93.18	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_004137466.1	3.8e-40	93.18	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]
TYJ98982.1	3.8e-40	93.18	ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0007398 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	8.3e-38	82.95	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	3.2e-21	56.82	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	2.5e-18	52.27	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.2e-15	50.00	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	3.2e-13	45.57	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of Sed0007398 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6X4	1.3e-41	96.59	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]
A0A6J1C511	1.3e-41	96.59	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A5D3BGU1	1.9e-40	93.18	ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0LSY6	1.9e-40	93.18	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 S...	[more]
A0A1S3C561	1.9e-40	93.18	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis ...	[more]

BLAST of Sed0007398 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	5.9e-39	82.95	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	2.6e-18	53.41	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 27..94 e-value: 7.3E-19 score: 67.3
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 25..103 e-value: 2.1E-21 score: 77.6
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 25..103
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 19..108
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 19..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007398.1	Sed0007398.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity