Sed0007175 (gene) Chayote v1

Overview


Name	Sed0007175
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA repair protein XRCC3 homolog
Location	LG11: 5639683 .. 5640753 (-)
RNA-Seq Expression	Sed0007175
Synteny	Sed0007175

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACACACCATTTTGAAATGGAGGGAACCCCAAAATTCAAACAAAACCCAACAAAGTTAAGCGGTCGTTCTTCCCCACTCGCCATTTACAGAATCTGAAATGTCGCCGGAAAATCTCCTCCAACTCCTCGAAACCACCCAAAAGTGCACATTCGGATGTCCGATCATCGACGCCGCCGTCGGCGGCGGCGTATCCTGCAAGTCCCTGACCGAGATCGTCTCCGAAAGCGGGTGCGGCAAAACCCAACTCTGCCTTCAACTCTCCCTCTGCGCTCAGCTCCCCCTCTCCCATGGCGGCCTCAACGCCTCCTCTCTCTATCTATACACCGAGTTCCCTTTCCCCTTTCGCCGCCTTCACCAACTCTCCCAATCATTCCCACAAATCCCCAATCCCTGCGATCACGTTTTTCTTCACCCAATTCACTCTGCCCGCCAACTGTTCGACCTAATGCCCAAGATCGAATCCTTCCTTGCAAATCAAAATTCCCGACTCCCCACGAGGCTCATTGTTGTTGATTCGATTGCCGCCGTGTTTCGGTCTGATTTCGACAACACCCCGTCTGATCTCAAGCGGAGATCCGCTCTTTTCTTCGAGATTTCTGGGAAGTTGAAGTTGCTGGCGAAGAGGTATTCTTTGGCTGTGGTGCTGACGAATCAGGTGGTGGATGTGATGGATTCCAATGCGAATGCGTTGAGGATTGGGAATTTGAAGTCGCTATGTTCTTCGGGTCGACGGGTCTGCCCGGCACTCGGGCTCGCGTGGGCGAATTGCGTTAATTCGAGATTGTTTTTGTCGAGAGATGAGGAAGTTGTTGGGGAAGGAGATGGGATGAGGAAGGGTGGTGAGTTGGTAGTACAAAGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCACATTTGCCTAAATCATCTTGTGAGTTTCTAATCAATAGAGGAGGAGTTGTGGGAGTTGAAAACCTAAACCAATGACCTTTTTTTCTTATGAACCTGTGTTTTTTGGGTTGGAAAGTTATAAAGTTTGTATAATCTATGTTTTGATTTTGTAAAGTGGTTGAATTATAGAATTTTG

mRNA sequence

CACACACCATTTTGAAATGGAGGGAACCCCAAAATTCAAACAAAACCCAACAAAGTTAAGCGGTCGTTCTTCCCCACTCGCCATTTACAGAATCTGAAATGTCGCCGGAAAATCTCCTCCAACTCCTCGAAACCACCCAAAAGTGCACATTCGGATGTCCGATCATCGACGCCGCCGTCGGCGGCGGCGTATCCTGCAAGTCCCTGACCGAGATCGTCTCCGAAAGCGGGTGCGGCAAAACCCAACTCTGCCTTCAACTCTCCCTCTGCGCTCAGCTCCCCCTCTCCCATGGCGGCCTCAACGCCTCCTCTCTCTATCTATACACCGAGTTCCCTTTCCCCTTTCGCCGCCTTCACCAACTCTCCCAATCATTCCCACAAATCCCCAATCCCTGCGATCACGTTTTTCTTCACCCAATTCACTCTGCCCGCCAACTGTTCGACCTAATGCCCAAGATCGAATCCTTCCTTGCAAATCAAAATTCCCGACTCCCCACGAGGCTCATTGTTGTTGATTCGATTGCCGCCGTGTTTCGGTCTGATTTCGACAACACCCCGTCTGATCTCAAGCGGAGATCCGCTCTTTTCTTCGAGATTTCTGGGAAGTTGAAGTTGCTGGCGAAGAGGTATTCTTTGGCTGTGGTGCTGACGAATCAGGTGGTGGATGTGATGGATTCCAATGCGAATGCGTTGAGGATTGGGAATTTGAAGTCGCTATGTTCTTCGGGTCGACGGGTCTGCCCGGCACTCGGGCTCGCGTGGGCGAATTGCGTTAATTCGAGATTGTTTTTGTCGAGAGATGAGGAAGTTGTTGGGGAAGGAGATGGGATGAGGAAGGGTGGTGAGTTGGTAGTACAAAGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCACATTTGCCTAAATCATCTTGTGAGTTTCTAATCAATAGAGGAGGAGTTGTGGGAGTTGAAAACCTAAACCAATGACCTTTTTTTCTTATGAACCTGTGTTTTTTGGGTTGGAAAGTTATAAAGTTTGTATAATCTATGTTTTGATTTTGTAAAGTGGTTGAATTATAGAATTTTG

Coding sequence (CDS)

ATGTCGCCGGAAAATCTCCTCCAACTCCTCGAAACCACCCAAAAGTGCACATTCGGATGTCCGATCATCGACGCCGCCGTCGGCGGCGGCGTATCCTGCAAGTCCCTGACCGAGATCGTCTCCGAAAGCGGGTGCGGCAAAACCCAACTCTGCCTTCAACTCTCCCTCTGCGCTCAGCTCCCCCTCTCCCATGGCGGCCTCAACGCCTCCTCTCTCTATCTATACACCGAGTTCCCTTTCCCCTTTCGCCGCCTTCACCAACTCTCCCAATCATTCCCACAAATCCCCAATCCCTGCGATCACGTTTTTCTTCACCCAATTCACTCTGCCCGCCAACTGTTCGACCTAATGCCCAAGATCGAATCCTTCCTTGCAAATCAAAATTCCCGACTCCCCACGAGGCTCATTGTTGTTGATTCGATTGCCGCCGTGTTTCGGTCTGATTTCGACAACACCCCGTCTGATCTCAAGCGGAGATCCGCTCTTTTCTTCGAGATTTCTGGGAAGTTGAAGTTGCTGGCGAAGAGGTATTCTTTGGCTGTGGTGCTGACGAATCAGGTGGTGGATGTGATGGATTCCAATGCGAATGCGTTGAGGATTGGGAATTTGAAGTCGCTATGTTCTTCGGGTCGACGGGTCTGCCCGGCACTCGGGCTCGCGTGGGCGAATTGCGTTAATTCGAGATTGTTTTTGTCGAGAGATGAGGAAGTTGTTGGGGAAGGAGATGGGATGAGGAAGGGTGGTGAGTTGGTAGTACAAAGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCACATTTGCCTAAATCATCTTGTGAGTTTCTAATCAATAGAGGAGGAGTTGTGGGAGTTGAAAACCTAAACCAATGA

Protein sequence

MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQLPLSHGGLNASSLYLYTEFPFPFRRLHQLSQSFPQIPNPCDHVFLHPIHSARQLFDLMPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKRYSLAVVLTNQVVDVMDSNANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRDEEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVENLNQ

Homology

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BLAST of Sed0007175 vs. NCBI nr
Match: KAG7020901.1 (DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 487.3 bits (1253), Expect = 9.4e-134
Identity = 243/293 (82.94%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           M+PENLL LL+TTQKCTFGCPIID +VGGGV+C SLTEIVSESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQ----SFPQIPNPCDHVFLHPIHSARQLFDL 120
           PLS GGLNA+SLY++TEFPFPFRRL QLSQ    S+PQI NP DH+F+ P+HSA+QLFD+
Sbjct: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKR 180
           MPKIESFLAN++S LPTRLIV+DSIAA+FRSDFDNTPSDLKRRSALFF+ISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRD 240
           YSLAVVLTNQVVD+MDS+   NALRIGNLKSLCSSGRRVCPALG+AWANCVNSRLFLSR+
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVEN 288
           EEVVGEGDG+   GEL  QRRTRRWLHVVFAPHLPKSSCE++INR GVVGVE+
Sbjct: 241 EEVVGEGDGVVNSGEL-AQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 292

[Close]

BLAST of Sed0007175 vs. NCBI nr
Match: XP_022938282.1 (DNA repair protein XRCC3 homolog [Cucurbita moschata])

HSP 1 Score: 487.3 bits (1253), Expect = 9.4e-134
Identity = 243/293 (82.94%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           M+PENLL LL+TTQKCTFGCPIID +VGGGV+C SLTEIVSESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQ----SFPQIPNPCDHVFLHPIHSARQLFDL 120
           PLS GGL A+SLY++TEFPFPFRRL QLSQ    S+PQI NP DH+F+ P+HSA+QLFD+
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKR 180
           MPKIESFLAN++S LPTRLIV+DSIAA+FRSDFDNTPSDLKRRSALFF+ISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRD 240
           YSLAVVLTNQVVD+MDS+   NALRIGNLKSLCSSGRRVCPALG+AWANCVNSRLFLSR+
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVEN 288
           EEVVGEGDG+  GGEL  QRRTRRWLHVVFAPHLPKSSCE++INR GVVGVE+
Sbjct: 241 EEVVGEGDGVVNGGEL-AQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 292

[Close]

BLAST of Sed0007175 vs. NCBI nr
Match: XP_022969693.1 (DNA repair protein XRCC3 homolog [Cucurbita maxima])

HSP 1 Score: 485.0 bits (1247), Expect = 4.7e-133
Identity = 240/293 (81.91%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           M+PENLL LL+TT+KCTFGCPIID +VGGGV+C SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTRKCTFGCPIIDRSVGGGVACNSLTEIVAESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQ----SFPQIPNPCDHVFLHPIHSARQLFDL 120
           PLS GGLNASSLY++TEFPFPFRRL QLSQ    S+PQ PNP DH+F+ P+HSA+QLFD+
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKR 180
           MPKIESFLAN++S LPTRLIV+DSIAA+FRSDFDNTPSDLKRRSALFF+ISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRD 240
           YSLAVVLTNQVVD++DS+   +ALRIGNLKSLCSSGRRVCPALG+ WANCVNSRLFLSR+
Sbjct: 181 YSLAVVLTNQVVDLLDSSDGISALRIGNLKSLCSSGRRVCPALGITWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVEN 288
           EEVVGEGDG+  GGEL  QRRTRRWLHVVFAPHLPKSSCE++INR GVVGVE+
Sbjct: 241 EEVVGEGDGVVNGGEL-AQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 292

[Close]

BLAST of Sed0007175 vs. NCBI nr
Match: XP_023538317.1 (DNA repair protein XRCC3 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 482.3 bits (1240), Expect = 3.0e-132
Identity = 241/293 (82.25%), Postives = 267/293 (91.13%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           M+PENLL LL+TTQKCTFGCPIID +VGGGV+C SLTEIVSESGCGKTQLCLQL   AQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHFAQL 60

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQ----SFPQIPNPCDHVFLHPIHSARQLFDL 120
           PLS GGLNASSLY++TEFPFPFRRL Q SQ    S+PQ PNP DH+F+ P+HSA+QLFD+
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQFSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKR 180
           MPKIE FLAN++S LPTRLIV+DSIAA+FRSDFDNTPSDLKRRSALFF+ISGKLKLLAKR
Sbjct: 121 MPKIEFFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRD 240
           YSLAVVLTNQVVD+MDS+   +ALRIGNLKSLCSSGRRVCPALG+AWANCVNSRLFLSR+
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGISALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVEN 288
           EEVVGEGDG+  GGEL  QRRTRRWLHVVFAPHLPKSSCE++INR GVVGVE+
Sbjct: 241 EEVVGEGDGVVNGGEL-AQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 292

[Close]

BLAST of Sed0007175 vs. NCBI nr
Match: XP_004150781.1 (DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical protein Csa_021163 [Cucumis sativus])

HSP 1 Score: 480.3 bits (1235), Expect = 1.1e-131
Identity = 237/293 (80.89%), Postives = 266/293 (90.78%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           M+PENLL LL+TTQKCTFGCPIID +VGGGV+C SLTEIV+ESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQ----SFPQIPNPCDHVFLHPIHSARQLFDL 120
           PLS+GGLNASSLY++TEFPFPFRRL QLSQ    S+PQ  NP DH+F+ P+HSA QLFD+
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKR 180
           MPKIES L N+NS+LP RLIV+DSIAA+FRSDF+NTPSDLKRRS+LFF+ISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRD 240
           YSLAVVLTNQVVD+M S+   NALRIGNLK LCSS RRVCPALGLAWANCVNSRLFLSR+
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVEN 288
           EEVVGEG+GM  G ELV +RRTRRWLHVVFAPHLPKSSCE++INR GVVGVE+
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Sed0007175 vs. ExPASy Swiss-Prot
Match: Q9FKM5 (DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 9.5e-97
Identity = 175/298 (58.72%), Postives = 224/298 (75.17%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           + PENLL+   T +K T GC I+D  + GG+SC SLTEIV+ESGCGKTQLCLQLSLC QL
Sbjct: 6   IKPENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQL 65

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQSFPQI---------PNPCDHVFLHPIHSAR 120
           P+SHGGLN SSLYL++EFPFPFRRLHQLS +F Q           NPCDHVF+  +HS  
Sbjct: 66  PISHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVD 125

Query: 121 QLFDLMPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLK 180
            LFD+MP+I+ F+ N  +R P +LIV+DS+AA+FRS+FDNTPSDLK+RS+LFF+ISGKLK
Sbjct: 126 HLFDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLK 185

Query: 181 LLAKRYSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRL 240
            LA ++ LA+V+TNQV D+++++   + LRIGNL+ L SSGRRV P+LGLAWANCVNSR 
Sbjct: 186 QLASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRF 245

Query: 241 FLSR-DEEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVE 287
           F+SR D  +V +     +     V R  +R L +VF+P+LP SSCEF+I R G+  V+
Sbjct: 246 FISRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQ 303

[Close]

BLAST of Sed0007175 vs. ExPASy Swiss-Prot
Match: Q9CXE6 (DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.8e-34
Identity = 94/283 (33.22%), Postives = 146/283 (51.59%), Query Frame = 0


Query: 11  ETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQLPLSHGGLNAS 70
           E  Q+ + GCP++D  +GGG+  + +T +   S  GKTQL LQL L  Q P  +GGL A 
Sbjct: 77  EQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQFPRQYGGLEAG 136

Query: 71  SLYLYTEFPFPFRRLHQLSQSFPQIPNPCDHVFLHPIHSARQLF-DLMPKIESFLANQNS 130
           ++Y+ TE  FP +RL QL     ++        +  I  +  +F +    +++ L   + 
Sbjct: 137 AVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSNHIFIEHAADVDTLLECVSK 196

Query: 131 RLP-------TRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKRYSLAVV 190
           ++P        RL+VVDSIAA FR +F    S +  R+ L   +   L+ L+  +   V+
Sbjct: 197 KVPILLSRGMARLVVVDSIAAPFRCEFHLQASAI--RAKLLLSLGATLRRLSSTFRSPVL 256

Query: 191 LTNQVVDVMDSNANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRDEEVVGEGD 250
             NQV D+++   +  R     SL +S  R+ PALG+ WAN +  RL + R  E     D
Sbjct: 257 CINQVTDMVEDQQSVSR-----SLGASEERLSPALGITWANQLLMRLMVDRTHE-----D 316

Query: 251 GMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGV 286
            +  G    + R   R L V+FAPHLP SSC + ++  G+ G+
Sbjct: 317 DVTTG----LPRSPVRTLRVLFAPHLPLSSCCYTVSGEGIRGM 343

[Close]

BLAST of Sed0007175 vs. ExPASy Swiss-Prot
Match: O43542 (DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.3e-33
Identity = 94/279 (33.69%), Postives = 135/279 (48.39%), Query Frame = 0


Query: 14  QKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQLPLSHGGLNASSLY 73
           Q+ + GCP++DA + GG+    +TE+   S  GKTQL LQL L  Q P  HGGL A ++Y
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVY 139

Query: 74  LYTEFPFPFRRLHQLSQSFPQIPNPCDHVFLHPIHSARQLF-DLMPKIESFLANQNSRLP 133
           + TE  FP +RL QL    P++        L  +    Q+F + +  +++ L   N ++P
Sbjct: 140 ICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVP 199

Query: 134 -------TRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKRYSLAVVLTN 193
                   RL+V+DS+AA FR +FD+  S  + R      +   L+ L+  +   V+  N
Sbjct: 200 VLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARH--LQSLGATLRELSSAFQSPVLCIN 259

Query: 194 QVVDVMDSNANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRDEEVVGEGDGMR 253
           QV + M+    A        L     RV PALG+ WAN +  RL   R  E         
Sbjct: 260 QVTEAMEEQGAA-----HGPLGFWDERVSPALGITWANQLLVRLLADRLRE--------- 319

Query: 254 KGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVG 285
              E        R L V+ APHLP SSC + I+  GV G
Sbjct: 320 ---EEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339

[Close]

BLAST of Sed0007175 vs. ExPASy Swiss-Prot
Match: Q08DH8 (DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.4e-31
Identity = 93/283 (32.86%), Postives = 137/283 (48.41%), Query Frame = 0


Query: 11  ETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQLPLSHGGLNAS 70
           E  Q+ + GCP++DA + GG+    +TE+   S  GKTQL LQL L  QLP  HGGL A 
Sbjct: 77  EQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQLPPRHGGLGAG 136

Query: 71  SLYLYTEFPFPFRRLHQLSQSFPQIPNPCDHVFLHPIHSARQLF-DLMPKIESFLANQNS 130
           ++Y+ TE  FP RRL QL     ++        +  I    Q+F +    +++ L     
Sbjct: 137 AVYVCTEDAFPSRRLQQLIAQQQRLRADVPGHVISKIRFGHQIFIEHAADVDTLLQCVRE 196

Query: 131 RLP-------TRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKRYSLAVV 190
           ++P        RL+V+DS+AA FR +FD   + L  R+     +  +L+ L+  +   V+
Sbjct: 197 KVPVLLARGMARLVVIDSVAAPFRCEFDG--AALALRAQRLLALGAELRRLSCAFRSPVL 256

Query: 191 LTNQVVDVMDSNANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRDEEVVGEGD 250
             NQV + ++           + L +    + PALG+ WAN +  RL   R         
Sbjct: 257 CVNQVTEAVEE----------QDLVAGPPGMSPALGITWANQLLVRLLADRQRP------ 316

Query: 251 GMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGV 286
              +   L    RT   L VVFAPHLP SSC + I   GV G+
Sbjct: 317 ---EEAPLTPPGRT---LRVVFAPHLPASSCSYTIAAEGVRGM 335

[Close]

BLAST of Sed0007175 vs. ExPASy Swiss-Prot
Match: O35719 (DNA repair protein RAD51 homolog 2 OS=Mus musculus OX=10090 GN=Rad51b PE=2 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-25
Identity = 82/222 (36.94%), Postives = 123/222 (55.41%), Query Frame = 0


Query: 23  IDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQLPLSHGGLNASSLYLYTEFPFPF 82
           +D A+ GGV C SLTEI    GCGKTQ C+ +S+ A LP S GGL  + +Y+ TE  F  
Sbjct: 90  LDEALHGGVPCGSLTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVYIDTESAFTA 149

Query: 83  RRLHQLSQS-FPQIPNPCDHVFL--HPIHSARQLF--DLMPKIESFLANQNSRLPTRLIV 142
            RL ++++S FPQ  N  + + L    +H  R+L    L+ ++ES L  +      +L++
Sbjct: 150 ERLVEIAESRFPQYFNTEEKLLLTSSRVHLCRELTCEGLLQRLES-LEEEIISKGVKLVI 209

Query: 143 VDSIAAVFRSDFD-NTPSDLKRRSALFFEISGKLKLLAKRYSLAVVLTNQVV----DVMD 202
           VDSIA+V R +FD     ++K R+    + +  LK LA  +S+ V+LTNQ+       + 
Sbjct: 210 VDSIASVVRKEFDPKLQGNIKERNKFLGKGASLLKYLAGEFSIPVILTNQITTHLSGALP 269

Query: 203 SNANALRIGNLKSL---CSSGRRVCPALGLAWANCVNSRLFL 232
           S A+ +   +  SL    S    +  ALG  W +CVN+RL L
Sbjct: 270 SQADLVSPADDLSLSEGTSGSSCLVAALGNTWGHCVNTRLIL 310

[Close]

BLAST of Sed0007175 vs. ExPASy TrEMBL
Match: A0A6J1FDM2 (DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 PE=4 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 4.6e-134
Identity = 243/293 (82.94%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           M+PENLL LL+TTQKCTFGCPIID +VGGGV+C SLTEIVSESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQ----SFPQIPNPCDHVFLHPIHSARQLFDL 120
           PLS GGL A+SLY++TEFPFPFRRL QLSQ    S+PQI NP DH+F+ P+HSA+QLFD+
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKR 180
           MPKIESFLAN++S LPTRLIV+DSIAA+FRSDFDNTPSDLKRRSALFF+ISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRD 240
           YSLAVVLTNQVVD+MDS+   NALRIGNLKSLCSSGRRVCPALG+AWANCVNSRLFLSR+
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVEN 288
           EEVVGEGDG+  GGEL  QRRTRRWLHVVFAPHLPKSSCE++INR GVVGVE+
Sbjct: 241 EEVVGEGDGVVNGGEL-AQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 292

[Close]

BLAST of Sed0007175 vs. ExPASy TrEMBL
Match: A0A6J1I1Q9 (DNA repair protein XRCC3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468643 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 2.3e-133
Identity = 240/293 (81.91%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           M+PENLL LL+TT+KCTFGCPIID +VGGGV+C SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTRKCTFGCPIIDRSVGGGVACNSLTEIVAESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQ----SFPQIPNPCDHVFLHPIHSARQLFDL 120
           PLS GGLNASSLY++TEFPFPFRRL QLSQ    S+PQ PNP DH+F+ P+HSA+QLFD+
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKR 180
           MPKIESFLAN++S LPTRLIV+DSIAA+FRSDFDNTPSDLKRRSALFF+ISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRD 240
           YSLAVVLTNQVVD++DS+   +ALRIGNLKSLCSSGRRVCPALG+ WANCVNSRLFLSR+
Sbjct: 181 YSLAVVLTNQVVDLLDSSDGISALRIGNLKSLCSSGRRVCPALGITWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVEN 288
           EEVVGEGDG+  GGEL  QRRTRRWLHVVFAPHLPKSSCE++INR GVVGVE+
Sbjct: 241 EEVVGEGDGVVNGGEL-AQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 292

[Close]

BLAST of Sed0007175 vs. ExPASy TrEMBL
Match: A0A0A0LK93 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 5.6e-132
Identity = 237/293 (80.89%), Postives = 266/293 (90.78%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           M+PENLL LL+TTQKCTFGCPIID +VGGGV+C SLTEIV+ESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQ----SFPQIPNPCDHVFLHPIHSARQLFDL 120
           PLS+GGLNASSLY++TEFPFPFRRL QLSQ    S+PQ  NP DH+F+ P+HSA QLFD+
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKR 180
           MPKIES L N+NS+LP RLIV+DSIAA+FRSDF+NTPSDLKRRS+LFF+ISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRD 240
           YSLAVVLTNQVVD+M S+   NALRIGNLK LCSS RRVCPALGLAWANCVNSRLFLSR+
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVEN 288
           EEVVGEG+GM  G ELV +RRTRRWLHVVFAPHLPKSSCE++INR GVVGVE+
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Sed0007175 vs. ExPASy TrEMBL
Match: A0A5A7UPR6 (DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00560 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.6e-131
Identity = 235/293 (80.20%), Postives = 264/293 (90.10%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           M+PENLL LL+TTQKCTFGCP ID +VGGG++C SLTEIV+ESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQ----SFPQIPNPCDHVFLHPIHSARQLFDL 120
           PLS+GGLNASSLY++TEFPFPFRRL QLSQ    S+PQ  NP DH+F+ P+HSA QLFD+
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKR 180
           MPKIES L N+NS LP RLIV+DSIAA+FRSDFDNTPSDLKRRS+LFF+ISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRD 240
           YSLAVVLTNQVVD+M S+   NALRIGNLK LCSS RRVCPALGLAWANCVNSRLFLSR+
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVEN 288
           EEVVGEG+GM  G ELV +R+TRRWLHVVFAPHLPKSSCE++INR GVVGVE+
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Sed0007175 vs. ExPASy TrEMBL
Match: A0A1S3BRJ5 (DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.6e-131
Identity = 235/293 (80.20%), Postives = 264/293 (90.10%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           M+PENLL LL+TTQKCTFGCP ID +VGGG++C SLTEIV+ESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQ----SFPQIPNPCDHVFLHPIHSARQLFDL 120
           PLS+GGLNASSLY++TEFPFPFRRL QLSQ    S+PQ  NP DH+F+ P+HSA QLFD+
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKR 180
           MPKIES L N+NS LP RLIV+DSIAA+FRSDFDNTPSDLKRRS+LFF+ISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRD 240
           YSLAVVLTNQVVD+M S+   NALRIGNLK LCSS RRVCPALGLAWANCVNSRLFLSR+
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVEN 288
           EEVVGEG+GM  G ELV +R+TRRWLHVVFAPHLPKSSCE++INR GVVGVE+
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Sed0007175 vs. TAIR 10
Match: AT5G57450.1 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 354.8 bits (909), Expect = 6.8e-98
Identity = 175/298 (58.72%), Postives = 224/298 (75.17%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           + PENLL+   T +K T GC I+D  + GG+SC SLTEIV+ESGCGKTQLCLQLSLC QL
Sbjct: 6   IKPENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQL 65

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQSFPQI---------PNPCDHVFLHPIHSAR 120
           P+SHGGLN SSLYL++EFPFPFRRLHQLS +F Q           NPCDHVF+  +HS  
Sbjct: 66  PISHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVD 125

Query: 121 QLFDLMPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLK 180
            LFD+MP+I+ F+ N  +R P +LIV+DS+AA+FRS+FDNTPSDLK+RS+LFF+ISGKLK
Sbjct: 126 HLFDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLK 185

Query: 181 LLAKRYSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRL 240
            LA ++ LA+V+TNQV D+++++   + LRIGNL+ L SSGRRV P+LGLAWANCVNSR 
Sbjct: 186 QLASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRF 245

Query: 241 FLSR-DEEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVE 287
           F+SR D  +V +     +     V R  +R L +VF+P+LP SSCEF+I R G+  V+
Sbjct: 246 FISRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQ 303

[Close]

BLAST of Sed0007175 vs. TAIR 10
Match: AT5G57450.2 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 354.8 bits (909), Expect = 6.8e-98
Identity = 175/298 (58.72%), Postives = 224/298 (75.17%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           + PENLL+   T +K T GC I+D  + GG+SC SLTEIV+ESGCGKTQLCLQLSLC QL
Sbjct: 6   IKPENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQL 65

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQSFPQI---------PNPCDHVFLHPIHSAR 120
           P+SHGGLN SSLYL++EFPFPFRRLHQLS +F Q           NPCDHVF+  +HS  
Sbjct: 66  PISHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVD 125

Query: 121 QLFDLMPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLK 180
            LFD+MP+I+ F+ N  +R P +LIV+DS+AA+FRS+FDNTPSDLK+RS+LFF+ISGKLK
Sbjct: 126 HLFDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLK 185

Query: 181 LLAKRYSLAVVLTNQVVDVMDSN--ANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRL 240
            LA ++ LA+V+TNQV D+++++   + LRIGNL+ L SSGRRV P+LGLAWANCVNSR 
Sbjct: 186 QLASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRF 245

Query: 241 FLSR-DEEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVE 287
           F+SR D  +V +     +     V R  +R L +VF+P+LP SSCEF+I R G+  V+
Sbjct: 246 FISRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQ 303

[Close]

BLAST of Sed0007175 vs. TAIR 10
Match: AT2G45280.1 (RAS associated with diabetes protein 51C )

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-21
Identity = 77/299 (25.75%), Postives = 135/299 (45.15%), Query Frame = 0


Query: 5   NLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQLPLSH 64
           ++L   E+  + T  C  +D  +GGG+SC+ +TEI    G GKTQ+ +QLS+  Q+P   
Sbjct: 94  DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 153

Query: 65  GGLNASSLYLYTEFPFPFRRLHQLSQSFPQ---------------------IPNPCDHVF 124
           GGL   ++Y+ TE  F   R  Q++++  +                       +  +++F
Sbjct: 154 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 213

Query: 125 LHPIHSARQLFDLMPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALF 184
              + S  +   L+  +E F++        ++++VDSI   FR D+D    DL +R+ + 
Sbjct: 214 YFRVCSYTEQIALVNHLEKFISENKD---VKVVIVDSITFHFRQDYD----DLAQRTRVL 273

Query: 185 FEISGKLKLLAKRYSLAVVLTNQVVDVMDSNANALRIGNLKSLCSSGRRVCPALGLAWAN 244
            E++ K   LAK++SLAVVL NQV       +  L +               ALG +W++
Sbjct: 274 SEMALKFMKLAKKFSLAVVLLNQVTTKFSEGSFQLAL---------------ALGDSWSH 333

Query: 245 CVNSRLFLSRDEEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGV 283
              +R+ L         GD               R+ ++  +P LP +S  + +   G+
Sbjct: 334 SCTNRVIL------YWNGD--------------ERYAYIDKSPSLPSASASYTVTSRGL 350

[Close]

BLAST of Sed0007175 vs. TAIR 10
Match: AT2G45280.2 (RAS associated with diabetes protein 51C )

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-21
Identity = 77/299 (25.75%), Postives = 135/299 (45.15%), Query Frame = 0


Query: 5   NLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQLPLSH 64
           ++L   E+  + T  C  +D  +GGG+SC+ +TEI    G GKTQ+ +QLS+  Q+P   
Sbjct: 118 DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 177

Query: 65  GGLNASSLYLYTEFPFPFRRLHQLSQSFPQ---------------------IPNPCDHVF 124
           GGL   ++Y+ TE  F   R  Q++++  +                       +  +++F
Sbjct: 178 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 237

Query: 125 LHPIHSARQLFDLMPKIESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALF 184
              + S  +   L+  +E F++        ++++VDSI   FR D+D    DL +R+ + 
Sbjct: 238 YFRVCSYTEQIALVNHLEKFISENKD---VKVVIVDSITFHFRQDYD----DLAQRTRVL 297

Query: 185 FEISGKLKLLAKRYSLAVVLTNQVVDVMDSNANALRIGNLKSLCSSGRRVCPALGLAWAN 244
            E++ K   LAK++SLAVVL NQV       +  L +               ALG +W++
Sbjct: 298 SEMALKFMKLAKKFSLAVVLLNQVTTKFSEGSFQLAL---------------ALGDSWSH 357

Query: 245 CVNSRLFLSRDEEVVGEGDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGV 283
              +R+ L         GD               R+ ++  +P LP +S  + +   G+
Sbjct: 358 SCTNRVIL------YWNGD--------------ERYAYIDKSPSLPSASASYTVTSRGL 374

[Close]

BLAST of Sed0007175 vs. TAIR 10
Match: AT3G22880.1 (DNA repair (Rad51) family protein )

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-17
Identity = 77/287 (26.83%), Postives = 127/287 (44.25%), Query Frame = 0


Query: 1   MSPENLLQLLETTQKCTFGCPIIDAAVGGGVSCKSLTEIVSESGCGKTQLCLQLSLCAQL 60
           M+  + L   ++  K T GC  +D  +GGG+   ++TE   E   GKTQL   L +  QL
Sbjct: 93  MTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQL 152

Query: 61  PLSHGGLNASSLYLYTEFPFPFRRLHQLSQSFPQIPNPCDHVFLHPIHSARQLFDLMPKI 120
           P +  G N    Y+ TE  F   R+  +++ F   P     V  + I++    ++    +
Sbjct: 153 PTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGA---VLDNIIYARAYTYEHQYNL 212

Query: 121 ESFLANQNSRLPTRLIVVDSIAAVFRSDFDNTPSDLKRRSALFFEISGKLKLLAKRYSLA 180
              LA + S  P R+++VDSI A+FR DF     +L  R     ++  +L  +A+ +++A
Sbjct: 213 LLGLAAKMSEEPFRILIVDSIIALFRVDFTGR-GELADRQQKLAQMLSRLIKIAEEFNVA 272

Query: 181 VVLTNQVVDVMDSNANALRIGNLKSLCSSGRRVCPALGLAWANCVNSRLFLSRDEEVVGE 240
           V +TNQV+         + I + K          PA G   A+    RL   +     G+
Sbjct: 273 VYMTNQVI---ADPGGGMFISDPKK---------PAGGHVLAHAATIRLLFRK-----GK 332

Query: 241 GDGMRKGGELVVQRRTRRWLHVVFAPHLPKSSCEFLINRGGVVGVEN 288
           GD               R   V  AP+L ++   F I +GG+   ++
Sbjct: 333 GD--------------TRVCKVYDAPNLAEAEASFQITQGGIADAKD 344

The following BLAST results are available for this feature:

BLAST of Sed0007175 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020901.1	9.4e-134	82.94	DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_022938282.1	9.4e-134	82.94	DNA repair protein XRCC3 homolog [Cucurbita moschata]	[more]
XP_022969693.1	4.7e-133	81.91	DNA repair protein XRCC3 homolog [Cucurbita maxima]	[more]
XP_023538317.1	3.0e-132	82.25	DNA repair protein XRCC3 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_004150781.1	1.1e-131	80.89	DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical prot...	[more]

BLAST of Sed0007175 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKM5	9.5e-97	58.72	DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 S...	[more]
Q9CXE6	8.8e-34	33.22	DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1	[more]
O43542	3.3e-33	33.69	DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1	[more]
Q08DH8	2.4e-31	32.86	DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1	[more]
O35719	1.2e-25	36.94	DNA repair protein RAD51 homolog 2 OS=Mus musculus OX=10090 GN=Rad51b PE=2 SV=2	[more]

BLAST of Sed0007175 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDM2	4.6e-134	82.94	DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 P...	[more]
A0A6J1I1Q9	2.3e-133	81.91	DNA repair protein XRCC3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468643 PE=...	[more]
A0A0A0LK93	5.6e-132	80.89	RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4...	[more]
A0A5A7UPR6	3.6e-131	80.20	DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BRJ5	3.6e-131	80.20	DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV...	[more]

BLAST of Sed0007175 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57450.1	6.8e-98	58.72	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT5G57450.2	6.8e-98	58.72	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT2G45280.1	3.0e-21	25.75	RAS associated with diabetes protein 51C	[more]
AT2G45280.2	3.0e-21	25.75	RAS associated with diabetes protein 51C	[more]
AT3G22880.1	1.2e-17	26.83	DNA repair (Rad51) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016467	DNA recombination and repair protein, RecA-like	PIRSF	PIRSF005856	Rad51	coord: 3..287 e-value: 2.7E-48 score: 162.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 11..289 e-value: 7.8E-61 score: 207.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 15..284
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 14..283 e-value: 2.7E-40 score: 138.3
None	No IPR available	PANTHER	PTHR46487	DNA REPAIR PROTEIN XRCC3	coord: 1..289
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 12..187 score: 46.836662
IPR033925	Rad51/DMC1/RadA	CDD	cd01123	Rad51_DMC1_radA	coord: 17..283 e-value: 1.05395E-80 score: 241.719

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007175.1	Sed0007175.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045003	double-strand break repair via synthesis-dependent strand annealing
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0071140	resolution of mitotic recombination intermediates
biological_process	GO:0090656	t-circle formation
biological_process	GO:0000722	telomere maintenance via recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0033065	Rad51C-XRCC3 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0000400	four-way junction DNA binding
molecular_function	GO:0003677	DNA binding