Sed0007024 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCCCCATCTCTAAATGACTCTTCTCGAACTTCACATTCAAAATTACTTCACGAAACCATCACCCATTATTAGCCTTCCAAACAAAACCAACCATCAACAACTGGCGATTTCCCTGCACAAAACCAGCATCATTATGTTCCTTCTTTTGCTTTTCCTTTACCTATAAATACAATTCTTTTCCATTCACAACTTCTTGCCTCCAACACAAACATTCCCCTCTTTCTCTCTGTTTCAACGGCCATGGCTTTACAATGGCTGCTTCATTCGACATCTTACCTTCTCGGGTCCCCGATCGGGGTCCTCGGTTACGGTCACGAGGGAAGCTCAAAAGGGGAAAAGGGATGTGAGGAGATTTGGAATTCTGGGTTTCAAATGCCTGTCCATTACCCTCGTTACAAGAGGGCAGATTATCAGAAGATGGAGGAGTGGAAAGTGGATCAGCTTCTTAAGGAATATGGGTTGAGTTTTTGTGGGAGTTTGGAGGAGAAAAGGGCCTTTGCAATGGGGACTTTTCTATGGCCTGATCAGTTTTAATGGCTATTTCTCATCTTCATTTCTTGAGGCTTCTGCTCTGCCTGTGATTGGATAAAAAAACTAATGGTTTTGATGCCTCAGCCTGTTTAATTCATAATGTTCATGTCTTATGAAACATGAAGTTTCTAGAAGTCCAACACAGTTTCACATGTTTTCTCTGTTGATGTTTGATAGAATATGATTTCTATCGTTTTCCTGTATAATAAGGGCAAGGCTTTTTTATTTTTCTTTCTTCTTTCTATGTTAAGATCCTTTCCCATTTTGCAATGGGTAAGCAGATGGTTGTTATGAAGTAAAATAATTGAAATCGTTTAGGGAATGAGAATGATTATGGGATATAATTCCCTTTACTCGTGTTTGTATCATCGATAATCAGTCTCTTCATATTCAATATTCATTTCTTCCATAA CTCCCCATCTCTAAATGACTCTTCTCGAACTTCACATTCAAAATTACTTCACGAAACCATCACCCATTATTAGCCTTCCAAACAAAACCAACCATCAACAACTGGCGATTTCCCTGCACAAAACCAGCATCATTATGTTCCTTCTTTTGCTTTTCCTTTACCTATAAATACAATTCTTTTCCATTCACAACTTCTTGCCTCCAACACAAACATTCCCCTCTTTCTCTCTGTTTCAACGGCCATGGCTTTACAATGGCTGCTTCATTCGACATCTTACCTTCTCGGGTCCCCGATCGGGGTCCTCGGTTACGGTCACGAGGGAAGCTCAAAAGGGGAAAAGGGATGTGAGGAGATTTGGAATTCTGGGTTTCAAATGCCTGTCCATTACCCTCGTTACAAGAGGGCAGATTATCAGAAGATGGAGGAGTGGAAAGTGGATCAGCTTCTTAAGGAATATGGGTTGAGTTTTTGTGGGAGTTTGGAGGAGAAAAGGGCCTTTGCAATGGGGACTTTTCTATGGCCTGATCAGTTTTAATGGCTATTTCTCATCTTCATTTCTTGAGGCTTCTGCTCTGCCTGTGATTGGATAAAAAAACTAATGGTTTTGATGCCTCAGCCTGTTTAATTCATAATGTTCATGTCTTATGAAACATGAAGTTTCTAGAAGTCCAACACAGTTTCACATGTTTTCTCTGTTGATGTTTGATAGAATATGATTTCTATCGTTTTCCTGTATAATAAGGGCAAGGCTTTTTTATTTTTCTTTCTTCTTTCTATGTTAAGATCCTTTCCCATTTTGCAATGGGTAAGCAGATGGTTGTTATGAAGTAAAATAATTGAAATCGTTTAGGGAATGAGAATGATTATGGGATATAATTCCCTTTACTCGTGTTTGTATCATCGATAATCAGTCTCTTCATATTCAATATTCATTTCTTCCATAA ATGGCTTTACAATGGCTGCTTCATTCGACATCTTACCTTCTCGGGTCCCCGATCGGGGTCCTCGGTTACGGTCACGAGGGAAGCTCAAAAGGGGAAAAGGGATGTGAGGAGATTTGGAATTCTGGGTTTCAAATGCCTGTCCATTACCCTCGTTACAAGAGGGCAGATTATCAGAAGATGGAGGAGTGGAAAGTGGATCAGCTTCTTAAGGAATATGGGTTGAGTTTTTGTGGGAGTTTGGAGGAGAAAAGGGCCTTTGCAATGGGGACTTTTCTATGGCCTGATCAGTTTTAA MALQWLLHSTSYLLGSPIGVLGYGHEGSSKGEKGCEEIWNSGFQMPVHYPRYKRADYQKMEEWKVDQLLKEYGLSFCGSLEEKRAFAMGTFLWPDQF Homology
BLAST of Sed0007024 vs. NCBI nr
Match: TYK12988.1 (uncharacterized protein E5676_scaffold255G005850 [Cucumis melo var. makuwa]) HSP 1 Score: 154.8 bits (390), Expect = 3.7e-34 Identity = 72/97 (74.23%), Postives = 81/97 (83.51%), Query Frame = 0
BLAST of Sed0007024 vs. NCBI nr
Match: XP_038882557.1 (uncharacterized protein LOC120073788 [Benincasa hispida]) HSP 1 Score: 154.5 bits (389), Expect = 4.8e-34 Identity = 74/97 (76.29%), Postives = 82/97 (84.54%), Query Frame = 0
BLAST of Sed0007024 vs. NCBI nr
Match: KAG6603827.1 (hypothetical protein SDJN03_04436, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034009.1 hypothetical protein SDJN02_03735, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 154.1 bits (388), Expect = 6.3e-34 Identity = 77/99 (77.78%), Postives = 84/99 (84.85%), Query Frame = 0
BLAST of Sed0007024 vs. NCBI nr
Match: XP_011658113.1 (uncharacterized protein LOC105435946 [Cucumis sativus] >KGN49041.1 hypothetical protein Csa_003579 [Cucumis sativus]) HSP 1 Score: 153.7 bits (387), Expect = 8.2e-34 Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 0
BLAST of Sed0007024 vs. NCBI nr
Match: KAG6594704.1 (hypothetical protein SDJN03_11257, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026671.1 hypothetical protein SDJN02_10674, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32 Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 0
BLAST of Sed0007024 vs. ExPASy TrEMBL
Match: A0A5D3CP92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005850 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34 Identity = 72/97 (74.23%), Postives = 81/97 (83.51%), Query Frame = 0
BLAST of Sed0007024 vs. ExPASy TrEMBL
Match: A0A0A0KMW8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511080 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 4.0e-34 Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 0
BLAST of Sed0007024 vs. ExPASy TrEMBL
Match: A0A6J1BUU9 (uncharacterized protein LOC111005569 OS=Momordica charantia OX=3673 GN=LOC111005569 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 8.6e-29 Identity = 69/104 (66.35%), Postives = 77/104 (74.04%), Query Frame = 0
BLAST of Sed0007024 vs. ExPASy TrEMBL
Match: B9SA77 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0863040 PE=4 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24 Identity = 63/117 (53.85%), Postives = 76/117 (64.96%), Query Frame = 0
BLAST of Sed0007024 vs. ExPASy TrEMBL
Match: A0A2N9EZP3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8195 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 4.9e-24 Identity = 58/100 (58.00%), Postives = 73/100 (73.00%), Query Frame = 0
BLAST of Sed0007024 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 85.5 bits (210), Expect = 2.6e-17 Identity = 35/61 (57.38%), Postives = 51/61 (83.61%), Query Frame = 0
BLAST of Sed0007024 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 79.0 bits (193), Expect = 2.4e-15 Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 0
BLAST of Sed0007024 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 79.0 bits (193), Expect = 2.4e-15 Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0
BLAST of Sed0007024 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14 Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0
BLAST of Sed0007024 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 55.5 bits (132), Expect = 2.8e-08 Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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