Sed0006991 (gene) Chayote v1

Overview


Name	Sed0006991
Type	gene
Organism	Sechium edule (Chayote v1)
Description	transcription factor HY5-like
Location	LG11: 34085072 .. 34085773 (-)
RNA-Seq Expression	Sed0006991
Synteny	Sed0006991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTCTTCTTTTAACGGCAACAAAATTTATGTCAAATCTTTATTAAAAGAGATTAAAGAAAAACTACGAAATGCAGGAGCAGGCGACGAGTTCAGCAGCTGCTAGTTCTTTGCCTTCGAGCAGTGAAAGATCCTCCAGCTCTGCTCTTAATCTCGAAGTTAAAGAAGGTAAATCGGATCGTTTCTGCTCTTCGTTTTTACGATCACTGCTCGTTTCTTGCTTAATTTTGTTATAATTTCGTGTTTATTTAGAGATTTCTGATTTTTTTTCTGTGAAATGAGTGTCTGGCGAGAGACTGAATTTGATGAGAAATTTAGGTATGGAGAGCGATGAGGAGATCCGGAGAGTACCGGAGATAGGCGGCGAATCAGCCGGAACTTCAGCCTCCGGTCGGGACAACGGCTCAATAGCCGGTCCAGACCGAGTTCAGGTGTCTCGGGAGGGTCAAAGGAAGAGAGGAAGAAGTCCGGCTGACAAAGAATGCAAGAGACTGAAGAGGTCATACTTCAGTAGACCAATCTACTATAAAGACTCTCTTGATCACTAGACCAATCTACTATAATGTCCCATGACTATTTAGTTGAGAGTCTCAATCGCCGAGGGTTTTGTTGAGGACTTGGGAGCAATGCCTAAGAAATTTGGATAAAATATATAATTGAGTTTATGTTTTCATATATATTTAAAAATATATATATTCAAC

mRNA sequence

GTTTTTCTTCTTTTAACGGCAACAAAATTTATGTCAAATCTTTATTAAAAGAGATTAAAGAAAAACTACGAAATGCAGGAGCAGGCGACGAGTTCAGCAGCTGCTAGTTCTTTGCCTTCGAGCAGTGAAAGATCCTCCAGCTCTGCTCTTAATCTCGAAGTTAAAGAAGGTATGGAGAGCGATGAGGAGATCCGGAGAGTACCGGAGATAGGCGGCGAATCAGCCGGAACTTCAGCCTCCGGTCGGGACAACGGCTCAATAGCCGGTCCAGACCGAGTTCAGGTGTCTCGGGAGGGTCAAAGGAAGAGAGGAAGAAGTCCGGCTGACAAAGAATGCAAGAGACTGAAGAGGTCATACTTCAGTAGACCAATCTACTATAAAGACTCTCTTGATCACTAGACCAATCTACTATAATGTCCCATGACTATTTAGTTGAGAGTCTCAATCGCCGAGGGTTTTGTTGAGGACTTGGGAGCAATGCCTAAGAAATTTGGATAAAATATATAATTGAGTTTATGTTTTCATATATATTTAAAAATATATATATTCAAC

Coding sequence (CDS)

ATGCAGGAGCAGGCGACGAGTTCAGCAGCTGCTAGTTCTTTGCCTTCGAGCAGTGAAAGATCCTCCAGCTCTGCTCTTAATCTCGAAGTTAAAGAAGGTATGGAGAGCGATGAGGAGATCCGGAGAGTACCGGAGATAGGCGGCGAATCAGCCGGAACTTCAGCCTCCGGTCGGGACAACGGCTCAATAGCCGGTCCAGACCGAGTTCAGGTGTCTCGGGAGGGTCAAAGGAAGAGAGGAAGAAGTCCGGCTGACAAAGAATGCAAGAGACTGAAGAGGTCATACTTCAGTAGACCAATCTACTATAAAGACTCTCTTGATCACTAG

Protein sequence

MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDNGSIAGPDRVQVSREGQRKRGRSPADKECKRLKRSYFSRPIYYKDSLDH

Homology

[Close]

BLAST of Sed0006991 vs. NCBI nr
Match: NP_001284656.1 (Transcription factor HY5-like [Cucumis melo] >XP_004138731.1 transcription factor HY5 [Cucumis sativus] >XP_022131702.1 transcription factor HY5-like [Momordica charantia] >XP_038885580.1 transcription factor HY5-like [Benincasa hispida] >KAA0064935.1 transcription factor HY5 [Cucumis melo var. makuwa] >ADX23549.1 bZIP2 [Cucumis melo] >KGN62939.1 hypothetical protein Csa_022614 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 7.0e-34
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDN 60
          MQEQATSSAAASSLPSSSERSSSSAL+LEVKEGMESDEEIRRVPEIGGESAGTSASGRD 
Sbjct: 1  MQEQATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGESAGTSASGRDT 60

Query: 61 GSIAGPDRVQVSREGQRKRGRSPADKECKRLKR 94
          GS+AGPDRVQVSREGQRKRGRSPADKE KRLKR
Sbjct: 61 GSVAGPDRVQVSREGQRKRGRSPADKESKRLKR 93

[Close]

BLAST of Sed0006991 vs. NCBI nr
Match: XP_022996780.1 (transcription factor HY5-like [Cucurbita maxima])

HSP 1 Score: 147.5 bits (371), Expect = 6.6e-32
Identity = 85/93 (91.40%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDN 60
          MQEQATSSAAASSLPSSSERSSSSAL+LE+KEGMESDEEIRRVPEIGGESAGTSASGR+ 
Sbjct: 1  MQEQATSSAAASSLPSSSERSSSSALHLELKEGMESDEEIRRVPEIGGESAGTSASGRET 60

Query: 61 GSIAGPDRVQVSREGQRKRGRSPADKECKRLKR 94
          GS+AGPDRVQVSRE QRKRGR+PADKE KRLKR
Sbjct: 61 GSLAGPDRVQVSRESQRKRGRTPADKESKRLKR 93

[Close]

BLAST of Sed0006991 vs. NCBI nr
Match: KAG6598576.1 (Transcription factor HY5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.1 bits (370), Expect = 8.6e-32
Identity = 85/93 (91.40%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDN 60
          MQEQATSSAAASSLPSSSERSSSSAL+LEVKEG+ESDEEIRRVPEIGGESAGTSASGR+ 
Sbjct: 1  MQEQATSSAAASSLPSSSERSSSSALHLEVKEGIESDEEIRRVPEIGGESAGTSASGRET 60

Query: 61 GSIAGPDRVQVSREGQRKRGRSPADKECKRLKR 94
          GS+AGPDRVQVSRE QRKRGR+PADKE KRLKR
Sbjct: 61 GSLAGPDRVQVSRESQRKRGRTPADKESKRLKR 93

[Close]

BLAST of Sed0006991 vs. NCBI nr
Match: KAG7029514.1 (Transcription factor HY5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.1 bits (370), Expect = 8.6e-32
Identity = 85/93 (91.40%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDN 60
          MQEQATSSAAASSLPSSSERSSSSAL+LEVKEG+ESDEEIRRVPEIGGESAGTSASGR+ 
Sbjct: 1  MQEQATSSAAASSLPSSSERSSSSALHLEVKEGIESDEEIRRVPEIGGESAGTSASGRET 60

Query: 61 GSIAGPDRVQVSREGQRKRGRSPADKECKRLKR 94
          GS+AGPDRVQVSRE QRKRGR+PADKE KRLKR
Sbjct: 61 GSLAGPDRVQVSRESQRKRGRTPADKESKRLKR 93

[Close]

BLAST of Sed0006991 vs. NCBI nr
Match: KAF3447136.1 (hypothetical protein FNV43_RR12316 [Rhamnella rubrinervis])

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-31
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDN 60
          MQEQATSS AASSLPSSSERSSSSAL++EVKEGMESDEEIRRVPEIGGESAGTSASGRD 
Sbjct: 1  MQEQATSSIAASSLPSSSERSSSSALHVEVKEGMESDEEIRRVPEIGGESAGTSASGRDT 60

Query: 61 GSIAGPDRVQVSREGQRKRGRSPADKECKRLKR 94
          GS+AGPDRVQV+ EGQRKRGRSPADKE KRLKR
Sbjct: 61 GSLAGPDRVQVTGEGQRKRGRSPADKESKRLKR 93

[Close]

BLAST of Sed0006991 vs. ExPASy Swiss-Prot
Match: O24646 (Transcription factor HY5 OS=Arabidopsis thaliana OX=3702 GN=HY5 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-24
Identity = 68/94 (72.34%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDN 60
          MQEQATSS AASSLPSSSERSSSSA +LE+KEG+ESDEEIRRVPE GGE+ G   SGR++
Sbjct: 1  MQEQATSSLAASSLPSSSERSSSSAPHLEIKEGIESDEEIRRVPEFGGEAVGKETSGRES 60

Query: 61 GSIAGPDRVQVS-REGQRKRGRSPADKECKRLKR 94
          GS  G +R Q +  E QRKRGR+PA+KE KRLKR
Sbjct: 61 GSATGQERTQATVGESQRKRGRTPAEKENKRLKR 94

[Close]

BLAST of Sed0006991 vs. ExPASy Swiss-Prot
Match: Q9SM50 (Transcription factor HY5 OS=Solanum lycopersicum OX=4081 GN=HY5 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-23
Identity = 73/94 (77.66%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAG-TSASGRD 60
          MQEQATSS AASSLPSSSERSSSSAL+ E+KEGMESD+EIRRVPE+GGE+ G TSASGRD
Sbjct: 1  MQEQATSSIAASSLPSSSERSSSSALHHELKEGMESDDEIRRVPEMGGEATGTTSASGRD 60

Query: 61 NGSIAGPDRVQVSREGQRKRGRSPADKECKRLKR 94
            S AG  + Q S   QRKRGRSPADKE KRLKR
Sbjct: 61 GVSAAG--QAQPSAGTQRKRGRSPADKENKRLKR 92

[Close]

BLAST of Sed0006991 vs. ExPASy TrEMBL
Match: F1DQG1 (BZIP2 OS=Cucumis melo OX=3656 GN=LOC103488299 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.4e-34
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDN 60
          MQEQATSSAAASSLPSSSERSSSSAL+LEVKEGMESDEEIRRVPEIGGESAGTSASGRD 
Sbjct: 1  MQEQATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGESAGTSASGRDT 60

Query: 61 GSIAGPDRVQVSREGQRKRGRSPADKECKRLKR 94
          GS+AGPDRVQVSREGQRKRGRSPADKE KRLKR
Sbjct: 61 GSVAGPDRVQVSREGQRKRGRSPADKESKRLKR 93

[Close]

BLAST of Sed0006991 vs. ExPASy TrEMBL
Match: A0A5A7VGC0 (Transcription factor HY5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002530 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.4e-34
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDN 60
          MQEQATSSAAASSLPSSSERSSSSAL+LEVKEGMESDEEIRRVPEIGGESAGTSASGRD 
Sbjct: 1  MQEQATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGESAGTSASGRDT 60

Query: 61 GSIAGPDRVQVSREGQRKRGRSPADKECKRLKR 94
          GS+AGPDRVQVSREGQRKRGRSPADKE KRLKR
Sbjct: 61 GSVAGPDRVQVSREGQRKRGRSPADKESKRLKR 93

[Close]

BLAST of Sed0006991 vs. ExPASy TrEMBL
Match: A0A0A0LPK1 (BZIP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G381650 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.4e-34
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDN 60
          MQEQATSSAAASSLPSSSERSSSSAL+LEVKEGMESDEEIRRVPEIGGESAGTSASGRD 
Sbjct: 1  MQEQATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGESAGTSASGRDT 60

Query: 61 GSIAGPDRVQVSREGQRKRGRSPADKECKRLKR 94
          GS+AGPDRVQVSREGQRKRGRSPADKE KRLKR
Sbjct: 61 GSVAGPDRVQVSREGQRKRGRSPADKESKRLKR 93

[Close]

BLAST of Sed0006991 vs. ExPASy TrEMBL
Match: A0A6J1BRS2 (transcription factor HY5-like OS=Momordica charantia OX=3673 GN=LOC111004810 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.4e-34
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDN 60
          MQEQATSSAAASSLPSSSERSSSSAL+LEVKEGMESDEEIRRVPEIGGESAGTSASGRD 
Sbjct: 1  MQEQATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGESAGTSASGRDT 60

Query: 61 GSIAGPDRVQVSREGQRKRGRSPADKECKRLKR 94
          GS+AGPDRVQVSREGQRKRGRSPADKE KRLKR
Sbjct: 61 GSVAGPDRVQVSREGQRKRGRSPADKESKRLKR 93

[Close]

BLAST of Sed0006991 vs. ExPASy TrEMBL
Match: A0A6J1K7Q9 (transcription factor HY5-like OS=Cucurbita maxima OX=3661 GN=LOC111491914 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.2e-32
Identity = 85/93 (91.40%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDN 60
          MQEQATSSAAASSLPSSSERSSSSAL+LE+KEGMESDEEIRRVPEIGGESAGTSASGR+ 
Sbjct: 1  MQEQATSSAAASSLPSSSERSSSSALHLELKEGMESDEEIRRVPEIGGESAGTSASGRET 60

Query: 61 GSIAGPDRVQVSREGQRKRGRSPADKECKRLKR 94
          GS+AGPDRVQVSRE QRKRGR+PADKE KRLKR
Sbjct: 61 GSLAGPDRVQVSRESQRKRGRTPADKESKRLKR 93

[Close]

BLAST of Sed0006991 vs. TAIR 10
Match: AT5G11260.1 (Basic-leucine zipper (bZIP) transcription factor family protein )

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-25
Identity = 68/94 (72.34%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 1  MQEQATSSAAASSLPSSSERSSSSALNLEVKEGMESDEEIRRVPEIGGESAGTSASGRDN 60
          MQEQATSS AASSLPSSSERSSSSA +LE+KEG+ESDEEIRRVPE GGE+ G   SGR++
Sbjct: 1  MQEQATSSLAASSLPSSSERSSSSAPHLEIKEGIESDEEIRRVPEFGGEAVGKETSGRES 60

Query: 61 GSIAGPDRVQVS-REGQRKRGRSPADKECKRLKR 94
          GS  G +R Q +  E QRKRGR+PA+KE KRLKR
Sbjct: 61 GSATGQERTQATVGESQRKRGRTPAEKENKRLKR 94

The following BLAST results are available for this feature:

BLAST of Sed0006991 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001284656.1	7.0e-34	95.70	Transcription factor HY5-like [Cucumis melo] >XP_004138731.1 transcription facto...	[more]
XP_022996780.1	6.6e-32	91.40	transcription factor HY5-like [Cucurbita maxima]	[more]
KAG6598576.1	8.6e-32	91.40	Transcription factor HY5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7029514.1	8.6e-32	91.40	Transcription factor HY5, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAF3447136.1	1.1e-31	91.40	hypothetical protein FNV43_RR12316 [Rhamnella rubrinervis]	[more]

BLAST of Sed0006991 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24646	5.2e-24	72.34	Transcription factor HY5 OS=Arabidopsis thaliana OX=3702 GN=HY5 PE=1 SV=1	[more]
Q9SM50	2.6e-23	77.66	Transcription factor HY5 OS=Solanum lycopersicum OX=4081 GN=HY5 PE=2 SV=1	[more]

BLAST of Sed0006991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
F1DQG1	3.4e-34	95.70	BZIP2 OS=Cucumis melo OX=3656 GN=LOC103488299 PE=2 SV=1	[more]
A0A5A7VGC0	3.4e-34	95.70	Transcription factor HY5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A0A0LPK1	3.4e-34	95.70	BZIP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G381650 PE=3 S...	[more]
A0A6J1BRS2	3.4e-34	95.70	transcription factor HY5-like OS=Momordica charantia OX=3673 GN=LOC111004810 PE=...	[more]
A0A6J1K7Q9	3.2e-32	91.40	transcription factor HY5-like OS=Cucurbita maxima OX=3661 GN=LOC111491914 PE=3 S...	[more]

BLAST of Sed0006991 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11260.1	3.7e-25	72.34	Basic-leucine zipper (bZIP) transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
None	No IPR available	PANTHER	PTHR46714:SF6	TRANSCRIPTIONAL ACTIVATOR HAC1	coord: 1..93
IPR044280	Transcriptional activator Hac1/HY5	PANTHER	PTHR46714	TRANSCRIPTIONAL ACTIVATOR HAC1	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006991.1	Sed0006991.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific