Sed0006848 (gene) Chayote v1

Overview


Name	Sed0006848
Type	gene
Organism	Sechium edule (Chayote v1)
Description	transcriptional regulator ATRX homolog isoform X2
Location	LG01: 18543535 .. 18547356 (+)
RNA-Seq Expression	Sed0006848
Synteny	Sed0006848

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAATATAAAATTGGGGGAAAATATTGGCTCGAAAGTCCAAACCAAAAACTATACTTGGCAGTAGGGCACAAAATCTCCAAAATCAAAGTCGGGAACCGCGGGTTTTGAAATGGGTTCTTATTTTCACCCAAAATTTTGAAAACCAGAAATATCCCCTTGTTCTTCAAAGTCCCAAATCCAGAAGAAAAAAAAAGTGTAAAACCGAGCCTTCACCAAACAGACCAACCCCACAAATTTCTTCTGAAAAAAACCCTCGTTTTCATTTTCGCCGAATTGATTCAGGTTCAAGAATGCCTTCCGAAGATCAAAAGCCGCTAAAGAAATCCAAAGCGGAGCTAGACGAAGCTGATGACGGAATATTCCTAGGCGCCCTTTTACAGAGGAAGAAACTCGCAAATGCGGGTTCTAAATCTGTGTCGAAGCCGAAGAAGGAAGAAGAAGACGGAGTGGGAAAGTCTCCGAAAATGGATTCTGGGTCTGCTTCCAAGAACACAAAGGTTAAGAAAGAAGAGCGTTTCAGCTCTGTCGATGGTGATTTTGACGAAAAGTCTACCAAAAAGAACTCTGCACCTAAGCGTGATATGGTTTGTACATCTTTTTTTTTTTTCTCTTTTTTTCGCATTAGTAATGGTGTTCTGTGCTTTGATTTTCTTCAACTGTTTAAGTTACTGTTTCGATGAGTGAGTGACTGAAAGTAGAGAAATCTGAGTATCCAAGGGGCGGTCTAGTCGGTAGAGGCTTCGGGTCTCCGAGGTATGCCCCTTTAGAGGTTTAAGGTTTGAAATGCCTTGTTGTCTCCAAGATCCGGACCTTGGGATGACCGTTGGTGCCCCTAGGTATGTAGTGGCGCAAAGCTCGGGTTCCTTGTTAAAAAAGAAAGTAGAGAAATCGACATAGAGGACAATAAAATGGAGTTTTATTAGAATGCACTAGTGTGCGGAAGTTGAATCACTGTTAGAAACCCCGATTTGTACAAAGTTTTTAGTGCAGTGTTTTGGGTTCTTTATGGGATATTCCCTTTTCATATTCTCTGATAGACCATGTATTTTAAAACTCAAGACAAACTTATGCACAATAGTCTATTGGGGCTTAGATGCAAGTAGACTTTTATTTGTGAGGTGCATTTATGTAAGAACATTCATAAAGAAGATAGAACATAGTTGAAGTGAGAATATTAAACAAAAAAAAAACTCTTAGGGTTTAGTAAATGCAAAAAAAAGAGTTCTAAATGCAAGGATTTCTATGTGTTAAAGGGTTAGTTAAACTGATTTTTGTGTGTTTAGAGCATGTCTTCTTACATGAGCCTCACCTATTCAAGGTTGGGTGCTAAACCTGTGCCTTGAGCCTATTGCGCGTCCTGAGTAAAAACACGGGTGAAAGTTATTAACATGTGTTTTTATGAATGGGCTGGGGAGATAGGAACTGAAGAAGAAGAAGGTGAAGGAGGAGGAGAAGAGCAAAAGCTCCAAGGGGGAGCTGGAGAGCCAGAAAAAAGAGAGAAAGCAAAAGAAGGTATATGATTTGCCTGGTCAGAAGAGAGATCCCCCAGAAGAGGTATCGAAGAATGTTCTTGTTTTGCTCCATATTAGTTTTGGGAGGTATTAGCTTTCTGTTTACGATATCTTTAGCTGATAGTTTTCACATGTTCTTGGTTATTTAGAGAGACTCACTGAGGCTGTTTTATGAATCGCTCTACAAGCAAATTCCCCACAGTGAAATGGCGCAGTTTTGGTAAGAAGATTGATTCTAGTTTTTATTTCTATGATATTATCAATATCAACTGTGTAATTGTGTTGCATTAGCGTTAGCAAGCTGGCAGTAGTCGTTTTGATAACTTGTAGATGTTTTGTTTTGCTTGAAATTGTGGGGATACTTTATTATTGCGTTATACGAACAAAAATTGTTTGTTTGTGGGCTAAGGTTTCTGAGAACACTCATGTTGAACATGTTTACTAGTTGAGTTCCTTATTTGTCATTTCCCATAGAGATTTTTTCTTTCTTTTTTTATTGGTGAGTATTCGTTCCAACTTATGCATACCTCGACTATTTTCACATGATAAATCGACAAATTGTCTGACCCTACAATTTGAATGTCAAGAAAACTTGTAGGAAATTAATTTCTAGATAGGTGGTCACCTCGAATGAAACCCATTATATTTTGATTTCTTAAAGCCCTCATGGCCACTACTAGGCCAATCTGTGATGGCTATCTACTAGTTTTCAAGTTTTCATTCTTGCAACTAAACTGATGGTTGGTCAGTATGAAACACACATAAGTTCATAACTAGTCACGTTCATGGCTTCATGCTACTTCTCATACCATGAACAAAACTAGTTATATTGGAGGGCTTATAAAAAAATTTATATTGGAGGAACTCATACCTATTTACATTGGCTGAATGGTTTCTGTTACCCAACATTTGATTTGTAACCTTCAATCTACGGCAAAGTAAACATTGATATGTTAAACACTGTCTTTATCAACCAGGATTTAATTGTGTTAGAATTGGAGCAGTGACAAATTGGTAGTGCACACAATGAATTAGGATTTTATACTTTTTCTTAATTGTTGACTTTTGCCTTTGGTGTGGAATGTATTTCTTGTCTCGTGGCTTTAGTTTTCTAGATATGAATGAAGACTAGATTAAGATCATCAGCCGTACACATTGTTAGTGAATACTAGATTAGGTTTTCCATCAGCTTAACACAACTCAATGAGCACTGAGTACAACTAAAATGGGCCAGTTATTCCCCAAAGCACGGCCTTGTTGGTAAAAGCTCTAATCTCCTAAGTGTATGCTCTTTTGGAGGTCTCCGGTTCGAAATCTACAATTAAATATTCTTTGTTGTCTCTCAAGTCCAGGTATTGTGATGGGGATGTAGGTATCCTGAGTACGTAGTAGGGTATCGCTCCGATTCTCCTTTATTAAAAATTCTAAAAAGGTCCGAGGTTGAAGACTTGGACTTTGAAGGTATGTTCCTTTCAAGGTCCCAGGTTCGAGACTCACCTGTGACATTGCTTTTTCGATGCCTCCTGGTACCTGGCCTAGGGACGGGAGTGGTTACCCTTGTTTCAAAAAAAAAAAAAAATCTAAAACGGGGCAGTTTCTCTAATTTACTATCTTATCTGATTTGTTACATTTTGGTAATCCCAGAAGCTCTCAGCACAATGTTTTGCAGATAATGTCAATCTTAGCCAACAAGCGCATTAAACAAATACTTTGCTGTATCTGATCATACTGTTTACGAGCATACGATATCAATGTTTCAATTTTCGTTTAAAAAAAGTAGTGAGTTTGAGCATGTTCTTCATTACTGGTTAACAATGGAGTTTGGTTTGCAGGATGATGGAGTCTGGTTTGTTATCCAAAGAACAAGCAAAGAAAGTTTTTGAAAAGAAGCAGAAGAAGACACCACTGCAAAAGTTGAGCTCCCCAGTTAAGACTGTGACTACCGCTGTGAAGAGTGCCACGAAAACTGCCATCGTCAAGAAAACTGTCCAATCTACTCCAGTTTCTTCGAATAAGAAGATGACTGCGGTCGACTCCAAAGTTGCAGCAAAACAGTCGAAGAAGCGCAAGTCCAAAGATGAAAGTTCAGAAGATGATTCAGATGATGATTTTATAATCAGTCGCAGCTTGAAGAAGAAACCAAGAGCAGCCTAATTAATGTGTAAATGGACAATCCTTTCTATTCAGAAGCTAATTTAAAATTTCTGATTAGTTGTTCTAAAACATTGAATTAACGTTATTAATGAGATAGAGACACCCCTTTGATCATGCTACTTACATTTATGTTATCTGATCTCTCTCTTTTTTCA

mRNA sequence

GGAAATATAAAATTGGGGGAAAATATTGGCTCGAAAGTCCAAACCAAAAACTATACTTGGCAGTAGGGCACAAAATCTCCAAAATCAAAGTCGGGAACCGCGGGTTTTGAAATGGGTTCTTATTTTCACCCAAAATTTTGAAAACCAGAAATATCCCCTTGTTCTTCAAAGTCCCAAATCCAGAAGAAAAAAAAAGTGTAAAACCGAGCCTTCACCAAACAGACCAACCCCACAAATTTCTTCTGAAAAAAACCCTCGTTTTCATTTTCGCCGAATTGATTCAGGTTCAAGAATGCCTTCCGAAGATCAAAAGCCGCTAAAGAAATCCAAAGCGGAGCTAGACGAAGCTGATGACGGAATATTCCTAGGCGCCCTTTTACAGAGGAAGAAACTCGCAAATGCGGGTTCTAAATCTGTGTCGAAGCCGAAGAAGGAAGAAGAAGACGGAGTGGGAAAGTCTCCGAAAATGGATTCTGGGTCTGCTTCCAAGAACACAAAGGTTAAGAAAGAAGAGCGTTTCAGCTCTGTCGATGGTGATTTTGACGAAAAGTCTACCAAAAAGAACTCTGCACCTAAGCGTGATATGGAACTGAAGAAGAAGAAGGTGAAGGAGGAGGAGAAGAGCAAAAGCTCCAAGGGGGAGCTGGAGAGCCAGAAAAAAGAGAGAAAGCAAAAGAAGGTATATGATTTGCCTGGTCAGAAGAGAGATCCCCCAGAAGAGAGAGACTCACTGAGGCTGTTTTATGAATCGCTCTACAAGCAAATTCCCCACAGTGAAATGGCGCAGTTTTGGATGATGGAGTCTGGTTTGTTATCCAAAGAACAAGCAAAGAAAGTTTTTGAAAAGAAGCAGAAGAAGACACCACTGCAAAAGTTGAGCTCCCCAGTTAAGACTGTGACTACCGCTGTGAAGAGTGCCACGAAAACTGCCATCGTCAAGAAAACTGTCCAATCTACTCCAGTTTCTTCGAATAAGAAGATGACTGCGGTCGACTCCAAAGTTGCAGCAAAACAGTCGAAGAAGCGCAAGTCCAAAGATGAAAGTTCAGAAGATGATTCAGATGATGATTTTATAATCAGTCGCAGCTTGAAGAAGAAACCAAGAGCAGCCTAATTAATGTGTAAATGGACAATCCTTTCTATTCAGAAGCTAATTTAAAATTTCTGATTAGTTGTTCTAAAACATTGAATTAACGTTATTAATGAGATAGAGACACCCCTTTGATCATGCTACTTACATTTATGTTATCTGATCTCTCTCTTTTTTCA

Coding sequence (CDS)

ATGCCTTCCGAAGATCAAAAGCCGCTAAAGAAATCCAAAGCGGAGCTAGACGAAGCTGATGACGGAATATTCCTAGGCGCCCTTTTACAGAGGAAGAAACTCGCAAATGCGGGTTCTAAATCTGTGTCGAAGCCGAAGAAGGAAGAAGAAGACGGAGTGGGAAAGTCTCCGAAAATGGATTCTGGGTCTGCTTCCAAGAACACAAAGGTTAAGAAAGAAGAGCGTTTCAGCTCTGTCGATGGTGATTTTGACGAAAAGTCTACCAAAAAGAACTCTGCACCTAAGCGTGATATGGAACTGAAGAAGAAGAAGGTGAAGGAGGAGGAGAAGAGCAAAAGCTCCAAGGGGGAGCTGGAGAGCCAGAAAAAAGAGAGAAAGCAAAAGAAGGTATATGATTTGCCTGGTCAGAAGAGAGATCCCCCAGAAGAGAGAGACTCACTGAGGCTGTTTTATGAATCGCTCTACAAGCAAATTCCCCACAGTGAAATGGCGCAGTTTTGGATGATGGAGTCTGGTTTGTTATCCAAAGAACAAGCAAAGAAAGTTTTTGAAAAGAAGCAGAAGAAGACACCACTGCAAAAGTTGAGCTCCCCAGTTAAGACTGTGACTACCGCTGTGAAGAGTGCCACGAAAACTGCCATCGTCAAGAAAACTGTCCAATCTACTCCAGTTTCTTCGAATAAGAAGATGACTGCGGTCGACTCCAAAGTTGCAGCAAAACAGTCGAAGAAGCGCAAGTCCAAAGATGAAAGTTCAGAAGATGATTCAGATGATGATTTTATAATCAGTCGCAGCTTGAAGAAGAAACCAAGAGCAGCCTAA

Protein sequence

MPSEDQKPLKKSKAELDEADDGIFLGALLQRKKLANAGSKSVSKPKKEEEDGVGKSPKMDSGSASKNTKVKKEERFSSVDGDFDEKSTKKNSAPKRDMELKKKKVKEEEKSKSSKGELESQKKERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWMMESGLLSKEQAKKVFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIVKKTVQSTPVSSNKKMTAVDSKVAAKQSKKRKSKDESSEDDSDDDFIISRSLKKKPRAA

Homology

[Close]

BLAST of Sed0006848 vs. NCBI nr
Match: KAG6608598.1 (hypothetical protein SDJN03_01940, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 368.2 bits (944), Expect = 6.0e-98
Identity = 222/278 (79.86%), Postives = 241/278 (86.69%), Query Frame = 0


Query: 1   MPSEDQKPLKKSKAELDEADDGIFLGALLQ--RKKLANAGSKSVSKPKKEE---EDGVGK 60
           M SEDQK +KK+K E+DEADDGI LGALLQ  RKKL N G KS+SKPKKEE   EDGVGK
Sbjct: 1   MSSEDQKLIKKTKVEVDEADDGISLGALLQEKRKKLQNVGPKSISKPKKEEVQGEDGVGK 60

Query: 61  SPKMDSGSASKNTKVKKEERFSSVDGDFDEKSTKKNSAPKRDMELKKKKVKEEEKSKSSK 120
           SP ++ GSASK TKVKKEERF+SVD DFDEK  KK+SA KRDMELKKKK   EEKSKS+K
Sbjct: 61  SPNINCGSASKGTKVKKEERFNSVDDDFDEKPAKKSSAAKRDMELKKKKKVNEEKSKSAK 120

Query: 121 GELESQKKERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWMMESGLLS 180
           GELESQKKE+K+KKVYDLPGQKRDPPEERD LR+FYE+L+KQ+PHSEMA+FWMMESGLLS
Sbjct: 121 GELESQKKEKKEKKVYDLPGQKRDPPEERDPLRIFYETLHKQVPHSEMAEFWMMESGLLS 180

Query: 181 KEQAKKVFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIVKKTVQSTPVSSNKKMTAVDS 240
           KE+AKKVFEKKQKK PLQKLSSP KTV TAVKS TKT IVKKTVQS PVSSNKK   V S
Sbjct: 181 KEEAKKVFEKKQKKAPLQKLSSPGKTV-TAVKSVTKTTIVKKTVQSPPVSSNKKTMTVGS 240

Query: 241 KVAAKQSKKRKSKDESSEDDSDDDFIISRSLKKKPRAA 274
           KV AKQS KR  KDESSED+SDDDFIISRS+KKKPRAA
Sbjct: 241 KVVAKQSTKRNLKDESSEDESDDDFIISRSMKKKPRAA 277

[Close]

BLAST of Sed0006848 vs. NCBI nr
Match: XP_022940536.1 (protein PXR1-like [Cucurbita moschata])

HSP 1 Score: 366.3 bits (939), Expect = 2.3e-97
Identity = 221/278 (79.50%), Postives = 240/278 (86.33%), Query Frame = 0


Query: 1   MPSEDQKPLKKSKAELDEADDGIFLGALLQ--RKKLANAGSKSVSKPKKEE---EDGVGK 60
           M SEDQK +KK+K E+DEADDGI LGALLQ  RKKL N G KS+SKPKKEE   EDGVGK
Sbjct: 1   MSSEDQKLIKKTKVEVDEADDGISLGALLQEKRKKLQNVGPKSISKPKKEEVQGEDGVGK 60

Query: 61  SPKMDSGSASKNTKVKKEERFSSVDGDFDEKSTKKNSAPKRDMELKKKKVKEEEKSKSSK 120
           SP ++ GSASK TKVKKEERF+SVD DFDEK  KK+SA KRDMELKKKK   EEKSKS+K
Sbjct: 61  SPNINCGSASKGTKVKKEERFNSVDDDFDEKPAKKSSAAKRDMELKKKKKVNEEKSKSAK 120

Query: 121 GELESQKKERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWMMESGLLS 180
           GELESQKKE+K+KKVYDLPGQKRDPPEERD LR+FYE+L+KQ+PHSEMA+FWMMESGLLS
Sbjct: 121 GELESQKKEKKEKKVYDLPGQKRDPPEERDPLRIFYETLHKQVPHSEMAEFWMMESGLLS 180

Query: 181 KEQAKKVFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIVKKTVQSTPVSSNKKMTAVDS 240
           KE+AKKVFEKKQKK PLQKLSSP KTVTT VKS TKT IVK TVQS PVSSNKK   V S
Sbjct: 181 KEEAKKVFEKKQKKAPLQKLSSPGKTVTT-VKSVTKTTIVKNTVQSPPVSSNKKTMTVGS 240

Query: 241 KVAAKQSKKRKSKDESSEDDSDDDFIISRSLKKKPRAA 274
           KV AKQS KR  KDESSED+SDDDFIISRS+KKKPRAA
Sbjct: 241 KVVAKQSTKRNLKDESSEDESDDDFIISRSMKKKPRAA 277

[Close]

BLAST of Sed0006848 vs. NCBI nr
Match: XP_023525196.1 (protein PXR1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.6 bits (932), Expect = 1.5e-96
Identity = 220/278 (79.14%), Postives = 239/278 (85.97%), Query Frame = 0


Query: 1   MPSEDQKPLKKSKAELDEADDGIFLGALLQ--RKKLANAGSKSVSKPKKEE---EDGVGK 60
           M SEDQK +KK+K E DEADDGI LGALLQ  RKKL N G KS+SKPKKEE   EDG GK
Sbjct: 1   MSSEDQKLIKKTKVEEDEADDGISLGALLQEKRKKLLNVGPKSISKPKKEEVQGEDGAGK 60

Query: 61  SPKMDSGSASKNTKVKKEERFSSVDGDFDEKSTKKNSAPKRDMELKKKKVKEEEKSKSSK 120
           SP ++ GSASK TKV+KEERF+SVD DFDEK  KK+SA KRDMELKKKK   EEKSKS+K
Sbjct: 61  SPNINCGSASKGTKVQKEERFNSVDDDFDEKPAKKSSAAKRDMELKKKKKVNEEKSKSAK 120

Query: 121 GELESQKKERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWMMESGLLS 180
           GELESQKKE+K+KKVYDLPGQKRDPPEERD LR+FYE+L+KQ+PHSEMA+FWMMESGLLS
Sbjct: 121 GELESQKKEKKEKKVYDLPGQKRDPPEERDPLRIFYETLHKQVPHSEMAEFWMMESGLLS 180

Query: 181 KEQAKKVFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIVKKTVQSTPVSSNKKMTAVDS 240
           KE+AKKVFEKKQKK PLQKLSSP KTV TAVKS TKT IVKKTVQS PVSSNKK   V S
Sbjct: 181 KEEAKKVFEKKQKKAPLQKLSSPGKTV-TAVKSVTKTTIVKKTVQSPPVSSNKKTMTVGS 240

Query: 241 KVAAKQSKKRKSKDESSEDDSDDDFIISRSLKKKPRAA 274
           KV AKQS KR  KDESSED+SDDDFIISRS+KKKPRAA
Sbjct: 241 KVVAKQSTKRNLKDESSEDESDDDFIISRSMKKKPRAA 277

[Close]

BLAST of Sed0006848 vs. NCBI nr
Match: XP_022982324.1 (protein PXR1-like [Cucurbita maxima])

HSP 1 Score: 361.3 bits (926), Expect = 7.3e-96
Identity = 218/278 (78.42%), Postives = 239/278 (85.97%), Query Frame = 0


Query: 1   MPSEDQKPLKKSKAELDEADDGIFLGALLQ--RKKLANAGSKSVSKPKKEE---EDGVGK 60
           M SEDQK +KK+K E+D+ADDGI LG LLQ  RKKL N G KS+SKPKKEE   EDGVGK
Sbjct: 1   MSSEDQKLIKKTKVEVDDADDGISLGTLLQEKRKKLLNVGPKSISKPKKEEVQGEDGVGK 60

Query: 61  SPKMDSGSASKNTKVKKEERFSSVDGDFDEKSTKKNSAPKRDMELKKKKVKEEEKSKSSK 120
           SP ++  SASK TKVKKEERF+SVD DFDEK  KK+SA KRDMELKKKK   EEKSKS+K
Sbjct: 61  SPNINCRSASKGTKVKKEERFNSVDDDFDEKPAKKSSAAKRDMELKKKKKVNEEKSKSAK 120

Query: 121 GELESQKKERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWMMESGLLS 180
           GELESQKKE+K+KKVYDLPGQKRDPPEERD LR+FYE+L+KQ+PHSEMA+FWMMESGLLS
Sbjct: 121 GELESQKKEKKEKKVYDLPGQKRDPPEERDPLRIFYETLHKQVPHSEMAEFWMMESGLLS 180

Query: 181 KEQAKKVFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIVKKTVQSTPVSSNKKMTAVDS 240
           KE+AKKVF+KKQKK PLQKLSSP KTV TAVKS TKT IVKKTVQS PVSSNKK   V S
Sbjct: 181 KEEAKKVFDKKQKKAPLQKLSSPGKTV-TAVKSVTKTTIVKKTVQSPPVSSNKKTMTVGS 240

Query: 241 KVAAKQSKKRKSKDESSEDDSDDDFIISRSLKKKPRAA 274
           KV AKQS KR  KDESSED+SDDDFIISRS+KKKPRAA
Sbjct: 241 KVVAKQSTKRNLKDESSEDESDDDFIISRSMKKKPRAA 277

[Close]

BLAST of Sed0006848 vs. NCBI nr
Match: XP_022145662.1 (transcriptional regulator ATRX homolog [Momordica charantia])

HSP 1 Score: 356.7 bits (914), Expect = 1.8e-94
Identity = 218/279 (78.14%), Postives = 243/279 (87.10%), Query Frame = 0


Query: 1   MPSEDQKPLKKSKAELDEADDGIFLGALLQ--RKKLANAGSKSVSKPKKEE---EDGVGK 60
           M SEDQKP+KKSK ELDE +DG+ LG++ Q  +KKL+N GSK +S  KKEE   EDGVGK
Sbjct: 1   MSSEDQKPIKKSKVELDEMEDGMSLGSIFQAKKKKLSNGGSKPLSNLKKEELQGEDGVGK 60

Query: 61  SPKMDSGSASKNTKVKKEERFSSVDGDFDEKSTKKNSAPKRDME-LKKKKVKEEEKSKSS 120
           SPKM SGS  K TKVKKEERF+S D D+DE  +KK+SA KRDME  KKKKVKEEEKSK+S
Sbjct: 61  SPKMGSGSVPKGTKVKKEERFNSSDDDYDETPSKKSSAAKRDMEPKKKKKVKEEEKSKTS 120

Query: 121 KGELESQKKERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWMMESGLL 180
           K + ESQKKER++KKVYDLPGQKRDPPEERD LR+FYE+L+KQ+PHSEMAQFWMMESGLL
Sbjct: 121 KAKQESQKKERREKKVYDLPGQKRDPPEERDPLRIFYETLHKQLPHSEMAQFWMMESGLL 180

Query: 181 SKEQAKKVFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIVKKTVQSTPVSSNKKMTAVD 240
           SKE+AKKVFEKKQKK PLQKLSSPVK V TAVKS TKTAIVKKTVQS+P+SSNKK T VD
Sbjct: 181 SKEEAKKVFEKKQKKAPLQKLSSPVKAV-TAVKSVTKTAIVKKTVQSSPLSSNKK-TTVD 240

Query: 241 SKVAAKQSKKRKSKDESSEDDSDDDFIISRSLKKKPRAA 274
           SKV  KQSKKRKSKDESSED+SDDDFIISRS+KKKPRAA
Sbjct: 241 SKVMTKQSKKRKSKDESSEDESDDDFIISRSVKKKPRAA 277

[Close]

BLAST of Sed0006848 vs. ExPASy TrEMBL
Match: A0A6J1FIR2 (protein PXR1-like OS=Cucurbita moschata OX=3662 GN=LOC111446106 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 1.1e-97
Identity = 221/278 (79.50%), Postives = 240/278 (86.33%), Query Frame = 0


Query: 1   MPSEDQKPLKKSKAELDEADDGIFLGALLQ--RKKLANAGSKSVSKPKKEE---EDGVGK 60
           M SEDQK +KK+K E+DEADDGI LGALLQ  RKKL N G KS+SKPKKEE   EDGVGK
Sbjct: 1   MSSEDQKLIKKTKVEVDEADDGISLGALLQEKRKKLQNVGPKSISKPKKEEVQGEDGVGK 60

Query: 61  SPKMDSGSASKNTKVKKEERFSSVDGDFDEKSTKKNSAPKRDMELKKKKVKEEEKSKSSK 120
           SP ++ GSASK TKVKKEERF+SVD DFDEK  KK+SA KRDMELKKKK   EEKSKS+K
Sbjct: 61  SPNINCGSASKGTKVKKEERFNSVDDDFDEKPAKKSSAAKRDMELKKKKKVNEEKSKSAK 120

Query: 121 GELESQKKERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWMMESGLLS 180
           GELESQKKE+K+KKVYDLPGQKRDPPEERD LR+FYE+L+KQ+PHSEMA+FWMMESGLLS
Sbjct: 121 GELESQKKEKKEKKVYDLPGQKRDPPEERDPLRIFYETLHKQVPHSEMAEFWMMESGLLS 180

Query: 181 KEQAKKVFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIVKKTVQSTPVSSNKKMTAVDS 240
           KE+AKKVFEKKQKK PLQKLSSP KTVTT VKS TKT IVK TVQS PVSSNKK   V S
Sbjct: 181 KEEAKKVFEKKQKKAPLQKLSSPGKTVTT-VKSVTKTTIVKNTVQSPPVSSNKKTMTVGS 240

Query: 241 KVAAKQSKKRKSKDESSEDDSDDDFIISRSLKKKPRAA 274
           KV AKQS KR  KDESSED+SDDDFIISRS+KKKPRAA
Sbjct: 241 KVVAKQSTKRNLKDESSEDESDDDFIISRSMKKKPRAA 277

[Close]

BLAST of Sed0006848 vs. ExPASy TrEMBL
Match: A0A6J1J474 (protein PXR1-like OS=Cucurbita maxima OX=3661 GN=LOC111481191 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 3.5e-96
Identity = 218/278 (78.42%), Postives = 239/278 (85.97%), Query Frame = 0


Query: 1   MPSEDQKPLKKSKAELDEADDGIFLGALLQ--RKKLANAGSKSVSKPKKEE---EDGVGK 60
           M SEDQK +KK+K E+D+ADDGI LG LLQ  RKKL N G KS+SKPKKEE   EDGVGK
Sbjct: 1   MSSEDQKLIKKTKVEVDDADDGISLGTLLQEKRKKLLNVGPKSISKPKKEEVQGEDGVGK 60

Query: 61  SPKMDSGSASKNTKVKKEERFSSVDGDFDEKSTKKNSAPKRDMELKKKKVKEEEKSKSSK 120
           SP ++  SASK TKVKKEERF+SVD DFDEK  KK+SA KRDMELKKKK   EEKSKS+K
Sbjct: 61  SPNINCRSASKGTKVKKEERFNSVDDDFDEKPAKKSSAAKRDMELKKKKKVNEEKSKSAK 120

Query: 121 GELESQKKERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWMMESGLLS 180
           GELESQKKE+K+KKVYDLPGQKRDPPEERD LR+FYE+L+KQ+PHSEMA+FWMMESGLLS
Sbjct: 121 GELESQKKEKKEKKVYDLPGQKRDPPEERDPLRIFYETLHKQVPHSEMAEFWMMESGLLS 180

Query: 181 KEQAKKVFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIVKKTVQSTPVSSNKKMTAVDS 240
           KE+AKKVF+KKQKK PLQKLSSP KTV TAVKS TKT IVKKTVQS PVSSNKK   V S
Sbjct: 181 KEEAKKVFDKKQKKAPLQKLSSPGKTV-TAVKSVTKTTIVKKTVQSPPVSSNKKTMTVGS 240

Query: 241 KVAAKQSKKRKSKDESSEDDSDDDFIISRSLKKKPRAA 274
           KV AKQS KR  KDESSED+SDDDFIISRS+KKKPRAA
Sbjct: 241 KVVAKQSTKRNLKDESSEDESDDDFIISRSMKKKPRAA 277

[Close]

BLAST of Sed0006848 vs. ExPASy TrEMBL
Match: A0A6J1CXC1 (transcriptional regulator ATRX homolog OS=Momordica charantia OX=3673 GN=LOC111015025 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 8.7e-95
Identity = 218/279 (78.14%), Postives = 243/279 (87.10%), Query Frame = 0


Query: 1   MPSEDQKPLKKSKAELDEADDGIFLGALLQ--RKKLANAGSKSVSKPKKEE---EDGVGK 60
           M SEDQKP+KKSK ELDE +DG+ LG++ Q  +KKL+N GSK +S  KKEE   EDGVGK
Sbjct: 1   MSSEDQKPIKKSKVELDEMEDGMSLGSIFQAKKKKLSNGGSKPLSNLKKEELQGEDGVGK 60

Query: 61  SPKMDSGSASKNTKVKKEERFSSVDGDFDEKSTKKNSAPKRDME-LKKKKVKEEEKSKSS 120
           SPKM SGS  K TKVKKEERF+S D D+DE  +KK+SA KRDME  KKKKVKEEEKSK+S
Sbjct: 61  SPKMGSGSVPKGTKVKKEERFNSSDDDYDETPSKKSSAAKRDMEPKKKKKVKEEEKSKTS 120

Query: 121 KGELESQKKERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWMMESGLL 180
           K + ESQKKER++KKVYDLPGQKRDPPEERD LR+FYE+L+KQ+PHSEMAQFWMMESGLL
Sbjct: 121 KAKQESQKKERREKKVYDLPGQKRDPPEERDPLRIFYETLHKQLPHSEMAQFWMMESGLL 180

Query: 181 SKEQAKKVFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIVKKTVQSTPVSSNKKMTAVD 240
           SKE+AKKVFEKKQKK PLQKLSSPVK V TAVKS TKTAIVKKTVQS+P+SSNKK T VD
Sbjct: 181 SKEEAKKVFEKKQKKAPLQKLSSPVKAV-TAVKSVTKTAIVKKTVQSSPLSSNKK-TTVD 240

Query: 241 SKVAAKQSKKRKSKDESSEDDSDDDFIISRSLKKKPRAA 274
           SKV  KQSKKRKSKDESSED+SDDDFIISRS+KKKPRAA
Sbjct: 241 SKVMTKQSKKRKSKDESSEDESDDDFIISRSVKKKPRAA 277

[Close]

BLAST of Sed0006848 vs. ExPASy TrEMBL
Match: A0A5D3E5S8 (Golgin subfamily A member 6-like protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008030 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 7.4e-94
Identity = 219/279 (78.49%), Postives = 245/279 (87.81%), Query Frame = 0


Query: 1   MPSEDQKPLKKSKAELDEADDGIFLGALLQ--RKKLANAGSKSVSKPKKEE---EDGVGK 60
           M S+DQKPLKK+K ELD++DDG+ LGALLQ  RKKL N GSK +SKPKKEE    DG+GK
Sbjct: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELLGVDGLGK 60

Query: 61  SPKMDSGSASKNTKVKKEERFSSVDGDFDEKSTKKNSAPKRDMEL-KKKKVKEEEKSKSS 120
           SPK+DSGSA K +KVKKEERF+SV+ DFDEK  KK+SA KRD EL KKKKVKEEEKSKSS
Sbjct: 61  SPKIDSGSAPKGSKVKKEERFNSVNDDFDEKPAKKSSAAKRDTELKKKKKVKEEEKSKSS 120

Query: 121 KGELESQKKERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWMMESGLL 180
           K ELES KKERKQKKVYDLPGQKRDPPEERD LR+FYESL+KQ+PHSEMAQFWMMESGLL
Sbjct: 121 K-ELESLKKERKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMESGLL 180

Query: 181 SKEQAKKVFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIVKKTVQSTPVSSNKKMTAVD 240
           SKE+AK+VFEKKQKK PLQKLSSP+KTV +AVKS TKTA+VKKTVQS+P+SSN + T VD
Sbjct: 181 SKEEAKEVFEKKQKKAPLQKLSSPMKTV-SAVKSVTKTAVVKKTVQSSPLSSN-RTTKVD 240

Query: 241 SKVAAKQSKKRKSKDESSEDDSDDDFIISRSLKKKPRAA 274
           SKV  K SKKRKSKD+SSEDDSDDDF IS+S+KKK RAA
Sbjct: 241 SKVVMKSSKKRKSKDDSSEDDSDDDFFISQSIKKKARAA 276

[Close]

BLAST of Sed0006848 vs. ExPASy TrEMBL
Match: A0A1S3CRI7 (uncharacterized protein LOC103503875 OS=Cucumis melo OX=3656 GN=LOC103503875 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 7.4e-94
Identity = 219/279 (78.49%), Postives = 245/279 (87.81%), Query Frame = 0


Query: 1   MPSEDQKPLKKSKAELDEADDGIFLGALLQ--RKKLANAGSKSVSKPKKEE---EDGVGK 60
           M S+DQKPLKK+K ELD++DDG+ LGALLQ  RKKL N GSK +SKPKKEE    DG+GK
Sbjct: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELLGVDGLGK 60

Query: 61  SPKMDSGSASKNTKVKKEERFSSVDGDFDEKSTKKNSAPKRDMEL-KKKKVKEEEKSKSS 120
           SPK+DSGSA K +KVKKEERF+SV+ DFDEK  KK+SA KRD EL KKKKVKEEEKSKSS
Sbjct: 61  SPKIDSGSAPKGSKVKKEERFNSVNDDFDEKPAKKSSAAKRDTELKKKKKVKEEEKSKSS 120

Query: 121 KGELESQKKERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWMMESGLL 180
           K ELES KKERKQKKVYDLPGQKRDPPEERD LR+FYESL+KQ+PHSEMAQFWMMESGLL
Sbjct: 121 K-ELESLKKERKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMESGLL 180

Query: 181 SKEQAKKVFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIVKKTVQSTPVSSNKKMTAVD 240
           SKE+AK+VFEKKQKK PLQKLSSP+KTV +AVKS TKTA+VKKTVQS+P+SSN + T VD
Sbjct: 181 SKEEAKEVFEKKQKKAPLQKLSSPMKTV-SAVKSVTKTAVVKKTVQSSPLSSN-RTTKVD 240

Query: 241 SKVAAKQSKKRKSKDESSEDDSDDDFIISRSLKKKPRAA 274
           SKV  K SKKRKSKD+SSEDDSDDDF IS+S+KKK RAA
Sbjct: 241 SKVVMKSSKKRKSKDDSSEDDSDDDFFISQSIKKKARAA 276

[Close]

BLAST of Sed0006848 vs. TAIR 10
Match: AT1G19990.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192 proteins in 541 species: Archae - 6; Bacteria - 629; Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes - 4392 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-30
Identity = 122/274 (44.53%), Postives = 162/274 (59.12%), Query Frame = 0


Query: 2   PSEDQKPLKKSKAELDEADDGIFLGALLQRKKLANAGSKSVSKPKKEEEDGVGKSPKMDS 61
           PSED K + K K E +E +  +   A  +     NAGSK + K + +++D   K P   S
Sbjct: 3   PSEDVKAM-KMKEEAEEDNKSLSSFAKKKPTNGNNAGSKKLKKEENDDDDDDNK-PIKSS 62

Query: 62  GSASKNTKVKKEERFSSVDGDFDEKSTKKNSAPKRDMELKKKKVKEEEKSKSSKGELESQ 121
            S S+   VKK+E    +D D ++K   K ++     +  KK  KEEE            
Sbjct: 63  VSGSRAKPVKKKE---EIDKDDEKKPVSKRNSSVGVSKENKKPEKEEE------------ 122

Query: 122 KKERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWMMESGLLSKEQAKK 181
            K+++++KVYDLPGQKR+ P+ERD LR+FYESLYKQIP S+MAQ W+MESGLL  E+AKK
Sbjct: 123 VKKKRERKVYDLPGQKREQPDERDPLRIFYESLYKQIPTSDMAQIWLMESGLLPAEKAKK 182

Query: 182 VFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIV-KKTVQSTP--VSSNKKMTAVDSKVA 241
           V EKK +K    KLSSPVK+  +  +S +K+  V KK VQ +P    SNKK    DSK  
Sbjct: 183 VLEKKLQKG--GKLSSPVKSAASTPRSNSKSVTVKKKEVQKSPSEALSNKK-KGNDSKPT 242

Query: 242 AKQSKKRKSKDESSEDDSDDDFIISRSLKKKPRA 273
            K+ KK      S +DDSDDDF+ SR + KK RA
Sbjct: 243 TKKRKK-----NSDDDDSDDDFLASR-VSKKARA 250

[Close]

BLAST of Sed0006848 vs. TAIR 10
Match: AT5G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 95.5 bits (236), Expect = 7.0e-20
Identity = 69/160 (43.12%), Postives = 96/160 (60.00%), Query Frame = 0


Query: 110 KSKSSKGELESQK-KERKQKKVYDLPGQKRDPPEERDSLRLFYESLYKQIPHSEMAQFWM 169
           K+K++   +   K K +++KKVY L GQK DPPEER+ LR+FYESL KQIP SEMA+FW+
Sbjct: 100 KAKTTSATVSLVKGKAKREKKVYSLAGQKFDPPEEREPLRIFYESLSKQIPGSEMAEFWL 159

Query: 170 MESGLLSKEQAKKVFEKKQKKTPLQKLSSPVKTVTTAVKSATKTAIVKKTVQSTPVSSNK 229
           ME G+LS E+AK+ FEKKQ+K    ++ +P K+  T    A       ++ Q T  S N 
Sbjct: 160 MEHGMLSPEKAKRAFEKKQRKMKQIRMGTPSKSAPTFSSKA-------ESSQRTSASKNN 219

Query: 230 KMTAVDSKVAAKQSKKRKSKDESSEDDSDDDFIISRSLKK 269
            + A           ++K K    +DD DDDFI+S   +K
Sbjct: 220 GLDA-----------RKKKKVVDDDDDDDDDFILSHKRRK 241

The following BLAST results are available for this feature:

BLAST of Sed0006848 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608598.1	6.0e-98	79.86	hypothetical protein SDJN03_01940, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022940536.1	2.3e-97	79.50	protein PXR1-like [Cucurbita moschata]	[more]
XP_023525196.1	1.5e-96	79.14	protein PXR1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022982324.1	7.3e-96	78.42	protein PXR1-like [Cucurbita maxima]	[more]
XP_022145662.1	1.8e-94	78.14	transcriptional regulator ATRX homolog [Momordica charantia]	[more]

BLAST of Sed0006848 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006848 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIR2	1.1e-97	79.50	protein PXR1-like OS=Cucurbita moschata OX=3662 GN=LOC111446106 PE=4 SV=1	[more]
A0A6J1J474	3.5e-96	78.42	protein PXR1-like OS=Cucurbita maxima OX=3661 GN=LOC111481191 PE=4 SV=1	[more]
A0A6J1CXC1	8.7e-95	78.14	transcriptional regulator ATRX homolog OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5D3E5S8	7.4e-94	78.49	Golgin subfamily A member 6-like protein 22 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CRI7	7.4e-94	78.49	uncharacterized protein LOC103503875 OS=Cucumis melo OX=3656 GN=LOC103503875 PE=...	[more]

BLAST of Sed0006848 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19990.1	1.1e-30	44.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G11600.1	7.0e-20	43.13	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..273
None	No IPR available	PANTHER	PTHR33828:SF2	NUCLEOLIN	coord: 1..272
None	No IPR available	PANTHER	PTHR33828	OS05G0596200 PROTEIN	coord: 1..272

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006848.1	Sed0006848.1	mRNA