Sed0006725 (gene) Chayote v1

Overview


Name	Sed0006725
Type	gene
Organism	Sechium edule (Chayote v1)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	LG06: 10128334 .. 10131293 (+)
RNA-Seq Expression	Sed0006725
Synteny	Sed0006725

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCGAATTAATTTACAAAAACTTCATTCAGAAAACCATCTTTCTTTTCAATTCCCATTTCTCATAAAAGCTCTCTTTTATCATCTCATTACTTATCTTCCAATGGGACGTTGGATGAAACCAGAGGTTAGCCCCAAAAAATTTCTCTTCTATTCACCACTAGTATTTCTTTTTTATATGAAATATTGTTTTCTCATTTTTACTCTTTTCTTTTATGTTTATTATGTTCTCCTATAACTCAACTCTGTTTTTTTATTGATAAAATAGCCCATCATCCTCAAAAATTTTAATTAATTATTGTACTTTTTTATAATATATTTTATTTATAGTTAATTTTTGTCTTTTTTCATATTTTCGAATTGTTCTTCTTAATCTTACTTGTTTTCAATCAAATATCAAATGAATTGTTTTAATTACTTGAACGGATTATTTTCAATTAGTTGAATTATTATATCCAACCAATTTATTTGATTTTAAGTGTGAACATTTTAATCATTTTATTAAGATCTTTCCATTTTTCTACTACAAATCAATAGTATTGCAAAGTCTTGCTATTCATAAACTTTTTTTGCATGAAAAAATCTGATAAATTAATCATTTATATACATGTGCTTTGATAATTATATTGTATCTTCAGATGTGGGTGAGAAATTATAAATGAAAAATGAGAAATTATAGATACAAAAAATATTTTAACCATAGAAGAAGTCTACTTCCAAAAAAAAGGCCATTTTTTTTACCATAGATTAATCTCCATGCTCTAAACTTGATAGAGTTGAATTTGACCTAAGAACTTGGGAAGGCGTATCACAAAAATATTTTACTTTAATGTTTAAATCAAAAAAATATTTTACTTTCAAAATTTAAAATTTTTGTATCTCGTAATTGGATATATATATATATATAGTCAAAGTATATTATAATCTTTGCTTTAAAACTTTGACTATTTATTACAAACCTTTACTTTTATATAGGTTTTTATTTTAAAAATCGCCAATACAAATATGATGTATATTTAATAGAGCTTTTCATACTACAAATTGAGAGAGGAGGGTATTATTCTTCTTAAATAAATAAAGTCAAATACTAGTTTTCAAGATCGAATATGTGATTATAATGTTGAAATGAATTAGGACCAAATAGTGAAATCAATATGCCACTTTTGAGTAATAAATTTTCTTTTCATCAATAACAAAAAAGGAAAGATTTCGTGGATGTCAAAATTTTAGAAAAAATTTAAATATAGAAAAAGCTAGTACAATATTAAATTGATAGCTTCAATTAATTCTACCAAACTAATGACCTCAATTTGACGGTTTCAATATTAAATTTATTAAAAATAATAAAGTAAAATTAATTTAAAATAAATAAAGTTGAAATATCTGAACGCATTTAATTTTTTTTTTTAAATTACAATAATTAAAATTAAAATTAGGATATGTTATCAACCAGAAATTTTTTTTTATTAATAAAGGTTAAATGAGCATGTCACATAAACACAATTAATAAAATTCTAAAGAAAATAATTGAGATTTTATGTGCTTTAGAATGAAGCTTAATTTTGAACACTAACTAACAAGATCAATAGCTCAAGGATTATATTAAGATTTGAGGACAATATTTATTCAAACATTTTATAAAAGTTGAAATACATGTAATTTTTTTGTTGTACAACGATATTTGGAGCTCGAATAGAGACCAACTAATTTACAATGTTAGTAGATTCCTACTCTTTTTCACTCATATATGTTAAATTTAGGGTAAAAGATATGAAGTTGAAAGATTAAAGTAATTTGGGGTAAAAGATGAAAGTAAAATTAATTATAAAAATGGATTAATGAGATTATTTTTACATAAAAATGGTATAAATTGCAGGTTTATCCGCTAGTGGCGGCCATGGGATTCGTGACATCTATGTGCGTATTTCAACTCTCCCGAAACATTCTCCTAAACCCTGACGTCAGGTACCTCCCGTTTCATTTTTATGTAACACTATTTTATAAACCTGCATATTTTATAATTACTAAACTACGATATCCAAAATGTCACTAATCCTTCTTCACACCTACCTCCCATTTTTTTTTTGTTTGATTATTTTTAGAGTTTTTTTTTCTTTTTTTTTTTTCTTTAAGTTTATAATATTTTTTTATGATTCAACCATCCTGGGGTAAATCATCAAAACCACCCACCTATAAATCTTAATTTGTATGCTACTTTTTTTTACTTATCTTTGTCCATATAACTGATTTTTTTAATACATATTAGAGAAGGAAAAATATAACTAAATTATTGGCTCAGAATGAATTATACTCAAATATAAGGATGATTATAATAAGAATAAACTGCAAAGATAATTAAAAAGTAATAATAATAACATACAGATTAGGATTTATAGGTGGGTGGCTTTGATGATTCACCCCACAGTTGTTTTTTTATTTATTTTTTTGTCATGCAAAAATATTGATTCTCAGAATCGAACTTTCATACTGGTATTGAATTAGTTTATTATCAAACAATCAAATCATTGAGACACTGACCCATTCGATATTTATCGCACGTTTGTTGAACGATAAAAAATTATTATTTTGATAATTATATGAATTTAATGTTGCAGGGTGAATAAAGCCCACCGTAAAATGGCAGTATTAGAAAACGAAGAGGAAGGCGAGAAGTACGCGGAGCACAGCCTCCGGCGGTTCCTCCGAACCCGGCCGCCCCAAATCATGCCTACTATTAATCGCTTTTTTTCCCAAGACAAAGAAAATTAATTTCATACCACATTTTCCTTCATAATTATTATTTTTTTATTATCCGCCTTTTTTTTAAAATTTTAAAATTTTTAATTGCCACACCACTTTGTTTGTCTTAAATTACGTCCATTATAAATAAGCCTTTGTTTAATAAGATGCTTCCTTTTTCATTCAATGAGTGTTTATAAATTCATTGTGCAATTGACTTTA

mRNA sequence

CAGCGAATTAATTTACAAAAACTTCATTCAGAAAACCATCTTTCTTTTCAATTCCCATTTCTCATAAAAGCTCTCTTTTATCATCTCATTACTTATCTTCCAATGGGACGTTGGATGAAACCAGAGGTTTATCCGCTAGTGGCGGCCATGGGATTCGTGACATCTATGTGCGTATTTCAACTCTCCCGAAACATTCTCCTAAACCCTGACGTCAGGGTGAATAAAGCCCACCGTAAAATGGCAGTATTAGAAAACGAAGAGGAAGGCGAGAAGTACGCGGAGCACAGCCTCCGGCGGTTCCTCCGAACCCGGCCGCCCCAAATCATGCCTACTATTAATCGCTTTTTTTCCCAAGACAAAGAAAATTAATTTCATACCACATTTTCCTTCATAATTATTATTTTTTTATTATCCGCCTTTTTTTTAAAATTTTAAAATTTTTAATTGCCACACCACTTTGTTTGTCTTAAATTACGTCCATTATAAATAAGCCTTTGTTTAATAAGATGCTTCCTTTTTCATTCAATGAGTGTTTATAAATTCATTGTGCAATTGACTTTA

Coding sequence (CDS)

ATGGGACGTTGGATGAAACCAGAGGTTTATCCGCTAGTGGCGGCCATGGGATTCGTGACATCTATGTGCGTATTTCAACTCTCCCGAAACATTCTCCTAAACCCTGACGTCAGGGTGAATAAAGCCCACCGTAAAATGGCAGTATTAGAAAACGAAGAGGAAGGCGAGAAGTACGCGGAGCACAGCCTCCGGCGGTTCCTCCGAACCCGGCCGCCCCAAATCATGCCTACTATTAATCGCTTTTTTTCCCAAGACAAAGAAAATTAA

Protein sequence

MGRWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAEHSLRRFLRTRPPQIMPTINRFFSQDKEN

Homology

[Close]

BLAST of Sed0006725 vs. NCBI nr
Match: XP_008464582.1 (PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 78/86 (90.70%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MGRWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAE 60
          MGRWMKPEVYPL+AAMGFVTSMCVFQL+RNIL+NPDVRVNKAHR+M VLENEEEGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPQIMPTINRFFSQDK 87
          HSLRRFLRTRPP+IMPTINR+FSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86

[Close]

BLAST of Sed0006725 vs. NCBI nr
Match: XP_038883437.1 (uncharacterized protein LOC120074394 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 4.2e-37
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGRWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAE 60
          MGRW+KPEVYPL+AAMGFVTSMCVFQL+RNI++NPDVRVNKAHRKM VLENEEEGEKY+E
Sbjct: 1  MGRWIKPEVYPLLAAMGFVTSMCVFQLTRNIMINPDVRVNKAHRKMGVLENEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPQIMPTINRFFSQDK 87
          HSLRRFLRTRPP+IMP IN FFSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPNINHFFSQDK 86

[Close]

BLAST of Sed0006725 vs. NCBI nr
Match: XP_022980760.1 (uncharacterized protein LOC111480034 [Cucurbita maxima])

HSP 1 Score: 163.7 bits (413), Expect = 7.2e-37
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGRWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAE 60
          M RW+KPEVYPL+AAMGFVT+MCVFQL+RNIL+NPDVRVNK HR+M VLENEEEGEKYAE
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPQIMPTINRFFSQDK 87
          HSLRRFLRTRPP+IMPTINRFFSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 86

[Close]

BLAST of Sed0006725 vs. NCBI nr
Match: XP_022955974.1 (uncharacterized protein LOC111457808 [Cucurbita moschata])

HSP 1 Score: 160.6 bits (405), Expect = 6.1e-36
Identity = 74/86 (86.05%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MGRWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAE 60
          M RW+KPEVYPL+AAMGFVT++CVFQL+RNIL+NPDVRVNK HR+M VLENEEEGEKYAE
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTLCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPQIMPTINRFFSQDK 87
          HSLRRFLRTRPP+IMP INRFFSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPAINRFFSQDK 86

[Close]

BLAST of Sed0006725 vs. NCBI nr
Match: XP_022155075.1 (uncharacterized protein LOC111022208 [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 76/86 (88.37%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MGRWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAE 60
          MGRWMKPEVYPL+AAMGFVTSMCVFQL+RNILLNPDVRVNK  R M VLEN EEGEKYAE
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAE 60

Query: 61 HSLRRFLRTRPPQIMPTINRFFSQDK 87
          H LRRFLRTRPP+IMPTIN FFSQDK
Sbjct: 61 HRLRRFLRTRPPEIMPTINHFFSQDK 86

[Close]

BLAST of Sed0006725 vs. ExPASy TrEMBL
Match: A0A1S3CLU5 (uncharacterized protein LOC103502424 OS=Cucumis melo OX=3656 GN=LOC103502424 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 78/86 (90.70%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MGRWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAE 60
          MGRWMKPEVYPL+AAMGFVTSMCVFQL+RNIL+NPDVRVNKAHR+M VLENEEEGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPQIMPTINRFFSQDK 87
          HSLRRFLRTRPP+IMPTINR+FSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86

[Close]

BLAST of Sed0006725 vs. ExPASy TrEMBL
Match: A0A6J1IXF3 (uncharacterized protein LOC111480034 OS=Cucurbita maxima OX=3661 GN=LOC111480034 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGRWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAE 60
          M RW+KPEVYPL+AAMGFVT+MCVFQL+RNIL+NPDVRVNK HR+M VLENEEEGEKYAE
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPQIMPTINRFFSQDK 87
          HSLRRFLRTRPP+IMPTINRFFSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 86

[Close]

BLAST of Sed0006725 vs. ExPASy TrEMBL
Match: A0A6J1GXR5 (uncharacterized protein LOC111457808 OS=Cucurbita moschata OX=3662 GN=LOC111457808 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.0e-36
Identity = 74/86 (86.05%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MGRWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAE 60
          M RW+KPEVYPL+AAMGFVT++CVFQL+RNIL+NPDVRVNK HR+M VLENEEEGEKYAE
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTLCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPQIMPTINRFFSQDK 87
          HSLRRFLRTRPP+IMP INRFFSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPAINRFFSQDK 86

[Close]

BLAST of Sed0006725 vs. ExPASy TrEMBL
Match: A0A6J1DLE5 (uncharacterized protein LOC111022208 OS=Momordica charantia OX=3673 GN=LOC111022208 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.6e-36
Identity = 76/86 (88.37%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MGRWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAE 60
          MGRWMKPEVYPL+AAMGFVTSMCVFQL+RNILLNPDVRVNK  R M VLEN EEGEKYAE
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAE 60

Query: 61 HSLRRFLRTRPPQIMPTINRFFSQDK 87
          H LRRFLRTRPP+IMPTIN FFSQDK
Sbjct: 61 HRLRRFLRTRPPEIMPTINHFFSQDK 86

[Close]

BLAST of Sed0006725 vs. ExPASy TrEMBL
Match: A0A067JNC6 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25584 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.9e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1  MGRWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAE 60
          MGRWMKPEVYPL+AAM FVTSMCVFQL+RN+ LNPDVR+NKAHR+MAVLENE+EGEKYAE
Sbjct: 1  MGRWMKPEVYPLLAAMTFVTSMCVFQLTRNVFLNPDVRINKAHRRMAVLENEDEGEKYAE 60

Query: 61 HSLRRFLRTRPPQIMPTINRFFSQDK 87
          H LR+FLRTRPP++MP IN FFSQD+
Sbjct: 61 HGLRKFLRTRPPEVMPAINHFFSQDE 86

[Close]

BLAST of Sed0006725 vs. TAIR 10
Match: AT3G29970.1 (B12D protein )

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-33
Identity = 60/85 (70.59%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MGRWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAE 60
          MGRW++PEVYPL+ AMGFVTSM VFQL+RN  LNPD R+NK HRKM +LEN++EGEKYA+
Sbjct: 1  MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query: 61 HSLRRFLRTRPPQIMPTINRFFSQD 86
          H+ R++LRTR PQ+MP++NRFFSQ+
Sbjct: 61 HNFRKYLRTRQPQVMPSLNRFFSQE 85

[Close]

BLAST of Sed0006725 vs. TAIR 10
Match: AT3G48140.1 (B12D protein )

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-20
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 3  RWMKPEVYPLVAAMGFVTSMCVFQLSRNILLNPDVRVNKAHRKMAVLENEEEGEKYAEHS 62
          RW++PEVYPL AA G    +C F L RNI  NP+VR  K +R   +L+N  EGEKY E+ 
Sbjct: 4  RWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENF 63

Query: 63 LRRFLRTRPPQIMPTINRFFS 84
          LR+F+R + P+IMP +N+FF+
Sbjct: 64 LRKFVRNKKPEIMPGLNKFFT 84

The following BLAST results are available for this feature:

BLAST of Sed0006725 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464582.1	2.9e-38	90.70	PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo]	[more]
XP_038883437.1	4.2e-37	88.37	uncharacterized protein LOC120074394 [Benincasa hispida]	[more]
XP_022980760.1	7.2e-37	88.37	uncharacterized protein LOC111480034 [Cucurbita maxima]	[more]
XP_022955974.1	6.1e-36	86.05	uncharacterized protein LOC111457808 [Cucurbita moschata]	[more]
XP_022155075.1	1.4e-35	88.37	uncharacterized protein LOC111022208 [Momordica charantia]	[more]

BLAST of Sed0006725 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006725 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CLU5	1.4e-38	90.70	uncharacterized protein LOC103502424 OS=Cucumis melo OX=3656 GN=LOC103502424 PE=...	[more]
A0A6J1IXF3	3.5e-37	88.37	uncharacterized protein LOC111480034 OS=Cucurbita maxima OX=3661 GN=LOC111480034...	[more]
A0A6J1GXR5	3.0e-36	86.05	uncharacterized protein LOC111457808 OS=Cucurbita moschata OX=3662 GN=LOC1114578...	[more]
A0A6J1DLE5	6.6e-36	88.37	uncharacterized protein LOC111022208 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A067JNC6	1.9e-35	82.56	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25584 PE=4 SV=1	[more]

BLAST of Sed0006725 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29970.1	1.4e-33	70.59	B12D protein	[more]
AT3G48140.1	1.7e-20	51.85	B12D protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 6..73 e-value: 5.5E-25 score: 86.9
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 1..86
None	No IPR available	PANTHER	PTHR33417:SF19	SUBFAMILY NOT NAMED	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006725.1	Sed0006725.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane