Sed0006550 (gene) Chayote v1

Overview


Name	Sed0006550
Type	gene
Organism	Sechium edule (Chayote v1)
Description	exosome complex exonuclease RRP46 homolog
Location	LG03: 9473100 .. 9476011 (+)
RNA-Seq Expression	Sed0006550
Synteny	Sed0006550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGTTTTGCCCTAGGGTCTTCTTCTCCTTCTCCAAGTATAATAAGACCCGGCGGCGGCGGCGCCGCCTTTAAAACCTCTCCGGCTCTCACTGTTCTCTTCTACGCTCAATCGCGAGGTAGAAACTGAGTTTCAATTCATTCAAAAACTGCAAATCGAACCGTTACATCTTCAATTTCTTTCTAATCTTTCGAAACCACCGAAGAACGATCATGGAGATCGACAGAGACGACGGCCGCACCCCCAACCAGTTGAGACCACTTGCCTGTTCTTGCAATGTTCTCAACCGTGCTCATGGCTCCGCCAGTTGGTCGCAAGGTCCGTCCATCTTCAACCGTCTTTTCTAAGTTCCTGTTTCGTTAGGGTTTTGGTTTTTTCAAATTTTGATTTGGAATTTGCAGGCGATACCAAAGTTCTTGCTGCGGTGTATGGACCTAAAGCGGGAACAAAGAAGAACGAAAATCCTGAGAAGGCTTCGATTGAGGTTATATGGAAACCCAAGACTGGGCAGATTGGTAAGCTTCTTTATGGCAATAACTCTATGTGTAATTATGGGATTGAGGAGAAATATAGATATAATCAAATTATTAGCAGTTCAGTAAGTTTTTGTTTACTAGTTGCTGACATTGAAAACATGGCTCGCTTTGATCATTATGTTGTGTTTGAAGTAGGTAATGGTATTCTTTGAATCTACTTAATCCATCTTTTTGCATTTTATGGTGTATTAGGAAAACTGGAAAGGGAGTCTGAGATGATATTGAAGAGGACATTACAGAGTATTTGCATATTAACTATGAATCCCAATACCACCACATCTATTATTGTTCAGGTGAGTCTAATTTTCTTTTCCCACTTTTGGTTCAAAATACCTGTGATCTGCTGCATATTTTGTTCTTCTTCTTATTCATTTGTTATACCTGAAAACTTTATATTACATGCTTCATATGGACCTTTTAATGTTTAAGTAATATGCATCTGATAGTACTAATGTTAGCAACTAGTTTCTGATCTCAAATACATTGATATTTCCTTGTAATTGCAGGTTATTCACGATGATGGAGCTGTATCCTTTTTTATTTAAATGTTGGAGCAGTGGCATTCTTTTAAGTGTATAAATGTAACTATGAAAAATATTCTTGACCTTGTGTAGGTTATGTTGGTATTATGTCCAACTTATCTGTCACACACGGACATTATTTTTTCTTTATTCGTTGCCATTAACATTTTTGAAATATCATCATGAAGGAAACTTCTTTGACAGTCTTCAAATAGCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGGTAATCAAATTTTATGGTATTATTATTAATATCTACACTTGATTAAATGAATTTTATGTACTGACTACTCTACATTGCATATTGCAGTTGCAATTTCCTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAGGCTAGAGGAGCAGGTTGGAAAATCTACATTTATTTAATTTATTTTACTTCCTCTGGAGATGCTTGTCCAATTTGCAGTTACTTTTTTGTATGCATGATAAGAGGCATAGATATGAACCATTGGTAAATTTGCCATGCCAGGGGATGGCTGAGCAGTTAATGATAATTGAATCCATCAAAGAAAATAGGGAAAAGTGAAATTTTGTTGAATCTTATTAATAGTCTAAATGAGTTTTGACGAAAAGTGAACTCAAATTGCAGAAAATGAAGGCAGTTGTACATTTGGTCTTTCCAAACTCACCTGTTTCGGTAATTCCGGAAGGATCTACACAAGTTGCGGGTGAACCTGTAGAGCATGGGATAATAACATCTGTAACTCAAGGTGCAATGGAAGGTATGTTGTGCCTGAAACCTAGCTATTCTTCGATTGGTTGTAATTGAAAACTGTCATGCATCATGTATGTACTGTGTTTCAATGTATTTTAGGATGTCAGTGTCTCAATAAGCTTATACTGAGGGTTCACTTATTGTGTTAATGATCACACTTTATTACTCCAAGAACTAAATGCATTTCATGCTTGGGGTACCAACACATTTTGGACACACATCAGACTCACCACTATGTACTTAAGCAGTCTCCACATGAGTAGCAAGTTTCTTTTTTTTGGTTTTTTTTTGTAATCATGATCTTCAATCACTTGACACCAAGGTACATTTATTAGATGGAATTGGAAACAATAGACCATTTATAATCATCACGGGGTGACGAAGTGTTGAGGGTCTTAGAAAGCTGAGAGGTGATAAGTTCAATCTATGGTGTCTATCTACCTCAGAATTAATTTTCTACGGGTTTTTTTGACATCTAAATGTTGTAGGGTTAGACAATTTGTCTTGTGACATTAGGCTCGGACAATCCCAGATGTCAAAAATTAAAAAAAAGATAGTGACCAATTTATTAACGGTTACGACACTCTTTTCTCATCATGACATGCCAATTCTTTCTAATGGTGTGTTGTGTTTGAGAATGTATTTGGATCTTATTTTAGCTGAAAAATATGAATCTTGATGGAAAAATAAGAGTGGGATCTAAGCTAAGGTGTTTGTTGTTTTAATTGTTAAAGTGGATGATTATATTCAATGCCTGGAACGAGGGCGTGCTGCAACTGCCAAAATTTCTGCTTTTTTGAGAAGAAGCTTGCAGCCCCAACTCCCAACGGATTCGTCAAAAGCGGGATGATCGGTTGCAATTTCTTTCCTATGTATTGTTCTCAACTACTTAATCTGGCTGGGAAGGTATCAATCTCTATTGTATGATTTATTTTTGTGTAATCCCAAATTCATGGTAGATGTGCATTTCAGGAACCAGAGCTGTAACAGAGCATTGATTTAAATGATGATAAATCTTTCATAGTGGATTTGACTGATGC

mRNA sequence

ACAGTTTTGCCCTAGGGTCTTCTTCTCCTTCTCCAAGTATAATAAGACCCGGCGGCGGCGGCGCCGCCTTTAAAACCTCTCCGGCTCTCACTGTTCTCTTCTACGCTCAATCGCGAGGTAGAAACTGAGTTTCAATTCATTCAAAAACTGCAAATCGAACCGTTACATCTTCAATTTCTTTCTAATCTTTCGAAACCACCGAAGAACGATCATGGAGATCGACAGAGACGACGGCCGCACCCCCAACCAGTTGAGACCACTTGCCTGTTCTTGCAATGTTCTCAACCGTGCTCATGGCTCCGCCAGTTGGTCGCAAGGCGATACCAAAGTTCTTGCTGCGGTGTATGGACCTAAAGCGGGAACAAAGAAGAACGAAAATCCTGAGAAGGCTTCGATTGAGGTTATATGGAAACCCAAGACTGGGCAGATTGGAAAACTGGAAAGGGAGTCTGAGATGATATTGAAGAGGACATTACAGAGTATTTGCATATTAACTATGAATCCCAATACCACCACATCTATTATTGTTCAGGTTATTCACGATGATGGAGCTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCCTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAGGCTAGAGGAGCAGAAAATGAAGGCAGTTGTACATTTGGTCTTTCCAAACTCACCTGTTTCGGTAATTCCGGAAGGATCTACACAAGTTGCGGGTGAACCTGTAGAGCATGGGATAATAACATCTGTAACTCAAGGTGCAATGGAAGTGGATGATTATATTCAATGCCTGGAACGAGGGCGTGCTGCAACTGCCAAAATTTCTGCTTTTTTGAGAAGAAGCTTGCAGCCCCAACTCCCAACGGATTCGTCAAAAGCGGGATGATCGGTTGCAATTTCTTTCCTATGTATTGTTCTCAACTACTTAATCTGGCTGGGAAGGTATCAATCTCTATTGTATGATTTATTTTTGTGTAATCCCAAATTCATGGTAGATGTGCATTTCAGGAACCAGAGCTGTAACAGAGCATTGATTTAAATGATGATAAATCTTTCATAGTGGATTTGACTGATGC

Coding sequence (CDS)

ATGGAGATCGACAGAGACGACGGCCGCACCCCCAACCAGTTGAGACCACTTGCCTGTTCTTGCAATGTTCTCAACCGTGCTCATGGCTCCGCCAGTTGGTCGCAAGGCGATACCAAAGTTCTTGCTGCGGTGTATGGACCTAAAGCGGGAACAAAGAAGAACGAAAATCCTGAGAAGGCTTCGATTGAGGTTATATGGAAACCCAAGACTGGGCAGATTGGAAAACTGGAAAGGGAGTCTGAGATGATATTGAAGAGGACATTACAGAGTATTTGCATATTAACTATGAATCCCAATACCACCACATCTATTATTGTTCAGGTTATTCACGATGATGGAGCTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCCTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAGGCTAGAGGAGCAGAAAATGAAGGCAGTTGTACATTTGGTCTTTCCAAACTCACCTGTTTCGGTAATTCCGGAAGGATCTACACAAGTTGCGGGTGAACCTGTAGAGCATGGGATAATAACATCTGTAACTCAAGGTGCAATGGAAGTGGATGATTATATTCAATGCCTGGAACGAGGGCGTGCTGCAACTGCCAAAATTTCTGCTTTTTTGAGAAGAAGCTTGCAGCCCCAACTCCCAACGGATTCGTCAAAAGCGGGATGA

Protein sequence

MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSSKAG

Homology

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BLAST of Sed0006550 vs. NCBI nr
Match: XP_022951618.1 (exosome complex exonuclease RRP46 homolog [Cucurbita moschata] >KAG6585390.1 Exosome complex exonuclease RRP46-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020307.1 Exosome complex exonuclease RRP46-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 458.0 bits (1177), Expect = 5.1e-125
Identity = 229/243 (94.24%), Postives = 237/243 (97.53%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERE EMILKRTLQSICILT+NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPT+LEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGSTQVAGEP+E+GIITS+TQGAM VDDYI CLERGRAATAK+SAFLRRSLQPQLPTDSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KAG 244
           K G
Sbjct: 241 KVG 243

[Close]

BLAST of Sed0006550 vs. NCBI nr
Match: XP_023002484.1 (exosome complex exonuclease RRP46 homolog [Cucurbita maxima])

HSP 1 Score: 456.4 bits (1173), Expect = 1.5e-124
Identity = 228/243 (93.83%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERE EMILKRTLQSICILT+NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPT+LEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGSTQV GEP+E+GIITS+TQGAM VDDYI CLERGRAATAK+SAFLRRSLQPQLPTDSS
Sbjct: 181 EGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KAG 244
           K G
Sbjct: 241 KVG 243

[Close]

BLAST of Sed0006550 vs. NCBI nr
Match: XP_023538111.1 (exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 454.5 bits (1168), Expect = 5.7e-124
Identity = 227/243 (93.42%), Postives = 237/243 (97.53%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRT NQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERE EMILKRTLQSICILT+NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPT+LEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGSTQVAGEP+E+GIITS+TQGAM VDDYI CLERGRAATAK+SAFLRRSLQPQLPTDSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KAG 244
           K G
Sbjct: 241 KVG 243

[Close]

BLAST of Sed0006550 vs. NCBI nr
Match: XP_038885208.1 (exosome complex exonuclease RRP46 homolog [Benincasa hispida])

HSP 1 Score: 453.4 bits (1165), Expect = 1.3e-123
Identity = 228/243 (93.83%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERE EMILKRTLQSICILT NPNTTTSIIVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPT+LEEQKMKA VHLVFPNSPVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVVP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGS QV  EP+EHGIITSVTQG+M VDDYI CLERG AA+AK+SAFLRRSLQPQLPTDSS
Sbjct: 181 EGSRQVVDEPLEHGIITSVTQGSMSVDDYILCLERGCAASAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 243

[Close]

BLAST of Sed0006550 vs. NCBI nr
Match: XP_004150286.1 (exosome complex exonuclease RRP46 homolog [Cucumis sativus] >KGN62820.1 hypothetical protein Csa_022164 [Cucumis sativus])

HSP 1 Score: 451.8 bits (1161), Expect = 3.7e-123
Identity = 225/243 (92.59%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERE EMILKRTLQSICILT NPNTTTSIIVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPT++EE+KMKA VHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGSTQ  GEP+EHGIITSVTQGAM VDDYI CLERGRAAT K+SAFLRRSLQPQLP +SS
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMNSS 240

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 243

[Close]

BLAST of Sed0006550 vs. ExPASy Swiss-Prot
Match: Q9LX74 (Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP46 PE=2 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.2e-103
Identity = 182/243 (74.90%), Postives = 213/243 (87.65%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP +LEE+KM A  +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGS+   GEPVEHGIITS+T G M VDDY  C+E GRAATA +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 239

[Close]

BLAST of Sed0006550 vs. ExPASy Swiss-Prot
Match: Q84T68 (Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=RRP46 PE=1 SV=2)

HSP 1 Score: 302.8 bits (774), Expect = 3.6e-81
Identity = 154/238 (64.71%), Postives = 184/238 (77.31%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME  R DGR PNQLRP +C+ N L+RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKA
Sbjct: 1   MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT++PNTTTS+I+QV+ +DG+LLPCAI
Sbjct: 61  SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NA CAALV AGIPLKHLAVAI C + E G VILD  + EEQ++K+  HLVFPNS  S   
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTD 239
           +   Q   E  E G+ITS+T G M  +DY  C+ERG AA+++IS F+R +LQ Q P D
Sbjct: 181 KEPNQ-KEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGD 237

[Close]

BLAST of Sed0006550 vs. ExPASy Swiss-Prot
Match: Q9NQT4 (Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.7e-35
Identity = 82/219 (37.44%), Postives = 127/219 (57.99%), Query Frame = 0


Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIP 133
           G  E+  E +++ T +++ + T++P T+ ++++QV+ D G+LL C +NA+C ALVDAG+P
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 134 LKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEH 193
           ++ L   ++C L   G ++LDPT  +E++ +AV+                   A + VE 
Sbjct: 148 MRALFCGVACALDSDGTLVLDPTSKQEKEARAVL-----------------TFALDSVER 207

Query: 194 GIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQ 233
            ++ S T+G     +  QCL   +AA+  +  F R SLQ
Sbjct: 208 KLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQ 229

[Close]

BLAST of Sed0006550 vs. ExPASy Swiss-Prot
Match: Q9CRA8 (Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 9.6e-34
Identity = 80/219 (36.53%), Postives = 125/219 (57.08%), Query Frame = 0


Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIP 133
           G  E+  E +++ T +++ +  ++P T+ ++++QV+ D G+LL C +NA+C ALVDAG+P
Sbjct: 88  GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 134 LKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIPEGSTQVAGEPVEH 193
           ++ L   ++C L   G ++LDPT  +E++ +A++                   A +  E 
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEKEARAIL-----------------TFALDSAEQ 207

Query: 194 GIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQ 233
            ++ S T+G     +  QCL   +AA+  I  F R SLQ
Sbjct: 208 KLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQ 229

[Close]

BLAST of Sed0006550 vs. ExPASy Swiss-Prot
Match: Q9SP08 (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 47/148 (31.76%), Postives = 81/148 (54.73%), Query Frame = 0


Query: 5   RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
           R DGR  N++R +     V+++A GSA +  G+TKV+AAVYGP+    K++  +     V
Sbjct: 10  RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVV 69

Query: 65  IWKPKTGQIGKLER----------ESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGA 124
           + +    Q    +R          E  +++++T+++  +  + P++   I +QV+  DG 
Sbjct: 70  LCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGG 129

Query: 125 LLPCAINASCAALVDAGIPLKHLAVAIS 143
                INA+  AL DAGIP++ LAV+ S
Sbjct: 130 TRSACINAATLALADAGIPMRDLAVSCS 157

[Close]

BLAST of Sed0006550 vs. ExPASy TrEMBL
Match: A0A6J1GI69 (exosome complex exonuclease RRP46 homolog OS=Cucurbita moschata OX=3662 GN=LOC111454378 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 2.5e-125
Identity = 229/243 (94.24%), Postives = 237/243 (97.53%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERE EMILKRTLQSICILT+NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPT+LEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGSTQVAGEP+E+GIITS+TQGAM VDDYI CLERGRAATAK+SAFLRRSLQPQLPTDSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KAG 244
           K G
Sbjct: 241 KVG 243

[Close]

BLAST of Sed0006550 vs. ExPASy TrEMBL
Match: A0A6J1KQK5 (exosome complex exonuclease RRP46 homolog OS=Cucurbita maxima OX=3661 GN=LOC111496308 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 7.2e-125
Identity = 228/243 (93.83%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERE EMILKRTLQSICILT+NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPT+LEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGSTQV GEP+E+GIITS+TQGAM VDDYI CLERGRAATAK+SAFLRRSLQPQLPTDSS
Sbjct: 181 EGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KAG 244
           K G
Sbjct: 241 KVG 243

[Close]

BLAST of Sed0006550 vs. ExPASy TrEMBL
Match: A0A0A0LLJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.8e-123
Identity = 225/243 (92.59%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERE EMILKRTLQSICILT NPNTTTSIIVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPT++EE+KMKA VHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGSTQ  GEP+EHGIITSVTQGAM VDDYI CLERGRAAT K+SAFLRRSLQPQLP +SS
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMNSS 240

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 243

[Close]

BLAST of Sed0006550 vs. ExPASy TrEMBL
Match: A0A5A7VGL5 (Exosome complex exonuclease RRP46-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003630 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 8.8e-123
Identity = 224/243 (92.18%), Postives = 233/243 (95.88%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERE EMILKRTLQSICILT NPNTTTSIIVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPT++EE+KMKA VHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGSTQ  GEP+EHG+ITSVTQGAM VDDYI CLERGRAAT K+SAFLRRSLQPQL  DSS
Sbjct: 181 EGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSS 240

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 243

[Close]

BLAST of Sed0006550 vs. ExPASy TrEMBL
Match: A0A1S3BB90 (exosome complex exonuclease RRP46 homolog OS=Cucumis melo OX=3656 GN=LOC103488187 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 8.8e-123
Identity = 224/243 (92.18%), Postives = 233/243 (95.88%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERE EMILKRTLQSICILT NPNTTTSIIVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPT++EE+KMKA VHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGSTQ  GEP+EHG+ITSVTQGAM VDDYI CLERGRAAT K+SAFLRRSLQPQL  DSS
Sbjct: 181 EGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSS 240

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 243

[Close]

BLAST of Sed0006550 vs. TAIR 10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 377.5 bits (968), Expect = 8.2e-105
Identity = 182/243 (74.90%), Postives = 213/243 (87.65%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP +LEE+KM A  +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGS+   GEPVEHGIITS+T G M VDDY  C+E GRAATA +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 239

[Close]

BLAST of Sed0006550 vs. TAIR 10
Match: AT3G46210.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 377.5 bits (968), Expect = 8.2e-105
Identity = 182/243 (74.90%), Postives = 213/243 (87.65%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP +LEE+KM A  +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGS+   GEPVEHGIITS+T G M VDDY  C+E GRAATA +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 239

[Close]

BLAST of Sed0006550 vs. TAIR 10
Match: AT3G46210.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 377.5 bits (968), Expect = 8.2e-105
Identity = 182/243 (74.90%), Postives = 213/243 (87.65%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP +LEE+KM A  +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGS+   GEPVEHGIITS+T G M VDDY  C+E GRAATA +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 239

[Close]

BLAST of Sed0006550 vs. TAIR 10
Match: AT3G46210.4 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 377.5 bits (968), Expect = 8.2e-105
Identity = 182/243 (74.90%), Postives = 213/243 (87.65%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP +LEE+KM A  +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGS+   GEPVEHGIITS+T G M VDDY  C+E GRAATA +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 239

[Close]

BLAST of Sed0006550 vs. TAIR 10
Match: AT3G46210.5 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 377.5 bits (968), Expect = 8.2e-105
Identity = 182/243 (74.90%), Postives = 213/243 (87.65%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERESEMILKRTLQSICILTMNPNTTTSIIVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTRLEEQKMKAVVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP +LEE+KM A  +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQVAGEPVEHGIITSVTQGAMEVDDYIQCLERGRAATAKISAFLRRSLQPQLPTDSS 240
           EGS+   GEPVEHGIITS+T G M VDDY  C+E GRAATA +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 239

The following BLAST results are available for this feature:

BLAST of Sed0006550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951618.1	5.1e-125	94.24	exosome complex exonuclease RRP46 homolog [Cucurbita moschata] >KAG6585390.1 Exo...	[more]
XP_023002484.1	1.5e-124	93.83	exosome complex exonuclease RRP46 homolog [Cucurbita maxima]	[more]
XP_023538111.1	5.7e-124	93.42	exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_038885208.1	1.3e-123	93.83	exosome complex exonuclease RRP46 homolog [Benincasa hispida]	[more]
XP_004150286.1	3.7e-123	92.59	exosome complex exonuclease RRP46 homolog [Cucumis sativus] >KGN62820.1 hypothet...	[more]

BLAST of Sed0006550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX74	1.2e-103	74.90	Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP...	[more]
Q84T68	3.6e-81	64.71	Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9NQT4	8.7e-35	37.44	Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1	[more]
Q9CRA8	9.6e-34	36.53	Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1	[more]
Q9SP08	1.7e-14	31.76	Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41...	[more]

BLAST of Sed0006550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GI69	2.5e-125	94.24	exosome complex exonuclease RRP46 homolog OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1KQK5	7.2e-125	93.83	exosome complex exonuclease RRP46 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0LLJ9	1.8e-123	92.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1	[more]
A0A5A7VGL5	8.8e-123	92.18	Exosome complex exonuclease RRP46-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BB90	8.8e-123	92.18	exosome complex exonuclease RRP46 homolog OS=Cucumis melo OX=3656 GN=LOC10348818...	[more]

BLAST of Sed0006550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46210.1	8.2e-105	74.90	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.2	8.2e-105	74.90	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.3	8.2e-105	74.90	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.4	8.2e-105	74.90	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.5	8.2e-105	74.90	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 1..241 e-value: 2.0E-70 score: 239.0
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 13..133 e-value: 5.1E-25 score: 88.5
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 1..233
None	No IPR available	PANTHER	PTHR11953:SF1	EXOSOME COMPLEX COMPONENT RRP46	coord: 1..233
None	No IPR available	CDD	cd11372	RNase_PH_RRP46	coord: 14..228 e-value: 2.45973E-84 score: 247.863
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 11..132
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 133..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006550.1	Sed0006550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0004536	deoxyribonuclease activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0004540	ribonuclease activity
molecular_function	GO:0003727	single-stranded RNA binding