Sed0006474 (gene) Chayote v1

Overview


Name	Sed0006474
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein of unknown function (DUF1218)
Location	LG05: 41098663 .. 41099910 (-)
RNA-Seq Expression	Sed0006474
Synteny	Sed0006474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTTTTTCAACCCCATAAATAGTTTGTTTCCTCTGCTCACCAACCTTTTGTTTCAAACCCTTTTGATTTTGTTATCCGACTTAGAAGACAAGGATACCATGAAGTTGGTTGGCGTGTTGATTTGTTTGCTCGTTGTGGCTATGGATATTGTCGCTGGGGTGCTCGCCATCGAAGCTGATATTGCACAGAATAAGGTATATTTTAATATTGATTTAAGCTTTTGGGTTGATGGATAATTTGACGGTAATTTAATGATTGTGTTGTCGAATGTCGAGTAGGTGAAGCAATTACGACTATGGATATTTGAGTGCAGAGATCCAAGCCAGCAGGCTTTCAAATTGGGATTGGGAGCAGCAGGGCTGTTGGCTTTAGCCCATGTGATTGCTAATTTGTTGGGGGGCTGCAATTGCATTTGCTCTCAAGAAGAGCTTGAAAAATCTCCTCCAAATAAGCAAATCTCCCTTGCATGCCTTGTTTTCACCTGGTGAGTGACTTGTTTTAGGAGACCCACAAATTTACTTTAAAATCTAATTTCTCCTGAAGTAGTTGGTATAGTGATCAAAGTCCCACCTTATTAAGATAAAAGGAAAACATTTCAGATACATAATTGAGAAATCATACTTTTAATTATTTAAATGACGATAAAAAAACAAAATTATGAAATCTTATACTAAAATGAACAATATTATATATGATGTCTCGCGACTAAATAGTCAAAAGTCTTATTGTTCGATTAGTGAGCAGAGTTTTCGCGTTTTTTATTCTTATCTCCTAATAAAAAATATATTTTTTAATTTTATTTGTGGATGCAACTAACATATTATTAACGAACCACATAAATTTCTATATTTTGTCTATCTCACACTTTTCTTTTATTGTTGATTCCAATTTTCACAAGCTTATATAATTTAGGTATTGGTTGTTCCCAACGAAAGCAAAGTCTTAACTATGTCTTCTTGTTTTTGTTAGGATAATTCTAGCGGTGGGAATTTCTTTGCTGGTGATTGGGGCATTGGCGAACAACAAACGGAGAGCAACATGTGGATTTACACACCATCACTTTTTTTCAATTGGAGGAATTTTGTGTTTTGTTCATGGTTTGTTTTGTGTTGCTTATTATGTTACTTCCACTGCTGTTTAGTAATGGAAATCATATGTCACCTGCATTTTTATTTCTAATTAAAGGTGAATGGTCTGTCCCATTCATTCTAGGTTGACCCTTTTTCTTCATTGTGTTGCATATCAGA

mRNA sequence

GCTTTTTTCAACCCCATAAATAGTTTGTTTCCTCTGCTCACCAACCTTTTGTTTCAAACCCTTTTGATTTTGTTATCCGACTTAGAAGACAAGGATACCATGAAGTTGGTTGGCGTGTTGATTTGTTTGCTCGTTGTGGCTATGGATATTGTCGCTGGGGTGCTCGCCATCGAAGCTGATATTGCACAGAATAAGGTGAAGCAATTACGACTATGGATATTTGAGTGCAGAGATCCAAGCCAGCAGGCTTTCAAATTGGGATTGGGAGCAGCAGGGCTGTTGGCTTTAGCCCATGTGATTGCTAATTTGTTGGGGGGCTGCAATTGCATTTGCTCTCAAGAAGAGCTTGAAAAATCTCCTCCAAATAAGCAAATCTCCCTTGCATGCCTTGTTTTCACCTGGATAATTCTAGCGGTGGGAATTTCTTTGCTGGTGATTGGGGCATTGGCGAACAACAAACGGAGAGCAACATGTGGATTTACACACCATCACTTTTTTTCAATTGGAGGAATTTTGTGTTTTGTTCATGGTTTGTTTTGTGTTGCTTATTATGTTACTTCCACTGCTGTTTAGTAATGGAAATCATATGTCACCTGCATTTTTATTTCTAATTAAAGGTGAATGGTCTGTCCCATTCATTCTAGGTTGACCCTTTTTCTTCATTGTGTTGCATATCAGA

Coding sequence (CDS)

ATGAAGTTGGTTGGCGTGTTGATTTGTTTGCTCGTTGTGGCTATGGATATTGTCGCTGGGGTGCTCGCCATCGAAGCTGATATTGCACAGAATAAGGTGAAGCAATTACGACTATGGATATTTGAGTGCAGAGATCCAAGCCAGCAGGCTTTCAAATTGGGATTGGGAGCAGCAGGGCTGTTGGCTTTAGCCCATGTGATTGCTAATTTGTTGGGGGGCTGCAATTGCATTTGCTCTCAAGAAGAGCTTGAAAAATCTCCTCCAAATAAGCAAATCTCCCTTGCATGCCTTGTTTTCACCTGGATAATTCTAGCGGTGGGAATTTCTTTGCTGGTGATTGGGGCATTGGCGAACAACAAACGGAGAGCAACATGTGGATTTACACACCATCACTTTTTTTCAATTGGAGGAATTTTGTGTTTTGTTCATGGTTTGTTTTGTGTTGCTTATTATGTTACTTCCACTGCTGTTTAG

Protein sequence

MKLVGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGLLALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNKRRATCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTAV

Homology

[Close]

BLAST of Sed0006474 vs. NCBI nr
Match: XP_038902419.1 (uncharacterized protein LOC120089064 [Benincasa hispida])

HSP 1 Score: 286.2 bits (731), Expect = 1.7e-73
Identity = 140/156 (89.74%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MKLVGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGL 60
           M+LVGVLICLLVVAMDIVAG+L IEADIAQNKVK LRLWIFECRDPS+QAFKLGLGAAGL
Sbjct: 1   MRLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60

Query: 61  LALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNK 120
           L LAH+IANLLGGCNCICSQEELEKSPPNKQ+S+ACL+FTWIILAVG+S+LVIGAL NNK
Sbjct: 61  LGLAHIIANLLGGCNCICSQEELEKSPPNKQLSIACLIFTWIILAVGMSMLVIGALGNNK 120

Query: 121 RRATCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTA 157
            RATCGFTHHHF SIGGILCFVHGLFCVAYYVT+TA
Sbjct: 121 SRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATA 156

[Close]

BLAST of Sed0006474 vs. NCBI nr
Match: XP_008455827.1 (PREDICTED: uncharacterized protein LOC103495927 [Cucumis melo])

HSP 1 Score: 283.9 bits (725), Expect = 8.5e-73
Identity = 139/156 (89.10%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MKLVGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGL 60
           MKLVGVLICLLVVAMDIVAG+L IEADIAQNKVK LRLWIFECRDPS+QAFKLGLGAAGL
Sbjct: 1   MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60

Query: 61  LALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNK 120
           L LAH+IANLLGGCNCICSQ+ELEKSPPN+QIS+ACLVFTWIILAVG+S+LVIGA+ NNK
Sbjct: 61  LGLAHIIANLLGGCNCICSQDELEKSPPNRQISIACLVFTWIILAVGMSMLVIGAMGNNK 120

Query: 121 RRATCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTA 157
            RA+CGFTHHHF SIGGILCFVHGLFCVAYYVT+TA
Sbjct: 121 SRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATA 156

[Close]

BLAST of Sed0006474 vs. NCBI nr
Match: XP_004151872.1 (uncharacterized protein LOC101212188 [Cucumis sativus] >KGN63282.1 hypothetical protein Csa_021781 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 138/156 (88.46%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MKLVGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGL 60
           MKLVGVLICLLVVAMDIVAG+L IEADIAQNKVK LRLWIFECRDPS+QAFKLGLGAAGL
Sbjct: 1   MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60

Query: 61  LALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNK 120
           L LAH+IANLLGGCNCICSQ+ELEKSPPN+QIS+ACL+FTWIILAVG+S+LVIGA+ NNK
Sbjct: 61  LGLAHIIANLLGGCNCICSQDELEKSPPNRQISIACLIFTWIILAVGMSMLVIGAMGNNK 120

Query: 121 RRATCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTA 157
            RA+CGFTHHHF SIGGILCFVHGLFCVAYYVT+TA
Sbjct: 121 SRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATA 156

[Close]

BLAST of Sed0006474 vs. NCBI nr
Match: XP_022140603.1 (uncharacterized protein LOC111011214 isoform X2 [Momordica charantia])

HSP 1 Score: 276.2 bits (705), Expect = 1.8e-70
Identity = 133/156 (85.26%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MKLVGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGL 60
           MK+VGVLICLLVVAMDIVAG+L IEA+IAQNKVKQLRLWIFECR+PS+QAFKLGLGAAGL
Sbjct: 1   MKVVGVLICLLVVAMDIVAGLLGIEAEIAQNKVKQLRLWIFECREPSEQAFKLGLGAAGL 60

Query: 61  LALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNK 120
           L LAH+IANLLGGCNCICSQEE++KSPPN+Q+SLACL+FTWIILAVG+S+LVIG L+NNK
Sbjct: 61  LGLAHIIANLLGGCNCICSQEEIQKSPPNRQLSLACLIFTWIILAVGMSMLVIGTLSNNK 120

Query: 121 RRATCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTA 157
            RA+CGFTHHHF SIGGILCFVH LFCVAYYV++TA
Sbjct: 121 SRASCGFTHHHFLSIGGILCFVHALFCVAYYVSATA 156

[Close]

BLAST of Sed0006474 vs. NCBI nr
Match: XP_022944616.1 (uncharacterized protein LOC111449022 [Cucurbita moschata])

HSP 1 Score: 275.4 bits (703), Expect = 3.0e-70
Identity = 136/156 (87.18%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 1   MKLVGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGL 60
           MKLVGVL+CLLVVAMDIVAG+L IEADIAQNKVK LRLWIFECRDPS QA++LGL AAG+
Sbjct: 1   MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGV 60

Query: 61  LALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNK 120
           L LAHVIANLLGGCNCICSQE LEKSPPNKQIS+ACLVFTWIILAV +S+LVIGAL NNK
Sbjct: 61  LGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFTWIILAVAMSMLVIGALGNNK 120

Query: 121 RRATCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTA 157
            RA+CGFTHHHF SIGGILCFVHGLFCVAYYVT+TA
Sbjct: 121 SRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATA 156

[Close]

BLAST of Sed0006474 vs. ExPASy TrEMBL
Match: A0A1S3C1S7 (uncharacterized protein LOC103495927 OS=Cucumis melo OX=3656 GN=LOC103495927 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.1e-73
Identity = 139/156 (89.10%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MKLVGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGL 60
           MKLVGVLICLLVVAMDIVAG+L IEADIAQNKVK LRLWIFECRDPS+QAFKLGLGAAGL
Sbjct: 1   MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60

Query: 61  LALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNK 120
           L LAH+IANLLGGCNCICSQ+ELEKSPPN+QIS+ACLVFTWIILAVG+S+LVIGA+ NNK
Sbjct: 61  LGLAHIIANLLGGCNCICSQDELEKSPPNRQISIACLVFTWIILAVGMSMLVIGAMGNNK 120

Query: 121 RRATCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTA 157
            RA+CGFTHHHF SIGGILCFVHGLFCVAYYVT+TA
Sbjct: 121 SRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATA 156

[Close]

BLAST of Sed0006474 vs. ExPASy TrEMBL
Match: A0A0A0LR43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G423620 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.4e-73
Identity = 138/156 (88.46%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MKLVGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGL 60
           MKLVGVLICLLVVAMDIVAG+L IEADIAQNKVK LRLWIFECRDPS+QAFKLGLGAAGL
Sbjct: 1   MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60

Query: 61  LALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNK 120
           L LAH+IANLLGGCNCICSQ+ELEKSPPN+QIS+ACL+FTWIILAVG+S+LVIGA+ NNK
Sbjct: 61  LGLAHIIANLLGGCNCICSQDELEKSPPNRQISIACLIFTWIILAVGMSMLVIGAMGNNK 120

Query: 121 RRATCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTA 157
            RA+CGFTHHHF SIGGILCFVHGLFCVAYYVT+TA
Sbjct: 121 SRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATA 156

[Close]

BLAST of Sed0006474 vs. ExPASy TrEMBL
Match: A0A6J1CID0 (uncharacterized protein LOC111011214 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011214 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.6e-71
Identity = 133/156 (85.26%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MKLVGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGL 60
           MK+VGVLICLLVVAMDIVAG+L IEA+IAQNKVKQLRLWIFECR+PS+QAFKLGLGAAGL
Sbjct: 1   MKVVGVLICLLVVAMDIVAGLLGIEAEIAQNKVKQLRLWIFECREPSEQAFKLGLGAAGL 60

Query: 61  LALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNK 120
           L LAH+IANLLGGCNCICSQEE++KSPPN+Q+SLACL+FTWIILAVG+S+LVIG L+NNK
Sbjct: 61  LGLAHIIANLLGGCNCICSQEEIQKSPPNRQLSLACLIFTWIILAVGMSMLVIGTLSNNK 120

Query: 121 RRATCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTA 157
            RA+CGFTHHHF SIGGILCFVH LFCVAYYV++TA
Sbjct: 121 SRASCGFTHHHFLSIGGILCFVHALFCVAYYVSATA 156

[Close]

BLAST of Sed0006474 vs. ExPASy TrEMBL
Match: A0A6J1FUW3 (uncharacterized protein LOC111449022 OS=Cucurbita moschata OX=3662 GN=LOC111449022 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.5e-70
Identity = 136/156 (87.18%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 1   MKLVGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGL 60
           MKLVGVL+CLLVVAMDIVAG+L IEADIAQNKVK LRLWIFECRDPS QA++LGL AAG+
Sbjct: 1   MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGV 60

Query: 61  LALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNK 120
           L LAHVIANLLGGCNCICSQE LEKSPPNKQIS+ACLVFTWIILAV +S+LVIGAL NNK
Sbjct: 61  LGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFTWIILAVAMSMLVIGALGNNK 120

Query: 121 RRATCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTA 157
            RA+CGFTHHHF SIGGILCFVHGLFCVAYYVT+TA
Sbjct: 121 SRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATA 156

[Close]

BLAST of Sed0006474 vs. ExPASy TrEMBL
Match: A0A6J1I7N7 (uncharacterized protein LOC111469886 OS=Cucurbita maxima OX=3661 GN=LOC111469886 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.3e-70
Identity = 136/155 (87.74%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MKLVGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGL 60
           MKLVGVL+CLLVVAMDIVAG+LAIEADIAQNKVK LRLWIFECRDPS+QAFKLGLGAAGL
Sbjct: 1   MKLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60

Query: 61  LALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNK 120
           L LAH+IANLLGG NCIC +EELEKSPPNKQIS+ CLVFTWIILAVG+SLLVIGALAN+K
Sbjct: 61  LGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSK 120

Query: 121 RRATCGFTHHHFFSIGGILCFVHGLFCVAYYVTST 156
            R +CGFTHHHF S+GGILCFVHGLFCVAYYV+ST
Sbjct: 121 SRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSST 155

[Close]

BLAST of Sed0006474 vs. TAIR 10
Match: AT2G32280.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-57
Identity = 96/155 (61.94%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 2   KLVGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGLL 61
           K+ G+L+CL++V +D+ A +L I+A++AQN+VK +RLW+FECR+PSQ AF+LGLGAA +L
Sbjct: 3   KIGGILVCLVIVGLDVAAAILGIQAEVAQNQVKHMRLWLFECREPSQDAFRLGLGAAAIL 62

Query: 62  ALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNKR 121
            +AHV+ NL+GGC CICSQ+E ++S   +QIS+ACLV TWI+ AVG   +VIG ++N+K 
Sbjct: 63  VMAHVLLNLVGGCLCICSQDEFQRSSSTRQISMACLVLTWIVFAVGFGSIVIGTMSNSKS 122

Query: 122 RATCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTA 157
           R++CGFTHHHF SIGGILCF+H LFCVAYYV++TA
Sbjct: 123 RSSCGFTHHHFLSIGGILCFLHALFCVAYYVSATA 157

[Close]

BLAST of Sed0006474 vs. TAIR 10
Match: AT4G21310.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 205.7 bits (522), Expect = 2.8e-53
Identity = 96/153 (62.75%), Postives = 123/153 (80.39%), Query Frame = 0


Query: 4   VGVLICLLVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGLLAL 63
           VG  IC+L++AMD+ AG+L IEA+IAQNKVK L++WIFECRDPS  AFK GL A  LL L
Sbjct: 5   VGFFICILILAMDVSAGILGIEAEIAQNKVKHLKMWIFECRDPSYTAFKYGLAACILLVL 64

Query: 64  AHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGALANNKRRA 123
           AHV AN LGGC C+ S+++LEKS  NKQ+++A L+FTWIILA+  S+L++G +AN++ R 
Sbjct: 65  AHVTANFLGGCLCVASRQDLEKSSANKQLAVASLIFTWIILAIAFSMLIVGTMANSRSRK 124

Query: 124 TCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTA 157
            CG +HH   SIGGILCFVHGLF VAYY+++TA
Sbjct: 125 NCGISHHRVLSIGGILCFVHGLFAVAYYISATA 157

[Close]

BLAST of Sed0006474 vs. TAIR 10
Match: AT1G11500.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 110.9 bits (276), Expect = 9.2e-25
Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 0


Query: 4   VGVLICLLVVAMDIVAGVLAIEADIAQNKV------KQLRLWIFEC-RDPSQQAFKLGLG 63
           +G L+ ++++  DI A VL IEA+IAQ+K       +  R     C R PS  AF  G+ 
Sbjct: 5   LGFLVSVVIICADITATVLGIEAEIAQSKAPHHHHQQHSRHSGSGCRRSPSDGAFAEGVA 64

Query: 64  AAGLLALAHVIANLLGGCNCICSQEELEKSPPNKQISLACLVFTWIILAVGISLLVIGAL 123
           A  LL + HV+AN+LGGC  I S+++ +++  NK +++A LV +WI   V  S L+IG L
Sbjct: 65  AMVLLFIVHVLANVLGGCTYIRSKQDFKRATANKILAVAFLVLSWIFFVVSYSTLMIGTL 124

Query: 124 ANNKRRATCGFTHHHFFSIGGILCFVHGLFCVAYYVTSTA 157
           AN++    C   H  FF IGGI C  HG+   AYYV++ A
Sbjct: 125 ANSRTNRLCSLPHRWFFLIGGIFCLGHGVVTSAYYVSAIA 164

[Close]

BLAST of Sed0006474 vs. TAIR 10
Match: AT1G05291.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 98.6 bits (244), Expect = 4.7e-21
Identity = 60/153 (39.22%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 6   VLICL-LVVAMDIVAGVLAIEADIAQNKVKQLRLWIFECRDPSQQAFKLGLGAAGLLALA 65
           +++C+ L V +DIVAG + ++A  AQ  VK  +L   EC+ PS+ AF LG+ A   LA A
Sbjct: 17  IIVCIVLTVGLDIVAGFVGLQAQAAQQYVKHDKL---ECKAPSKTAFVLGIIAVSCLATA 76

Query: 66  HVIANLLGGCNCICSQEELEKSPPNK---QISLACLVFTWIILAVGISLLVIGALANNKR 125
           HV AN++ GC+     + L   P NK     ++ACL   W++   G  +L  G  +N + 
Sbjct: 77  HVSANVI-GCSISNLFQALGALPKNKITTYFNMACLFLIWVVGIFGALILANGIWSNTES 136

Query: 126 RATCGFTHHHFFSIGGILCFVHGLFCVAYYVTS 155
           R  C FT++H FSIGG +CF+H +    YY++S
Sbjct: 137 RIRCRFTNNHVFSIGGKVCFLHAIVSGIYYISS 165

The following BLAST results are available for this feature:

BLAST of Sed0006474 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902419.1	1.7e-73	89.74	uncharacterized protein LOC120089064 [Benincasa hispida]	[more]
XP_008455827.1	8.5e-73	89.10	PREDICTED: uncharacterized protein LOC103495927 [Cucumis melo]	[more]
XP_004151872.1	1.1e-72	88.46	uncharacterized protein LOC101212188 [Cucumis sativus] >KGN63282.1 hypothetical ...	[more]
XP_022140603.1	1.8e-70	85.26	uncharacterized protein LOC111011214 isoform X2 [Momordica charantia]	[more]
XP_022944616.1	3.0e-70	87.18	uncharacterized protein LOC111449022 [Cucurbita moschata]	[more]

BLAST of Sed0006474 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C1S7	4.1e-73	89.10	uncharacterized protein LOC103495927 OS=Cucumis melo OX=3656 GN=LOC103495927 PE=...	[more]
A0A0A0LR43	5.4e-73	88.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G423620 PE=4 SV=1	[more]
A0A6J1CID0	8.6e-71	85.26	uncharacterized protein LOC111011214 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1FUW3	1.5e-70	87.18	uncharacterized protein LOC111449022 OS=Cucurbita moschata OX=3662 GN=LOC1114490...	[more]
A0A6J1I7N7	3.3e-70	87.74	uncharacterized protein LOC111469886 OS=Cucurbita maxima OX=3661 GN=LOC111469886...	[more]

BLAST of Sed0006474 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32280.1	1.4e-57	61.94	Protein of unknown function (DUF1218)	[more]
AT4G21310.1	2.8e-53	62.75	Protein of unknown function (DUF1218)	[more]
AT1G11500.1	9.2e-25	41.25	Protein of unknown function (DUF1218)	[more]
AT1G05291.1	4.7e-21	39.22	Protein of unknown function (DUF1218)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Modifying wall lignin-1/2	PFAM	PF06749	DUF1218	coord: 57..144 e-value: 1.0E-20 score: 74.0
None	No IPR available	PANTHER	PTHR31769	OS07G0462200 PROTEIN-RELATED	coord: 2..156
None	No IPR available	PANTHER	PTHR31769:SF54	BNAA05G10770D PROTEIN	coord: 2..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006474.1	Sed0006474.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010588	cotyledon vascular tissue pattern formation
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0010305	leaf vascular tissue pattern formation
biological_process	GO:0010087	phloem or xylem histogenesis
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane