Sed0006435 (gene) Chayote v1

Overview


Name	Sed0006435
Type	gene
Organism	Sechium edule (Chayote v1)
Description	High mobility group B protein 6
Location	LG14: 5709202 .. 5710640 (+)
RNA-Seq Expression	Sed0006435
Synteny	Sed0006435

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAACAAATTGGCAAATTGACCAACTCAAACATTTGGATTGATTCAAAAAACTATCCTAATTCAATCCTATCCAAACCATGTTCGACCCGACCCGACTCGACCCAACTAGGTGGCAATATTTGTCATTCCCTAACATAAAGGCAAGCAATACAAAAAAGAAAAGGTTAATATTAAATAAAGTAGCCGTTGGCGCCTGTCAACATTCAAATTCAAACCCTAAAAAAAACAAAAACAAAAACCAAATCCTTCCAAAACAAAAAAAAAAACCTCTGACTCTTCACTTTTCTATGCTCCATCCATTTCCAAACACAAAATTCTTCATCTCCACCAATATGCTGCAAGCTCTCCATCTTCCCTTAGCCACACCTCAAGATCTTCCTCTCAATTCCGGCCGCCGCCCGCTCCAACCGAAAAACTCCCTTCCAAATCCTCCACCTGCCGTCGCCAAAATCGCCAAATCCAACCCGGAACGGATCGGGATCTCTGGCGACGCGAACAAGGAGAATCAACCGCCGATTCAGAAAATCGAGTTGTGCGATTTGTCGCTGGCGGATGAACTCAGTGCGGTGAAGAAGAAGATCGAGAGGTTGAGATTGGACGGTGAACGAACCGAGAAGATGCTGAGAGAGAGGGATTTGGTGTTTGAGTTACGGATGAAGGAGATTTTGCAGAGAAGTCAGGAGCAGAGAGATCTGGAAATGGAGGTGGATCGGTTGTTCAGATTGAAGGAACTCAGATCTTACTGTATGGTGAGTGAACAATTTCTTTTCGCTGATTTGAAAGATTTGAATTCTTGATGATCTGTTCTTCGTTTTTTATTTTCGTGTTAATCAACTCGATCTGTTCTTCGGTTGATTTTCGTGTTAATCTGTTCTTTTCGATCTGTTCTTCGGTTGCTTATTTTCAATGACTAAATCTATTCTTCGGTTGATTTGATTTTCGAGTTGATCTGTTCTTCGTTTACATATTTTGAATGATTTGTTTCAGAGAATTTCACCGATTCGAAGTCTGAGAGAGAAAGAGCGAGAGAAGATCTTCACCGACGCACAATTTCCGGTAAACTCCGATCTCTAAACTTCGAATCTATAATCGAAAGTAAAATCGATTTACGCATCTCTCAAATTGTTTCAGGAATTTGAGATCGGCGACGGAGAAGAATCGGTCGGCGAGAATTCATCGTTAGATTCATCAGAATTCGTCGCAGGTTTTTGAAATCGTTCTTGATTTTGTCCTAATTTTTCGATTACTTCTTCTACTACTGTTCTTCATCAATTCAGTGATTCAAAGGAAGAAAAAGAAATTAATGTAATACCTCATTATGTTCTATGCTTTGAGTTGTAATCAATCTTCTTCTTCTTCTTCTTCACTTCATTTAATGTCTGAAAATGAAGAAATTTTGAAATCAATGTCTGTTCATGATTCTTCTCTCATCGCCA

mRNA sequence

GTTGAACAAATTGGCAAATTGACCAACTCAAACATTTGGATTGATTCAAAAAACTATCCTAATTCAATCCTATCCAAACCATGTTCGACCCGACCCGACTCGACCCAACTAGGTGGCAATATTTGTCATTCCCTAACATAAAGGCAAGCAATACAAAAAAGAAAAGGTTAATATTAAATAAAGTAGCCGTTGGCGCCTGTCAACATTCAAATTCAAACCCTAAAAAAAACAAAAACAAAAACCAAATCCTTCCAAAACAAAAAAAAAAACCTCTGACTCTTCACTTTTCTATGCTCCATCCATTTCCAAACACAAAATTCTTCATCTCCACCAATATGCTGCAAGCTCTCCATCTTCCCTTAGCCACACCTCAAGATCTTCCTCTCAATTCCGGCCGCCGCCCGCTCCAACCGAAAAACTCCCTTCCAAATCCTCCACCTGCCGTCGCCAAAATCGCCAAATCCAACCCGGAACGGATCGGGATCTCTGGCGACGCGAACAAGGAGAATCAACCGCCGATTCAGAAAATCGAGTTGTGCGATTTGTCGCTGGCGGATGAACTCAGTGCGGTGAAGAAGAAGATCGAGAGGTTGAGATTGGACGGTGAACGAACCGAGAAGATGCTGAGAGAGAGGGATTTGGTGTTTGAGTTACGGATGAAGGAGATTTTGCAGAGAAGTCAGGAGCAGAGAGATCTGGAAATGGAGGTGGATCGGTTGTTCAGATTGAAGGAACTCAGATCTTACTGTATGAGAATTTCACCGATTCGAAGTCTGAGAGAGAAAGAGCGAGAGAAGATCTTCACCGACGCACAATTTCCGGAATTTGAGATCGGCGACGGAGAAGAATCGGTCGGCGAGAATTCATCGTTAGATTCATCAGAATTCGTCGCAGGTTTTTGAAATCGTTCTTGATTTTGTCCTAATTTTTCGATTACTTCTTCTACTACTGTTCTTCATCAATTCAGTGATTCAAAGGAAGAAAAAGAAATTAATGTAATACCTCATTATGTTCTATGCTTTGAGTTGTAATCAATCTTCTTCTTCTTCTTCTTCACTTCATTTAATGTCTGAAAATGAAGAAATTTTGAAATCAATGTCTGTTCATGATTCTTCTCTCATCGCCA

Coding sequence (CDS)

ATGTTCGACCCGACCCGACTCGACCCAACTAGGTGGCAATATTTGTCATTCCCTAACATAAAGGCAAGCAATACAAAAAAGAAAAGGTTAATATTAAATAAAGTAGCCGTTGGCGCCTGTCAACATTCAAATTCAAACCCTAAAAAAAACAAAAACAAAAACCAAATCCTTCCAAAACAAAAAAAAAAACCTCTGACTCTTCACTTTTCTATGCTCCATCCATTTCCAAACACAAAATTCTTCATCTCCACCAATATGCTGCAAGCTCTCCATCTTCCCTTAGCCACACCTCAAGATCTTCCTCTCAATTCCGGCCGCCGCCCGCTCCAACCGAAAAACTCCCTTCCAAATCCTCCACCTGCCGTCGCCAAAATCGCCAAATCCAACCCGGAACGGATCGGGATCTCTGGCGACGCGAACAAGGAGAATCAACCGCCGATTCAGAAAATCGAGTTGTGCGATTTGTCGCTGGCGGATGAACTCAGTGCGGTGAAGAAGAAGATCGAGAGGTTGAGATTGGACGGTGAACGAACCGAGAAGATGCTGAGAGAGAGGGATTTGGTGTTTGAGTTACGGATGAAGGAGATTTTGCAGAGAAGTCAGGAGCAGAGAGATCTGGAAATGGAGGTGGATCGGTTGTTCAGATTGAAGGAACTCAGATCTTACTGTATGAGAATTTCACCGATTCGAAGTCTGAGAGAGAAAGAGCGAGAGAAGATCTTCACCGACGCACAATTTCCGGAATTTGAGATCGGCGACGGAGAAGAATCGGTCGGCGAGAATTCATCGTTAGATTCATCAGAATTCGTCGCAGGTTTTTGA

Protein sequence

MFDPTRLDPTRWQYLSFPNIKASNTKKKRLILNKVAVGACQHSNSNPKKNKNKNQILPKQKKKPLTLHFSMLHPFPNTKFFISTNMLQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPERIGISGDANKENQPPIQKIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVAGF

Homology

[Close]

BLAST of Sed0006435 vs. NCBI nr
Match: KAA0025412.1 (high mobility group B protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 297.7 bits (761), Expect = 9.9e-77
Identity = 161/191 (84.29%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 87  LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
           +Q LH PL +P+D+PL SGRRPLQPKNSLPNP P+VAKI KS PE  +I +SGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 147 PPIQ--KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
           PP     IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
           QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180

Query: 267 SLDSSEFVAGF 274
           SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191

[Close]

BLAST of Sed0006435 vs. NCBI nr
Match: XP_004142680.1 (high mobility group B protein 6 [Cucumis sativus] >KGN54454.1 hypothetical protein Csa_012022 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 1.3e-76
Identity = 162/191 (84.82%), Postives = 171/191 (89.53%), Query Frame = 0


Query: 87  LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
           +Q LH PL  P+DLPL SGRRPLQPKNSLPNP P+VAKI KS PE  +I +SGDANKEN 
Sbjct: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 147 PP--IQKIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
           PP     IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
           QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180

Query: 267 SLDSSEFVAGF 274
           SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191

[Close]

BLAST of Sed0006435 vs. NCBI nr
Match: XP_008463266.1 (PREDICTED: high mobility group B protein 6 [Cucumis melo] >TYK09760.1 high mobility group B protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 293.9 bits (751), Expect = 1.4e-75
Identity = 160/191 (83.77%), Postives = 171/191 (89.53%), Query Frame = 0


Query: 87  LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
           +Q LH PL +P+D+PL SGRRPLQPKNSLPN  P+VAKI KS PE  +I +SGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 147 PPIQ--KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
           PP     IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
           QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180

Query: 267 SLDSSEFVAGF 274
           SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191

[Close]

BLAST of Sed0006435 vs. NCBI nr
Match: XP_038883293.1 (uncharacterized protein LOC120074285 [Benincasa hispida])

HSP 1 Score: 293.1 bits (749), Expect = 2.4e-75
Identity = 161/197 (81.73%), Postives = 170/197 (86.29%), Query Frame = 0


Query: 87  LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPER--IGISGDANKENQ 146
           +Q LH PLATPQDLPL SGRRPLQPKNSLPN  P+VAK  KS PER  I +SGDANKEN 
Sbjct: 1   MQTLHHPLATPQDLPLKSGRRPLQPKNSLPNSGPSVAKFIKSKPERIQISLSGDANKENH 60

Query: 147 PPIQ--------KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEI 206
           PPI          IE CD SLADEL+AVK+K+ERLRLDGERTE+MLRERDLV ELRMKE+
Sbjct: 61  PPIHATATTTTASIESCDSSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120

Query: 207 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 266
           LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180

Query: 267 SVGENSSLDSSEFVAGF 274
           SVGENSSLDS+ FV GF
Sbjct: 181 SVGENSSLDSAGFVTGF 197

[Close]

BLAST of Sed0006435 vs. NCBI nr
Match: XP_022978293.1 (high mobility group B protein 13-like [Cucurbita maxima])

HSP 1 Score: 288.9 bits (738), Expect = 4.6e-74
Identity = 156/193 (80.83%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 87  LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPERIGIS--GDANKENQ 146
           +QALH PLATP DLPL SGRRPLQPKNSLPNP PAVAK+ KS PERI IS   DANKEN 
Sbjct: 1   MQALHQPLATPHDLPLKSGRRPLQPKNSLPNPVPAVAKVIKSKPERIQISLPTDANKENH 60

Query: 147 PPIQ----KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRS 206
           PPI      +E CDLSLADEL+AVK+K+ERLRL+ ERTE+ML+ERD++ ELRMKE+LQRS
Sbjct: 61  PPIHAKAASVESCDLSLADELNAVKRKLERLRLERERTEQMLKERDMILELRMKELLQRS 120

Query: 207 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 266
           +EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEESVGE
Sbjct: 121 KEQRDLEMEVDRLFRLKELRLYCMRISPIRSLREKEREKIFADAQFPEYEIGDGEESVGE 180

Query: 267 NSSLDSSEFVAGF 274
           NSSLDSSEFV GF
Sbjct: 181 NSSLDSSEFVTGF 193

[Close]

BLAST of Sed0006435 vs. ExPASy TrEMBL
Match: A0A5A7SJQ2 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00510 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 4.8e-77
Identity = 161/191 (84.29%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 87  LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
           +Q LH PL +P+D+PL SGRRPLQPKNSLPNP P+VAKI KS PE  +I +SGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 147 PPIQ--KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
           PP     IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
           QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180

Query: 267 SLDSSEFVAGF 274
           SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191

[Close]

BLAST of Sed0006435 vs. ExPASy TrEMBL
Match: A0A0A0L063 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334650 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 6.3e-77
Identity = 162/191 (84.82%), Postives = 171/191 (89.53%), Query Frame = 0


Query: 87  LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
           +Q LH PL  P+DLPL SGRRPLQPKNSLPNP P+VAKI KS PE  +I +SGDANKEN 
Sbjct: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 147 PP--IQKIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
           PP     IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
           QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180

Query: 267 SLDSSEFVAGF 274
           SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191

[Close]

BLAST of Sed0006435 vs. ExPASy TrEMBL
Match: A0A5D3CEI7 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00430 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 7.0e-76
Identity = 160/191 (83.77%), Postives = 171/191 (89.53%), Query Frame = 0


Query: 87  LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
           +Q LH PL +P+D+PL SGRRPLQPKNSLPN  P+VAKI KS PE  +I +SGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 147 PPIQ--KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
           PP     IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
           QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180

Query: 267 SLDSSEFVAGF 274
           SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191

[Close]

BLAST of Sed0006435 vs. ExPASy TrEMBL
Match: A0A1S3CJ78 (high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 7.0e-76
Identity = 160/191 (83.77%), Postives = 171/191 (89.53%), Query Frame = 0


Query: 87  LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
           +Q LH PL +P+D+PL SGRRPLQPKNSLPN  P+VAKI KS PE  +I +SGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 147 PPIQ--KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
           PP     IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
           QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180

Query: 267 SLDSSEFVAGF 274
           SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191

[Close]

BLAST of Sed0006435 vs. ExPASy TrEMBL
Match: A0A6J1ISM0 (high mobility group B protein 13-like OS=Cucurbita maxima OX=3661 GN=LOC111478322 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 2.2e-74
Identity = 156/193 (80.83%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 87  LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPERIGIS--GDANKENQ 146
           +QALH PLATP DLPL SGRRPLQPKNSLPNP PAVAK+ KS PERI IS   DANKEN 
Sbjct: 1   MQALHQPLATPHDLPLKSGRRPLQPKNSLPNPVPAVAKVIKSKPERIQISLPTDANKENH 60

Query: 147 PPIQ----KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRS 206
           PPI      +E CDLSLADEL+AVK+K+ERLRL+ ERTE+ML+ERD++ ELRMKE+LQRS
Sbjct: 61  PPIHAKAASVESCDLSLADELNAVKRKLERLRLERERTEQMLKERDMILELRMKELLQRS 120

Query: 207 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 266
           +EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEESVGE
Sbjct: 121 KEQRDLEMEVDRLFRLKELRLYCMRISPIRSLREKEREKIFADAQFPEYEIGDGEESVGE 180

Query: 267 NSSLDSSEFVAGF 274
           NSSLDSSEFV GF
Sbjct: 181 NSSLDSSEFVTGF 193

[Close]

BLAST of Sed0006435 vs. TAIR 10
Match: AT5G01910.1 (unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-22
Identity = 71/155 (45.81%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 104 SGRRPLQPKNSLPNPPPAVAKIAKSNPERIGISGDANKENQPPIQKIELCDLSLADELSA 163
           SGR+ LQP+N    P      +     E++       KEN   +      D SLA+ELSA
Sbjct: 4   SGRKALQPRNIYQTPKEDAFFVKPKAAEKL-------KEN---LNLETSIDASLAEELSA 63

Query: 164 VKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQEQRDLEMEVDRLFRLKELRSYC 223
            KKK+ERLR D E TEK+L+ERD   +L M  +LQR + Q+ LE++VDRLFRLKEL +Y 
Sbjct: 64  FKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRLFRLKELHAYS 123

Query: 224 MRISPIRSLREKEREKIFTDAQFPEFEIGDGEESV 259
            +ISPIRSLR KE+++      F   E  D E SV
Sbjct: 124 SKISPIRSLRAKEQQEKMRRFTFAGEEQPDEESSV 148

[Close]

BLAST of Sed0006435 vs. TAIR 10
Match: AT5G01910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-21
Identity = 65/136 (47.79%), Postives = 86/136 (63.24%), Query Frame = 0


Query: 104 SGRRPLQPKNSLPNPPPAVAKIAKSNPERIGISGDANKENQPPIQKIELCDLSLADELSA 163
           SGR+ LQP+N    P      +     E++       KEN   +      D SLA+ELSA
Sbjct: 4   SGRKALQPRNIYQTPKEDAFFVKPKAAEKL-------KEN---LNLETSIDASLAEELSA 63

Query: 164 VKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQEQRDLEMEVDRLFRLKELRSYC 223
            KKK+ERLR D E TEK+L+ERD   +L M  +LQR + Q+ LE++VDRLFRLKEL +Y 
Sbjct: 64  FKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRLFRLKELHAYS 123

Query: 224 MRISPIRSLREKEREK 240
            +ISPIRSLR KE+++
Sbjct: 124 SKISPIRSLRAKEQQE 129

The following BLAST results are available for this feature:

BLAST of Sed0006435 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025412.1	9.9e-77	84.29	high mobility group B protein 6 [Cucumis melo var. makuwa]	[more]
XP_004142680.1	1.3e-76	84.82	high mobility group B protein 6 [Cucumis sativus] >KGN54454.1 hypothetical prote...	[more]
XP_008463266.1	1.4e-75	83.77	PREDICTED: high mobility group B protein 6 [Cucumis melo] >TYK09760.1 high mobil...	[more]
XP_038883293.1	2.4e-75	81.73	uncharacterized protein LOC120074285 [Benincasa hispida]	[more]
XP_022978293.1	4.6e-74	80.83	high mobility group B protein 13-like [Cucurbita maxima]	[more]

BLAST of Sed0006435 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006435 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJQ2	4.8e-77	84.29	High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A0A0L063	6.3e-77	84.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334650 PE=4 SV=1	[more]
A0A5D3CEI7	7.0e-76	83.77	High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CJ78	7.0e-76	83.77	high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=...	[more]
A0A6J1ISM0	2.2e-74	80.83	high mobility group B protein 13-like OS=Cucurbita maxima OX=3661 GN=LOC11147832...	[more]

BLAST of Sed0006435 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01910.1	2.6e-22	45.81	unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bac...	[more]
AT5G01910.2	1.3e-21	47.79	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36790	MYELIN TRANSCRIPTION FACTOR	coord: 91..245

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006435.1	Sed0006435.1	mRNA
Sed0006435.2	Sed0006435.2	mRNA