Sed0006420 (gene) Chayote v1

Overview


Name	Sed0006420
Type	gene
Organism	Sechium edule (Chayote v1)
Description	lamin-like protein
Location	LG12: 27231556 .. 27232955 (-)
RNA-Seq Expression	Sed0006420
Synteny	Sed0006420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATCAGGCGGCTTGGTAACTATTATGTGAAGTTGAGGGTGAACCAATGCTGCATATGGTTGGATGAGGAAAATACATGGAAAACTGATATTAACTTCACTGATTGGTTAATTCATGAGCACTTCTATGTTGGTGATTGGCAATGTAAGGTTTTTTTTCTCATTATATCAAATTTTATATGGGTAAGATTTCTCTCAATTTTCATCATGGGTCACTTTGTTTTCCTCCTAAGTTTGCTTTTGATAACTGTAAGATAGAAATTTGGCAATATATGGATTGTGTTGGGAATATTATTATTATATAAAGACTAGGAAAAAGGTCAGGTATTGAATTGGTCAGCTTTCATGGAGTTGAGGGTTAGAAAAATGATTAGGGTTTCCATTGGCAATGAGAATCTTTTCACCTAAGCTAATTAATATCTCATTTGAACTATTTGAAGTAATCATTATTTTTTAGTTAGTTCTTAATATCTTTGTGCTCAACTCTTTTCAACATAACCAATGATCAAAAGACTTTTTAAGTTAATGAAATCCCACATCTTGAAAAAAGAAAATTTTAATTTGGTGCATATATTATATGAGAATTGATATATATATATATATTTTTGAGTACATATTGGGAGAGGGGAGACAAATACCGATTTTCGGGCTCAAACCCGTGACACTGGTATTGAACTGGTTTACAACCAAACATTGAACCATTGCGTCACTAACTCATTCGGTATATGAGAATTGATATAACCAATAAATAAAGGAGTGTTTTTAAAGTTTAGTTTAATATAAATCAGTTATTTGATTTTGTGATAATCAAACGTGTTTGGTAAAAACCCACGCACGTGCATTTCTTTAAAGATGTTTAATCAAATTTGATCTTTTCCTAATCAAACAAGGAATAGATTGAGATGAATGTTTAAATTTGATAAGCATGTTTATATTGAAATGTCTTATGATGACTTAAGTATATTGTTTAGATTGAAAAATATTAGTATAGGAGTTCAACTTGTTATGAAACTAATCTTCCAACAAAAAATTTGACATTTGAATTTTTAGTCTCATATTATTAAACTAAAAAATTATACACTCAAATTGGCATTGAAGTTTAGGTTTATACGATGTTTTTTAATGTTATACATATATTTTGTCTTTCTATGGATTTTGGGTACAATAAATATACCTACAACGTACTCGAAGTGAACAAAACGAACTACGAGAGTTGCATCGAAAAAGATTGCATTTTCAACCTAACATGGAGAGGAAGTGTGTTCAATCTAAGTGAAGCAAGACCATATTACTTTATAAGTGGAAGAGTATTTTGCTCTCAAGGAATGAAGGTTACTATCTTTGTTGAAAATTTTCTCCTCCCATTTCTCCAAATTCACCTCACCAACAAAAATTAA

mRNA sequence

ATGGCGATCAGGCGGCTTGGTAACTATTATGTGAAGTTGAGGGTGAACCAATGCTGCATATGGTTGGATGAGGAAAATACATGGAAAACTGATATTAACTTCACTGATTGGTTAATTCATGAGCACTTCTATGTTGGTGATTGGCAATGTAAGGTTTATACGATGTTTTTTAATGTTATACATATATTTTGTCTTTCTATGGATTTTGGGTACAATAAATATACCTACAACGTACTCGAAGTGAACAAAACGAACTACGAGAGTTGCATCGAAAAAGATTGCATTTTCAACCTAACATGGAGAGGAAGTGTGTTCAATCTAAGTGAAGCAAGACCATATTACTTTATAAGTGGAAGAGTATTTTGCTCTCAAGGAATGAAGGTTACTATCTTTGTTGAAAATTTTCTCCTCCCATTTCTCCAAATTCACCTCACCAACAAAAATTAA

Coding sequence (CDS)

ATGGCGATCAGGCGGCTTGGTAACTATTATGTGAAGTTGAGGGTGAACCAATGCTGCATATGGTTGGATGAGGAAAATACATGGAAAACTGATATTAACTTCACTGATTGGTTAATTCATGAGCACTTCTATGTTGGTGATTGGCAATGTAAGGTTTATACGATGTTTTTTAATGTTATACATATATTTTGTCTTTCTATGGATTTTGGGTACAATAAATATACCTACAACGTACTCGAAGTGAACAAAACGAACTACGAGAGTTGCATCGAAAAAGATTGCATTTTCAACCTAACATGGAGAGGAAGTGTGTTCAATCTAAGTGAAGCAAGACCATATTACTTTATAAGTGGAAGAGTATTTTGCTCTCAAGGAATGAAGGTTACTATCTTTGTTGAAAATTTTCTCCTCCCATTTCTCCAAATTCACCTCACCAACAAAAATTAA

Protein sequence

MAIRRLGNYYVKLRVNQCCIWLDEENTWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTNYESCIEKDCIFNLTWRGSVFNLSEARPYYFISGRVFCSQGMKVTIFVENFLLPFLQIHLTNKN

Homology

[Close]

BLAST of Sed0006420 vs. NCBI nr
Match: XP_008451094.1 (PREDICTED: lamin-like protein [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 3.9e-27
Identity = 64/113 (56.64%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 27  TWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTNY 86
           TW T+INFTDW IHEHFYVGDW                  + FG++K+ YNVLEVNKT+Y
Sbjct: 40  TWTTNINFTDWSIHEHFYVGDW------------------LYFGFDKHIYNVLEVNKTSY 99

Query: 87  ESCIEKDCIFNLTWRG-SVFNLSEARPYYFISGRVFCSQGMKVTIFVENFLLP 139
           E+C +KD IFN+T  G  VFNL+EA+ YYF+SGR FC QGMKV +FVE +  P
Sbjct: 100 ENCNDKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEYSTP 134

[Close]

BLAST of Sed0006420 vs. NCBI nr
Match: XP_031736018.1 (lamin-like protein [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 6.7e-27
Identity = 64/113 (56.64%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 27  TWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTNY 86
           TW T+INFTDW IH+HFYVGDW                  + FG++K+ YNVLEVNKT+Y
Sbjct: 41  TWTTNINFTDWSIHDHFYVGDW------------------LYFGFDKHIYNVLEVNKTSY 100

Query: 87  ESCIEKDCIFNLTWRG-SVFNLSEARPYYFISGRVFCSQGMKVTIFVENFLLP 139
           E+C EKD IFN+T  G  VFNL+EA+ YYF+SGR FC QGMKV +FVE +  P
Sbjct: 101 ENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEYSPP 135

[Close]

BLAST of Sed0006420 vs. NCBI nr
Match: XP_038880463.1 (lamin-like protein [Benincasa hispida])

HSP 1 Score: 129.0 bits (323), Expect = 3.3e-26
Identity = 64/108 (59.26%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 27  TWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTNY 86
           TW T+INFTDW IHEHFYVGDW                  + FG++K+ YNVLEVNKT+Y
Sbjct: 41  TWTTNINFTDWSIHEHFYVGDW------------------LYFGFDKHIYNVLEVNKTSY 100

Query: 87  ESCIEKDCIFNLTWRG-SVFNLSEARPYYFISGRVFCSQGMKVTIFVE 134
           ESC +K  IFNLT  G  VFNL+EA+ YYF+SGR FC QGMKV +FVE
Sbjct: 101 ESCNDKGFIFNLTRGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVE 130

[Close]

BLAST of Sed0006420 vs. NCBI nr
Match: XP_022157364.1 (lamin-like protein [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 4.3e-26
Identity = 61/108 (56.48%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 27  TWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTNY 86
           TW  ++NFTDW IHEHFYVGDW                  + FG++K+ YNVLEVN+T+Y
Sbjct: 38  TWAPNVNFTDWSIHEHFYVGDW------------------LYFGFDKHIYNVLEVNETSY 97

Query: 87  ESCIEKDCIFNLTWRG-SVFNLSEARPYYFISGRVFCSQGMKVTIFVE 134
           ESC EKD IFN+T  G  VFNL++A+PYYF+SGR FC QGMK+ +FVE
Sbjct: 98  ESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVE 127

[Close]

BLAST of Sed0006420 vs. NCBI nr
Match: XP_022988228.1 (lamin-like protein [Cucurbita maxima])

HSP 1 Score: 128.3 bits (321), Expect = 5.7e-26
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 27  TWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTNY 86
           TW T+INFTDW IHEHFYVGDW                  + FG++K  YNVL+VNKT+Y
Sbjct: 44  TWTTNINFTDWSIHEHFYVGDW------------------LYFGFDKRIYNVLQVNKTSY 103

Query: 87  ESCIEKDCIFNLTWRG-SVFNLSEARPYYFISGRVFCSQGMKVTIFVEN 135
           +SC E D +FN+T  G  VFNL++A+PYYF+SGR FC QGMKV IFVE+
Sbjct: 104 DSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVED 134

[Close]

BLAST of Sed0006420 vs. ExPASy Swiss-Prot
Match: Q39131 (Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 24  EENTWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNK 83
           E   W  +IN+T W   +HFY+GDW                  + F +++  +N+LEVNK
Sbjct: 33  ENKFWNPNINYTIWAQGKHFYLGDW------------------LYFVFDRNQHNILEVNK 92

Query: 84  TNYESCIEKDCIFNLTWRGS---VFNLSEARPYYFISGRVFCSQGMKVTIFVENFLLP 139
           T+YE CI    I N T RG+   +  L++ + YY + G+  C  GMK+++ VE    P
Sbjct: 93  TDYEGCIADHPIRNWT-RGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPP 131

[Close]

BLAST of Sed0006420 vs. ExPASy Swiss-Prot
Match: Q9T076 (Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.7e-04
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 69  FGYNKYTYNVLEVNKTNYESCIEKDCIFNLTWRGSVFNLSEARPYYFISGRV-FCSQGMK 128
           F Y K   +VLEVNK +Y++C  K+ I  +    S  +L    P+YFISG    C +G K
Sbjct: 64  FSYAKGADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQK 123

Query: 129 VTIFVENFLLP 139
           + + V +  +P
Sbjct: 124 LNVVVISARIP 134

[Close]

BLAST of Sed0006420 vs. ExPASy TrEMBL
Match: A0A1S3BQT0 (lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103492474 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 64/113 (56.64%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 27  TWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTNY 86
           TW T+INFTDW IHEHFYVGDW                  + FG++K+ YNVLEVNKT+Y
Sbjct: 40  TWTTNINFTDWSIHEHFYVGDW------------------LYFGFDKHIYNVLEVNKTSY 99

Query: 87  ESCIEKDCIFNLTWRG-SVFNLSEARPYYFISGRVFCSQGMKVTIFVENFLLP 139
           E+C +KD IFN+T  G  VFNL+EA+ YYF+SGR FC QGMKV +FVE +  P
Sbjct: 100 ENCNDKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEYSTP 134

[Close]

BLAST of Sed0006420 vs. ExPASy TrEMBL
Match: A0A6J1DWA4 (lamin-like protein OS=Momordica charantia OX=3673 GN=LOC111024085 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 61/108 (56.48%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 27  TWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTNY 86
           TW  ++NFTDW IHEHFYVGDW                  + FG++K+ YNVLEVN+T+Y
Sbjct: 38  TWAPNVNFTDWSIHEHFYVGDW------------------LYFGFDKHIYNVLEVNETSY 97

Query: 87  ESCIEKDCIFNLTWRG-SVFNLSEARPYYFISGRVFCSQGMKVTIFVE 134
           ESC EKD IFN+T  G  VFNL++A+PYYF+SGR FC QGMK+ +FVE
Sbjct: 98  ESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVE 127

[Close]

BLAST of Sed0006420 vs. ExPASy TrEMBL
Match: A0A6J1JLN0 (lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485528 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.7e-26
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 27  TWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTNY 86
           TW T+INFTDW IHEHFYVGDW                  + FG++K  YNVL+VNKT+Y
Sbjct: 44  TWTTNINFTDWSIHEHFYVGDW------------------LYFGFDKRIYNVLQVNKTSY 103

Query: 87  ESCIEKDCIFNLTWRG-SVFNLSEARPYYFISGRVFCSQGMKVTIFVEN 135
           +SC E D +FN+T  G  VFNL++A+PYYF+SGR FC QGMKV IFVE+
Sbjct: 104 DSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVED 134

[Close]

BLAST of Sed0006420 vs. ExPASy TrEMBL
Match: A0A6J1HAJ6 (lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461613 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 27  TWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTNY 86
           TW T++NFTDW IHEHFYVGDW                  + FG++K  YNVL+VNKT+Y
Sbjct: 44  TWTTNVNFTDWSIHEHFYVGDW------------------LYFGFDKRIYNVLQVNKTSY 103

Query: 87  ESCIEKDCIFNLTWRG-SVFNLSEARPYYFISGRVFCSQGMKVTIFVEN 135
           +SC E D +FN+T  G  VFNL++A+PYYF+SGR FC QGMKV IFVE+
Sbjct: 104 DSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVED 134

[Close]

BLAST of Sed0006420 vs. ExPASy TrEMBL
Match: A0A2I4E756 (lamin-like protein OS=Juglans regia OX=51240 GN=LOC108986888 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.3e-23
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 26  NTWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTN 85
           N+W  +INFT+W  HE FYVGDW                  + FG++K  YNVLEVNKT+
Sbjct: 36  NSWAPNINFTEWSSHEQFYVGDW------------------LYFGFDKQLYNVLEVNKTS 95

Query: 86  YESCIEKDCIFNLTWRG-SVFNLSEARPYYFISGRVFCSQGMKVTIFVENFLLP 139
           Y++CI++D I N+T  G  VFNL+EA+P+YF+SGR +CS+GMKV ++V +F  P
Sbjct: 96  YDNCIDEDFITNITRGGRDVFNLTEAKPFYFLSGRGYCSKGMKVAVYVYDFEPP 131

[Close]

BLAST of Sed0006420 vs. TAIR 10
Match: AT2G27035.1 (early nodulin-like protein 20 )

HSP 1 Score: 101.7 bits (252), Expect = 5.3e-22
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 27  TWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTNY 86
           TW +D+NF+DW  H+ FY GDW                  + FG+N+  +N+L+VNK++Y
Sbjct: 36  TWNSDVNFSDWANHQRFYSGDW------------------LYFGFNRTRHNILQVNKSSY 95

Query: 87  ESCIEKDCIFNLTWRG-SVFNLSEARPYYFISGRVFCSQGMKVTIFV 133
           E C++ D IFN+T  G  VF L E +PYYFI GR +C +GMK+ I V
Sbjct: 96  EQCVDNDYIFNITRGGRDVFQLLEPKPYYFICGRGYCLKGMKLAITV 124

[Close]

BLAST of Sed0006420 vs. TAIR 10
Match: AT4G12880.1 (early nodulin-like protein 19 )

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-13
Identity = 44/113 (38.94%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 24  EENTWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNK 83
           ++  W  +IN+T W   +HFYVGDW   +Y +F+   H               N+LEVNK
Sbjct: 33  DKKFWNPNINYTLWAQGKHFYVGDW---LYFVFYRDQH---------------NILEVNK 92

Query: 84  TNYESCIEKDCIFNLTWRGS---VFNLSEARPYYFISGRVFCSQGMKVTIFVE 134
            +YE CI    I N T RG+   +  L E R YY + GR  C QGMK+ + VE
Sbjct: 93  ADYEKCISNRPIRNYT-RGAGRDIVPLYETRRYYLLDGRGGCVQGMKLDVLVE 126

[Close]

BLAST of Sed0006420 vs. TAIR 10
Match: AT5G15350.1 (early nodulin-like protein 17 )

HSP 1 Score: 71.2 bits (173), Expect = 7.6e-13
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 24  EENTWKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNK 83
           E   W  +IN+T W   +HFY+GDW                  + F +++  +N+LEVNK
Sbjct: 33  ENKFWNPNINYTIWAQGKHFYLGDW------------------LYFVFDRNQHNILEVNK 92

Query: 84  TNYESCIEKDCIFNLTWRGS---VFNLSEARPYYFISGRVFCSQGMKVTIFVENFLLP 139
           T+YE CI    I N T RG+   +  L++ + YY + G+  C  GMK+++ VE    P
Sbjct: 93  TDYEGCIADHPIRNWT-RGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPP 131

[Close]

BLAST of Sed0006420 vs. TAIR 10
Match: AT3G01070.1 (early nodulin-like protein 16 )

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-10
Identity = 40/110 (36.36%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 28  WKTDINFTDWLIHEHFYVGDWQCKVYTMFFNVIHIFCLSMDFGYNKYTYNVLEVNKTNYE 87
           W  +IN+T W   +HFY+ DW                  + F Y +  YNV+EVN+TNY 
Sbjct: 35  WNPNINYTIWAQDKHFYLDDW------------------LYFVYERNQYNVIEVNETNYI 94

Query: 88  SCIEKDCIFNLTWRGS---VFNLSEARPYYFISGR-VFCSQGMKVTIFVE 134
           SC   + I N + RG+   + +L+  R YY ISG    C  GMK+ + VE
Sbjct: 95  SCNPNNPIANWS-RGAGRDLVHLNVTRHYYLISGNGGGCYGGMKLAVLVE 125

[Close]

BLAST of Sed0006420 vs. TAIR 10
Match: AT4G12880.2 (early nodulin-like protein 19 )

HSP 1 Score: 57.8 bits (138), Expect = 8.7e-09
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 63  FCLSMDFGYNKYTYNVLEVNKTNYESCIEKDCIFNLTWRGS---VFNLSEARPYYFISGR 122
           F  S++F + +  +N+LEVNK +YE CI    I N T RG+   +  L E R YY + GR
Sbjct: 16  FNFSLNFVFYRDQHNILEVNKADYEKCISNRPIRNYT-RGAGRDIVPLYETRRYYLLDGR 75

Query: 123 VFCSQGMKVTIFVE 134
             C QGMK+ + VE
Sbjct: 76  GGCVQGMKLDVLVE 88

The following BLAST results are available for this feature:

BLAST of Sed0006420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451094.1	3.9e-27	56.64	PREDICTED: lamin-like protein [Cucumis melo]	[more]
XP_031736018.1	6.7e-27	56.64	lamin-like protein [Cucumis sativus]	[more]
XP_038880463.1	3.3e-26	59.26	lamin-like protein [Benincasa hispida]	[more]
XP_022157364.1	4.3e-26	56.48	lamin-like protein [Momordica charantia]	[more]
XP_022988228.1	5.7e-26	56.88	lamin-like protein [Cucurbita maxima]	[more]

BLAST of Sed0006420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39131	1.1e-11	33.90	Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1	[more]
Q9T076	3.7e-04	36.62	Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 S...	[more]

BLAST of Sed0006420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BQT0	1.9e-27	56.64	lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103492474 PE=4 SV=1	[more]
A0A6J1DWA4	2.1e-26	56.48	lamin-like protein OS=Momordica charantia OX=3673 GN=LOC111024085 PE=4 SV=1	[more]
A0A6J1JLN0	2.7e-26	56.88	lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485528 PE=4 SV=1	[more]
A0A6J1HAJ6	3.6e-26	55.96	lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461613 PE=4 SV=1	[more]
A0A2I4E756	6.3e-23	49.12	lamin-like protein OS=Juglans regia OX=51240 GN=LOC108986888 PE=4 SV=1	[more]

BLAST of Sed0006420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27035.1	5.3e-22	43.93	early nodulin-like protein 20	[more]
AT4G12880.1	1.2e-13	38.94	early nodulin-like protein 19	[more]
AT5G15350.1	7.6e-13	33.90	early nodulin-like protein 17	[more]
AT3G01070.1	2.7e-10	36.36	early nodulin-like protein 16	[more]
AT4G12880.2	8.7e-09	43.24	early nodulin-like protein 19	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 68..126 e-value: 1.6E-5 score: 24.8
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 11..134 score: 14.978089
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 22..135 e-value: 8.2E-16 score: 60.1
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 24..132
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 26..136
None	No IPR available	PANTHER	PTHR33021:SF262	EARLY NODULIN-LIKE PROTEIN 20	coord: 26..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006420.1	Sed0006420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031224	intrinsic component of membrane
molecular_function	GO:0009055	electron transfer activity