Sed0006374 (gene) Chayote v1

Overview


Name	Sed0006374
Type	gene
Organism	Sechium edule (Chayote v1)
Description	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit
Location	Contig00303_ERROPOS193979: 150784 .. 152352 (-)
RNA-Seq Expression	Sed0006374
Synteny	Sed0006374

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGGGGTGGTGGGGAGTAGGGTATTTGGTTTGCATCTTGAAGGAAATCAGAGAAGGAAGGAAATCAGAGAAGATGGGAAATCATAGTAAGGGTTTGGGATCGACGGGAGAATTCTTCAAGAGGAGAGACGAGTGGAGGAAGCATCCGATGCTGTCGAACCAGTTCCGGCACGCCACTCCCGGCCTCGGCATCGCCCTCGTCGCTTTCGGCATCTACCTCGTCGGCGAGCAAGTCTACACCAGGCTCTACGCTCCTCCTCATGCCTCCGCCGACCATTGATTCGGTCATTTCGCTCTCCCTTTTTCGTTCTCTATTGCAATTTCCAATTTATTTCAAGCGATACATACCCCCTTCCATTTCTACAGAGACCAAACAAATCCATTCGCCTTTCAGATTCCATCCATCCTATAGCCTTTCGATTATCCTTTTTGCACTTTATCAATTGCCCTCATGTGTAATGATATGCTGGAGAAACCTCAATGCACGACATTTTTGTAACTGAGATAGGTTTTATTTGGTTGGATTTTAGTCATTTTGTTGTTGTTAGGGTTTGGACTTCTTTTTTTTTCTTTTTGGGTATGCTCTTGGATATATTTTTGGGGATTTTGCATTTATTTCCATCTATAGCACAAAATCCAAATAATTTGGAGGAAAAAATTCAAATCGAGTTCTATCCGTGATAAAATTCAATCAATAATAGACTTATTCTCTATCACTGCTTGAGTTTTCTATCAATGATAGAAATCGATGTGCTATACCCGAATTATTTTAAAAATTCTGCTGCAAATAGAATACAAGAGATAAAATGTGTCGTTGATGGTAAATTCTTTATATTTTTTTCATTTCTCTTAATGAAATCTAAAATGACATATCTATCCGATAGCATTTCTCATTTAATTTTGATTGGATAGATTTCTATAACTATGCACCTTCCCAAGAGGTGGCATAGTGGTTGAAGACTTGTTTTGAGCGTATGCTCTCCTCAAGGTCTCAGGTTCGAGACTCAGCTATGACATTATTTCTTCGATGTCTCCCGGTGTCTGGCCTAAGGACGGACGTGGTTTCCCTTGTTTAAAAAAAAAAATTATGCAAAACTTTTTCTTGTTGTGTTGGATTCAAAATATTCTTTCTCCACTTTCTCTTCCCTCCTAATATGTTGTTTCAAATGTGCAACTCATGTGACTCGTAGCTAATTTTGCAGATGAATTGTTGCTGCTGATCTACTAAGCTTCTTGGAGTTCTATGGCAGTCATTTTACCTCTTACCTTTTTTGTGTGCAATAAAAGTAAAACTTTTGCTGGACAAAGCGGTTGAAGCTTGTAAATGTACTTGATAAGGTTGGGATTGAAACTTCCATCAGATCTGAAATGTTGAATTTTTTAATCTAGTGGCTCTAGCAATTCATTTTGCTTACAGTTAGTTATAAGATTTCATTTTTATTTAAGATTTTACTTATCATTGCTTTGGTCCTTAAATGATGTGTTGAGCAATATTGTTCCCGACCCATAATGTATAGCTATAGCTTGTTGGAAATAGAATCCTTCAATGCAGCAGATGTTCTTATAAA

mRNA sequence

ATTTGGGGTGGTGGGGAGTAGGGTATTTGGTTTGCATCTTGAAGGAAATCAGAGAAGGAAGGAAATCAGAGAAGATGGGAAATCATAGTAAGGGTTTGGGATCGACGGGAGAATTCTTCAAGAGGAGAGACGAGTGGAGGAAGCATCCGATGCTGTCGAACCAGTTCCGGCACGCCACTCCCGGCCTCGGCATCGCCCTCGTCGCTTTCGGCATCTACCTCGTCGGCGAGCAAGTCTACACCAGGCTCTACGCTCCTCCTCATGCCTCCGCCGACCATTGATTCGATGAATTGTTGCTGCTGATCTACTAAGCTTCTTGGAGTTCTATGGCAGTCATTTTACCTCTTACCTTTTTTGTGTGCAATAAAAGTAAAACTTTTGCTGGACAAAGCGGTTGAAGCTTGTAAATGTACTTGATAAGGTTGGGATTGAAACTTCCATCAGATCTGAAATGTTGAATTTTTTAATCTAGTGGCTCTAGCAATTCATTTTGCTTACAGTTAGTTATAAGATTTCATTTTTATTTAAGATTTTACTTATCATTGCTTTGGTCCTTAAATGATGTGTTGAGCAATATTGTTCCCGACCCATAATGTATAGCTATAGCTTGTTGGAAATAGAATCCTTCAATGCAGCAGATGTTCTTATAAA

Coding sequence (CDS)

ATGGGAAATCATAGTAAGGGTTTGGGATCGACGGGAGAATTCTTCAAGAGGAGAGACGAGTGGAGGAAGCATCCGATGCTGTCGAACCAGTTCCGGCACGCCACTCCCGGCCTCGGCATCGCCCTCGTCGCTTTCGGCATCTACCTCGTCGGCGAGCAAGTCTACACCAGGCTCTACGCTCCTCCTCATGCCTCCGCCGACCATTGA

Protein sequence

MGNHSKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYAPPHASADH

Homology

[Close]

BLAST of Sed0006374 vs. NCBI nr
Match: PON80906.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit [Trema orientale])

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MGNHSKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYA 60
          M N+ K LG TGEFF+RRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVY +LYA
Sbjct: 1  MANYKKPLGPTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNKLYA 60

Query: 61 PPHASA 67
          P  +S+
Sbjct: 61 PSSSSS 66

[Close]

BLAST of Sed0006374 vs. NCBI nr
Match: XP_030498561.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B-like [Cannabis sativa])

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MGNHSKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYA 60
          M N+ K LG+TGEFF+RRDEWRKHPML+NQFRHATPGLGIALVAFG+YL+GEQVY +LYA
Sbjct: 1  MANYKKPLGATGEFFRRRDEWRKHPMLTNQFRHATPGLGIALVAFGVYLIGEQVYDKLYA 60

Query: 61 PPHASADH 69
          P  +S  H
Sbjct: 61 PSSSSHTH 68

[Close]

BLAST of Sed0006374 vs. NCBI nr
Match: PON53722.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit [Parasponia andersonii])

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MGNHSKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYA 60
          M N+ K LG TGEFF+RRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVY +LYA
Sbjct: 1  MANYKKPLGPTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNKLYA 60

Query: 61 PPHASA 67
          P  +S+
Sbjct: 61 PSSSSS 66

[Close]

BLAST of Sed0006374 vs. NCBI nr
Match: XP_028949337.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B-like [Malus domestica] >XP_028949338.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B-like [Malus domestica] >TQD77071.1 hypothetical protein C1H46_037398 [Malus baccata])

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MGNHSKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYA 60
          MG   K LG+TGEFF+RRDEWRKHPMLSNQ RHATPGLGIALVAFG+YLVGEQVY RL A
Sbjct: 1  MGGSKKALGTTGEFFRRRDEWRKHPMLSNQLRHATPGLGIALVAFGVYLVGEQVYDRLVA 60

Query: 61 PPHASADH 69
          P  +S+ H
Sbjct: 61 PSPSSSHH 68

[Close]

BLAST of Sed0006374 vs. NCBI nr
Match: XP_002519364.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Ricinus communis] >EEF42981.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 6  KGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYAPP--- 65
          K LG+TGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVY +LYAP    
Sbjct: 3  KPLGTTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYDKLYAPSSSH 62

Query: 66 -HASADH 69
           H+S+ H
Sbjct: 63 HHSSSSH 69

[Close]

BLAST of Sed0006374 vs. ExPASy Swiss-Prot
Match: Q9M9R9 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B OS=Arabidopsis thaliana OX=3702 GN=At1g14450 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.8e-20
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 5  SKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYAPPHA 64
          +K LG+TGEFF+RRDEWRKHPMLSNQ RHA PGLGI + AF +YLVGEQ+Y +  AP  +
Sbjct: 2  AKPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGLGIGVAAFCVYLVGEQIYNKALAPSKS 61

Query: 65 SADH 69
          S  H
Sbjct: 62 SHHH 65

[Close]

BLAST of Sed0006374 vs. ExPASy Swiss-Prot
Match: O64725 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A OS=Arabidopsis thaliana OX=3702 GN=At2g02510 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-19
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 5  SKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYAPPHA 64
          +K LG+TGEFF+RRDEWRKHPMLSNQ RHA PG+GI + AF +YLVGEQ+Y++L AP   
Sbjct: 2  AKPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGIGIGVGAFCVYLVGEQIYSKLMAPSSQ 61

Query: 65 SA 67
          S+
Sbjct: 62 SS 63

[Close]

BLAST of Sed0006374 vs. ExPASy TrEMBL
Match: A0A2P5BY55 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_200640 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MGNHSKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYA 60
          M N+ K LG TGEFF+RRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVY +LYA
Sbjct: 1  MANYKKPLGPTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNKLYA 60

Query: 61 PPHASA 67
          P  +S+
Sbjct: 61 PSSSSS 66

[Close]

BLAST of Sed0006374 vs. ExPASy TrEMBL
Match: A0A803QYY0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MGNHSKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYA 60
          M N+ K LG+TGEFF+RRDEWRKHPML+NQFRHATPGLGIALVAFG+YL+GEQVY +LYA
Sbjct: 1  MANYKKPLGATGEFFRRRDEWRKHPMLTNQFRHATPGLGIALVAFGVYLIGEQVYDKLYA 60

Query: 61 PPHASADH 69
          P  +S  H
Sbjct: 61 PSSSSHTH 68

[Close]

BLAST of Sed0006374 vs. ExPASy TrEMBL
Match: A0A803QYY1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MGNHSKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYA 60
          M N+ K LG+TGEFF+RRDEWRKHPML+NQFRHATPGLGIALVAFG+YL+GEQVY +LYA
Sbjct: 1  MANYKKPLGATGEFFRRRDEWRKHPMLTNQFRHATPGLGIALVAFGVYLIGEQVYDKLYA 60

Query: 61 PPHASADH 69
          P  +S  H
Sbjct: 61 PSSSSHTH 68

[Close]

BLAST of Sed0006374 vs. ExPASy TrEMBL
Match: A0A2P5E5T4 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit OS=Trema orientale OX=63057 GN=TorRG33x02_233140 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MGNHSKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYA 60
          M N+ K LG TGEFF+RRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVY +LYA
Sbjct: 1  MANYKKPLGPTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNKLYA 60

Query: 61 PPHASA 67
          P  +S+
Sbjct: 61 PSSSSS 66

[Close]

BLAST of Sed0006374 vs. ExPASy TrEMBL
Match: B9S045 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1297890 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.5e-23
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 6  KGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYAPP--- 65
          K LG+TGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVY +LYAP    
Sbjct: 3  KPLGTTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYDKLYAPSSSH 62

Query: 66 -HASADH 69
           H+S+ H
Sbjct: 63 HHSSSSH 69

[Close]

BLAST of Sed0006374 vs. TAIR 10
Match: AT1G14450.1 (NADH dehydrogenase (ubiquinone)s )

HSP 1 Score: 98.2 bits (243), Expect = 2.7e-21
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 5  SKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYAPPHA 64
          +K LG+TGEFF+RRDEWRKHPMLSNQ RHA PGLGI + AF +YLVGEQ+Y +  AP  +
Sbjct: 2  AKPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGLGIGVAAFCVYLVGEQIYNKALAPSKS 61

Query: 65 SADH 69
          S  H
Sbjct: 62 SHHH 65

[Close]

BLAST of Sed0006374 vs. TAIR 10
Match: AT2G02510.1 (NADH dehydrogenase (ubiquinone)s )

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-20
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 5  SKGLGSTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYTRLYAPPHA 64
          +K LG+TGEFF+RRDEWRKHPMLSNQ RHA PG+GI + AF +YLVGEQ+Y++L AP   
Sbjct: 2  AKPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGIGIGVGAFCVYLVGEQIYSKLMAPSSQ 61

Query: 65 SA 67
          S+
Sbjct: 62 SS 63

The following BLAST results are available for this feature:

BLAST of Sed0006374 vs. NCBI nr


Match Name	E-value	Identity	Description
PON80906.1	2.7e-23	81.82	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit [Trema orientale]	[more]
XP_030498561.1	2.7e-23	76.47	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B-like [Cannabis sat...	[more]
PON53722.1	2.7e-23	81.82	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit [Parasponia andersonii...	[more]
XP_028949337.1	1.3e-22	77.94	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B-like [Malus domest...	[more]
XP_002519364.1	1.3e-22	82.09	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Ricinus communis]...	[more]

BLAST of Sed0006374 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9R9	3.8e-20	67.19	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B OS=Arabidopsis tha...	[more]
O64725	1.4e-19	67.74	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A OS=Arabidopsis tha...	[more]

BLAST of Sed0006374 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BY55	1.3e-23	81.82	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit OS=Parasponia anderson...	[more]
A0A803QYY0	1.3e-23	76.47	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803QYY1	1.3e-23	76.47	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2P5E5T4	1.3e-23	81.82	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit OS=Trema orientale OX=...	[more]
B9S045	6.5e-23	82.09	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1297890 PE=3 SV=1	[more]

BLAST of Sed0006374 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14450.1	2.7e-21	67.19	NADH dehydrogenase (ubiquinone)s	[more]
AT2G02510.1	1.0e-20	67.74	NADH dehydrogenase (ubiquinone)s	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012576	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3	PFAM	PF08122	NDUF_B12	coord: 17..56 e-value: 8.3E-7 score: 28.9
IPR012576	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3	PANTHER	PTHR15082	NADH-UBIQUINONE OXIDOREDUCTASE B12 SUBUNIT	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006374.1	Sed0006374.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005739	mitochondrion