Sed0006359 (gene) Chayote v1

Overview


Name	Sed0006359
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Gag/pol protein
Location	LG02: 37248143 .. 37248586 (+)
RNA-Seq Expression	Sed0006359
Synteny	Sed0006359

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGGTCTATATCTTGGCGAGTGTCTCGAACATTCTAGCCAAGAAACTAGAGAATATGGTAATTACTTTAGAGATAATGAGAGCCCTTCATAAGATGTTTGGGAAACCATCGTCTCAAGTAAAACATGATGCTCTCTGGGAAATTCATGGTGCTAAGATGAAGTCAGGAATGTTAGTGATGGAGCATGTGCTCCAGATGATGACATACTTCAACATGGGTGAAATGAATGGCGTTGTTATAGACGAAGCTATTCAGGTGAGAATTATTCTTAAGATGCTATCGAGTAGCTTCTTACAATTTAAAAGCAACGCTGTTATGAACAAGATTGCTTTTAACCCCACTATTCTTCTTAATGAACTTCAAACTTTTGAGTCTATGATGAAAGTCAAGGGAAAAGAAGGGAAGGCAAATGTTGTCACCAAGAATCAGAATTCTTGA

mRNA sequence

ATGGCAAGGGTCTATATCTTGGCGAGTGTCTCGAACATTCTAGCCAAGAAACTAGAGAATATGGTAATTACTTTAGAGATAATGAGAGCCCTTCATAAGATGTTTGGGAAACCATCGTCTCAAGTAAAACATGATGCTCTCTGGGAAATTCATGGTGCTAAGATGAAGTCAGGAATGTTAGTGATGGAGCATGTGCTCCAGATGATGACATACTTCAACATGGGTGAAATGAATGGCGTTGTTATAGACGAAGCTATTCAGGTGAGAATTATTCTTAAGATGCTATCGAGTAGCTTCTTACAATTTAAAAGCAACGCTGTTATGAACAAGATTGCTTTTAACCCCACTATTCTTCTTAATGAACTTCAAACTTTTGAGTCTATGATGAAAGTCAAGGGAAAAGAAGGGAAGGCAAATGTTGTCACCAAGAATCAGAATTCTTGA

Coding sequence (CDS)

ATGGCAAGGGTCTATATCTTGGCGAGTGTCTCGAACATTCTAGCCAAGAAACTAGAGAATATGGTAATTACTTTAGAGATAATGAGAGCCCTTCATAAGATGTTTGGGAAACCATCGTCTCAAGTAAAACATGATGCTCTCTGGGAAATTCATGGTGCTAAGATGAAGTCAGGAATGTTAGTGATGGAGCATGTGCTCCAGATGATGACATACTTCAACATGGGTGAAATGAATGGCGTTGTTATAGACGAAGCTATTCAGGTGAGAATTATTCTTAAGATGCTATCGAGTAGCTTCTTACAATTTAAAAGCAACGCTGTTATGAACAAGATTGCTTTTAACCCCACTATTCTTCTTAATGAACTTCAAACTTTTGAGTCTATGATGAAAGTCAAGGGAAAAGAAGGGAAGGCAAATGTTGTCACCAAGAATCAGAATTCTTGA

Protein sequence

MARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLVMEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQFKSNAVMNKIAFNPTILLNELQTFESMMKVKGKEGKANVVTKNQNS

Homology

[Close]

BLAST of Sed0006359 vs. NCBI nr
Match: KAA0046844.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK04489.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 8.4e-38
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 2   ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLV 61
           AR Y+LAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G LV
Sbjct: 69  ARAYLLASLSEVLAKKNESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNDGALV 128

Query: 62  MEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQFKSNAVMNKIAFNPTILLNE 121
            EHVL MM YFN+ EMNG VIDEA QV  IL+ L  SFLQF+SN VMNKIA+  T LLNE
Sbjct: 129 REHVLNMMVYFNVAEMNGAVIDEANQVSFILESLLESFLQFRSNVVMNKIAYTLTTLLNE 188

Query: 122 LQTFESMMKVKGKEGKANVVTKNQ 146
           LQTFES+MK+KG++G+ANV T  +
Sbjct: 189 LQTFESLMKIKGQKGEANVATSTR 212

[Close]

BLAST of Sed0006359 vs. NCBI nr
Match: KAA0046415.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 1.4e-37
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 2   ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLV 61
           AR YILAS+S +LA K E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V
Sbjct: 69  ARAYILASLSEVLAMKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASV 128

Query: 62  MEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQFKSNAVMNKIAFNPTILLNE 121
            EHVL MM +FNM EMNG VIDEA QV  IL+ LS SFLQF+SNAVMNKIA+  T +LNE
Sbjct: 129 REHVLNMMVHFNMAEMNGAVIDEASQVSFILESLSESFLQFRSNAVMNKIAYTLTTILNE 188

Query: 122 LQTFESMMKVKGKEGKANVVTKNQ 146
           LQTFES+MK+KG++G+ANV T  +
Sbjct: 189 LQTFESLMKIKGQKGEANVATSTR 212

[Close]

BLAST of Sed0006359 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-37
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 2   ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLV 61
           AR YILAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V
Sbjct: 69  ARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASV 128

Query: 62  MEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQFKSNAVMNKIAFNPTILLNE 121
            EHVL MM +FN+ EMNG VIDEA QV  IL+ L  SFLQF+SNAVMNKIA+  T LLNE
Sbjct: 129 REHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNE 188

Query: 122 LQTFESMMKVKGKEGKANVVTKNQ 146
           LQTFES+MK+KG++G+ANV T  +
Sbjct: 189 LQTFESLMKIKGQKGEANVATSTR 212

[Close]

BLAST of Sed0006359 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-37
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 2   ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLV 61
           AR YILAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V
Sbjct: 68  ARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASV 127

Query: 62  MEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQFKSNAVMNKIAFNPTILLNE 121
            EHVL MM +FN+ EMNG VIDEA QV  IL+ L  SFLQF+SNAVMNKIA+  T LLNE
Sbjct: 128 REHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNE 187

Query: 122 LQTFESMMKVKGKEGKANVVTKNQ 146
           LQTFES+MK+KG++G+ANV T  +
Sbjct: 188 LQTFESLMKIKGQKGEANVATSTR 211

[Close]

BLAST of Sed0006359 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-37
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 2   ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLV 61
           AR YILAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V
Sbjct: 69  ARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASV 128

Query: 62  MEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQFKSNAVMNKIAFNPTILLNE 121
            EHVL MM +FN+ EMNG VIDEA QV  IL+ L  SFLQF+SNAVMNKIA+  T LLNE
Sbjct: 129 REHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNE 188

Query: 122 LQTFESMMKVKGKEGKANVVTKNQ 146
           LQTFES+MK+KG++G+ANV T  +
Sbjct: 189 LQTFESLMKIKGQKGEANVATSTR 212

[Close]

BLAST of Sed0006359 vs. ExPASy TrEMBL
Match: A0A5D3C269 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001030 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.0e-38
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 2   ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLV 61
           AR Y+LAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G LV
Sbjct: 69  ARAYLLASLSEVLAKKNESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNDGALV 128

Query: 62  MEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQFKSNAVMNKIAFNPTILLNE 121
            EHVL MM YFN+ EMNG VIDEA QV  IL+ L  SFLQF+SN VMNKIA+  T LLNE
Sbjct: 129 REHVLNMMVYFNVAEMNGAVIDEANQVSFILESLLESFLQFRSNVVMNKIAYTLTTLLNE 188

Query: 122 LQTFESMMKVKGKEGKANVVTKNQ 146
           LQTFES+MK+KG++G+ANV T  +
Sbjct: 189 LQTFESLMKIKGQKGEANVATSTR 212

[Close]

BLAST of Sed0006359 vs. ExPASy TrEMBL
Match: A0A5A7TYF5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001600 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 6.9e-38
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 2   ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLV 61
           AR YILAS+S +LA K E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V
Sbjct: 69  ARAYILASLSEVLAMKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASV 128

Query: 62  MEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQFKSNAVMNKIAFNPTILLNE 121
            EHVL MM +FNM EMNG VIDEA QV  IL+ LS SFLQF+SNAVMNKIA+  T +LNE
Sbjct: 129 REHVLNMMVHFNMAEMNGAVIDEASQVSFILESLSESFLQFRSNAVMNKIAYTLTTILNE 188

Query: 122 LQTFESMMKVKGKEGKANVVTKNQ 146
           LQTFES+MK+KG++G+ANV T  +
Sbjct: 189 LQTFESLMKIKGQKGEANVATSTR 212

[Close]

BLAST of Sed0006359 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 9.0e-38
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 2   ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLV 61
           AR YILAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V
Sbjct: 69  ARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASV 128

Query: 62  MEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQFKSNAVMNKIAFNPTILLNE 121
            EHVL MM +FN+ EMNG VIDEA QV  IL+ L  SFLQF+SNAVMNKIA+  T LLNE
Sbjct: 129 REHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNE 188

Query: 122 LQTFESMMKVKGKEGKANVVTKNQ 146
           LQTFES+MK+KG++G+ANV T  +
Sbjct: 189 LQTFESLMKIKGQKGEANVATSTR 212

[Close]

BLAST of Sed0006359 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 9.0e-38
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 2   ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLV 61
           AR YILAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V
Sbjct: 69  ARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASV 128

Query: 62  MEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQFKSNAVMNKIAFNPTILLNE 121
            EHVL MM +FN+ EMNG VIDEA QV  IL+ L  SFLQF+SNAVMNKIA+  T LLNE
Sbjct: 129 REHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNE 188

Query: 122 LQTFESMMKVKGKEGKANVVTKNQ 146
           LQTFES+MK+KG++G+ANV T  +
Sbjct: 189 LQTFESLMKIKGQKGEANVATSTR 212

[Close]

BLAST of Sed0006359 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 9.0e-38
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 2   ARVYILASVSNILAKKLENMVITLEIMRALHKMFGKPSSQVKHDALWEIHGAKMKSGMLV 61
           AR YILAS+S +LAKK E+M+   EIM +L +MFG+ S Q+KHDAL  I+ A+M  G  V
Sbjct: 186 ARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASV 245

Query: 62  MEHVLQMMTYFNMGEMNGVVIDEAIQVRIILKMLSSSFLQFKSNAVMNKIAFNPTILLNE 121
            EHVL MM +FN+ EMNG VIDEA QV  IL+ L  SFLQF+SNAVMNKIA+  T LLNE
Sbjct: 246 REHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNE 305

Query: 122 LQTFESMMKVKGKEGKANVVTKNQ 146
           LQTFES+MK+KG++G+ANV T  +
Sbjct: 306 LQTFESLMKIKGQKGEANVATSTR 329

The following BLAST results are available for this feature:

BLAST of Sed0006359 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046844.1	8.4e-38	61.81	gag/pol protein [Cucumis melo var. makuwa] >TYK04489.1 gag/pol protein [Cucumis ...	[more]
KAA0046415.1	1.4e-37	61.81	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	1.9e-37	61.81	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.9e-37	61.81	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.9e-37	61.81	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0006359 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006359 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C269	4.0e-38	61.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G0010...	[more]
A0A5A7TYF5	6.9e-38	61.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]
A0A5A7SMH8	9.0e-38	61.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	9.0e-38	61.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	9.0e-38	61.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]

BLAST of Sed0006359 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..129 e-value: 9.8E-9 score: 35.1
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..141
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006359.1	Sed0006359.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0005488	binding