Sed0006343 (gene) Chayote v1

Overview


Name	Sed0006343
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Histone H2A
Location	LG07: 2683902 .. 2684787 (+)
RNA-Seq Expression	Sed0006343
Synteny	Sed0006343

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGTCTGGTTCGATCAAGGGCGGCCGTGGTAAACCGAAGGCGACGAAGTCTGTTTCGCGGTCTCATAAGGCCGGCCTTCAGTTTCCAGTCGGCCGTATTGCGCGGTTTCTCAAAGCCGGTAAGTATGCGGAGCGCGTCGGCGCCGGTGCTCCGGTCTACCTCTCCGCCGTGCTGGAATATCTCGCCGCCGAGGTTAGTTTTGATCTTCTCGTCGGATTTATGATCTGTTTATCTATGGAGATTTTGCATGCGATGGAGTAGTGTGTCGTATTGTTGTATTATGATCACTTACGCTGGATTTGTCGAATTTGATTTTGATTTGGAATCGTTCTGTTTCTTTTAGTAGATGTGATTGATTCAGACATTGATGAAGAATTTGGTTATGGTTTTGAAATTAGGGTTTGGTATTGCATGATAATGAAATACTTTACTGATCATTACATTCAGAATAGTAATCTTGAGCTTTGAGTTTTGGTATTCCTTTGCCTTTCCATTGCATCTAATTAGCTAAAAGTTTGAATACAGCTAAGTGAATATGATCAAAATTCAAAAGGTCCTAGATTTTGTTTCTTTATTCCTTGCATTAATGAAGTATTCACTGGGGTTCATCAATATACTTTTTGAAGTAGCTTTATACACTAGTAATCTTCATTTGCAGGTCCTTGAGCTTGCAGGCAATGCTGCTAGAGACAACAAGAAGAATCGGATTGTTCCGAGGCACATACAGCTTGCAGTCCGAAACGACGAGGAGCTGAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGGGTGTTGCCGAATATTCATCAAAATCTGTTGCCTAGGAAGGCCGGATCGGGCAAAGGCGACATTGGATCTGCATCACAGGAGTTCTGA

mRNA sequence

ATGAGTTCGTCTGGTTCGATCAAGGGCGGCCGTGGTAAACCGAAGGCGACGAAGTCTGTTTCGCGGTCTCATAAGGCCGGCCTTCAGTTTCCAGTCGGCCGTATTGCGCGGTTTCTCAAAGCCGGTAAGTATGCGGAGCGCGTCGGCGCCGGTGCTCCGGTCTACCTCTCCGCCGTGCTGGAATATCTCGCCGCCGAGGTCCTTGAGCTTGCAGGCAATGCTGCTAGAGACAACAAGAAGAATCGGATTGTTCCGAGGCACATACAGCTTGCAGTCCGAAACGACGAGGAGCTGAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGGGTGTTGCCGAATATTCATCAAAATCTGTTGCCTAGGAAGGCCGGATCGGGCAAAGGCGACATTGGATCTGCATCACAGGAGTTCTGA

Coding sequence (CDS)

ATGAGTTCGTCTGGTTCGATCAAGGGCGGCCGTGGTAAACCGAAGGCGACGAAGTCTGTTTCGCGGTCTCATAAGGCCGGCCTTCAGTTTCCAGTCGGCCGTATTGCGCGGTTTCTCAAAGCCGGTAAGTATGCGGAGCGCGTCGGCGCCGGTGCTCCGGTCTACCTCTCCGCCGTGCTGGAATATCTCGCCGCCGAGGTCCTTGAGCTTGCAGGCAATGCTGCTAGAGACAACAAGAAGAATCGGATTGTTCCGAGGCACATACAGCTTGCAGTCCGAAACGACGAGGAGCTGAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGGGTGTTGCCGAATATTCATCAAAATCTGTTGCCTAGGAAGGCCGGATCGGGCAAAGGCGACATTGGATCTGCATCACAGGAGTTCTGA

Protein sequence

MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPRKAGSGKGDIGSASQEF

Homology

[Close]

BLAST of Sed0006343 vs. NCBI nr
Match: XP_022150163.1 (histone H2AX [Momordica charantia])

HSP 1 Score: 260.4 bits (664), Expect = 9.0e-66
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSGS KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+KAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Sed0006343 vs. NCBI nr
Match: XP_022953583.1 (histone H2AX [Cucurbita moschata] >XP_022991732.1 histone H2AX [Cucurbita maxima] >XP_023548485.1 histone H2AX [Cucurbita pepo subsp. pepo] >XP_023548486.1 histone H2AX [Cucurbita pepo subsp. pepo] >KAG6575874.1 Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.1 bits (658), Expect = 4.4e-65
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS S KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+KAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Sed0006343 vs. NCBI nr
Match: XP_004148883.1 (histone H2AX [Cucumis sativus] >KGN44844.1 hypothetical protein Csa_016634 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 2.2e-64
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS S KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+KAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Sed0006343 vs. NCBI nr
Match: XP_008451417.1 (PREDICTED: histone H2AX [Cucumis melo] >KAA0057549.1 histone H2AX [Cucumis melo var. makuwa] >TYK18270.1 histone H2AX [Cucumis melo var. makuwa])

HSP 1 Score: 255.4 bits (651), Expect = 2.9e-64
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS S KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+KAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Sed0006343 vs. NCBI nr
Match: XP_038896927.1 (histone H2AX-like [Benincasa hispida])

HSP 1 Score: 255.4 bits (651), Expect = 2.9e-64
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS S KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+KAGS KGDIGSASQEF
Sbjct: 121 LPKKAGSSKGDIGSASQEF 139

[Close]

BLAST of Sed0006343 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.5e-63
Identity = 126/139 (90.65%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ + KGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+K G GKG+IGSASQEF
Sbjct: 121 LPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of Sed0006343 vs. ExPASy Swiss-Prot
Match: Q9S9K7 (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.6e-63
Identity = 126/138 (91.30%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 2   SSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + SG+ KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PRKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Sed0006343 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-62
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 2   SSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + SG+ KGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PRKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Sed0006343 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.1e-61
Identity = 126/139 (90.65%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSG+ KGGRGK K+TKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVL
Sbjct: 1   MSSSGA-KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+K+G  KG+IGSASQEF
Sbjct: 121 LPKKSGKDKGEIGSASQEF 138

[Close]

BLAST of Sed0006343 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.5e-58
Identity = 121/139 (87.05%), Postives = 126/139 (90.65%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+G   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSAGG-GGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+K G  K DIGSASQEF
Sbjct: 121 LPKKGGKDKADIGSASQEF 138

[Close]

BLAST of Sed0006343 vs. ExPASy TrEMBL
Match: A0A6J1D8Q1 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018409 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.3e-66
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSGS KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+KAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Sed0006343 vs. ExPASy TrEMBL
Match: A0A6J1JMN9 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488262 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.2e-65
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS S KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+KAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Sed0006343 vs. ExPASy TrEMBL
Match: A0A6J1GNQ0 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456077 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.2e-65
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS S KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+KAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Sed0006343 vs. ExPASy TrEMBL
Match: A0A0A0K7H2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390230 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS S KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+KAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Sed0006343 vs. ExPASy TrEMBL
Match: A0A5A7UVH7 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002130 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS S KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPRKAGSGKGDIGSASQEF 140
           LP+KAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Sed0006343 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 240.7 bits (613), Expect = 6.8e-64
Identity = 126/138 (91.30%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 2   SSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + SG+ KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PRKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Sed0006343 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-63
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 2   SSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + SG+ KGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PRKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Sed0006343 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 201.8 bits (512), Expect = 3.5e-52
Identity = 108/124 (87.10%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 10  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPRKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLP+KA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Sed0006343 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 201.8 bits (512), Expect = 3.5e-52
Identity = 108/124 (87.10%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 10  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPRKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLP+KA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

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BLAST of Sed0006343 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 198.4 bits (503), Expect = 3.9e-51
Identity = 107/129 (82.95%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MSSSGSIKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           M+  G   G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVL
Sbjct: 1   MAGRGKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  L
Sbjct: 61  EYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLL 120

Query: 121 LPRKAGSGK 130
           LP+KAG+ K
Sbjct: 121 LPKKAGASK 126

The following BLAST results are available for this feature:

BLAST of Sed0006343 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150163.1	9.0e-66	97.84	histone H2AX [Momordica charantia]	[more]
XP_022953583.1	4.4e-65	97.12	histone H2AX [Cucurbita moschata] >XP_022991732.1 histone H2AX [Cucurbita maxima...	[more]
XP_004148883.1	2.2e-64	96.40	histone H2AX [Cucumis sativus] >KGN44844.1 hypothetical protein Csa_016634 [Cucu...	[more]
XP_008451417.1	2.9e-64	96.40	PREDICTED: histone H2AX [Cucumis melo] >KAA0057549.1 histone H2AX [Cucumis melo ...	[more]
XP_038896927.1	2.9e-64	96.40	histone H2AX-like [Benincasa hispida]	[more]

BLAST of Sed0006343 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65759	2.5e-63	90.65	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
Q9S9K7	9.6e-63	91.30	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
O04848	2.1e-62	90.58	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
P35063	3.1e-61	90.65	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	5.5e-58	87.05	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]

BLAST of Sed0006343 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D8Q1	4.3e-66	97.84	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018409 PE=3 SV=1	[more]
A0A6J1JMN9	2.2e-65	97.12	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488262 PE=3 SV=1	[more]
A0A6J1GNQ0	2.2e-65	97.12	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456077 PE=3 SV=1	[more]
A0A0A0K7H2	1.1e-64	96.40	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390230 PE=3 SV=1	[more]
A0A5A7UVH7	1.4e-64	96.40	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002130 P...	[more]

BLAST of Sed0006343 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54690.1	6.8e-64	91.30	gamma histone variant H2AX	[more]
AT1G08880.1	1.5e-63	90.58	Histone superfamily protein	[more]
AT4G27230.1	3.5e-52	87.10	histone H2A 2	[more]
AT4G27230.2	3.5e-52	87.10	histone H2A 2	[more]
AT5G54640.1	3.9e-51	82.95	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 47..62 score: 84.58 coord: 62..75 score: 89.46 coord: 18..40 score: 69.77 coord: 76..90 score: 75.49 coord: 104..122 score: 70.48
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 7..127 e-value: 3.4E-76 score: 269.1
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 12..124 e-value: 4.20902E-67 score: 196.787
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 96..129 e-value: 5.5E-18 score: 64.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 3..131 e-value: 1.7E-62 score: 211.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 21..124
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 14..93 e-value: 1.6E-14 score: 54.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 4..137
None	No IPR available	PANTHER	PTHR23430:SF322	HISTONE H2A	coord: 4..137
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 26..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006343.1	Sed0006343.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity