Sed0006330 (gene) Chayote v1

Overview


Name	Sed0006330
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Coilin
Location	LG04: 4407006 .. 4417988 (-)
RNA-Seq Expression	Sed0006330
Synteny	Sed0006330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGATGGAGGATTTGTGTTGTCTCCATTTGAGTTGTTCTGTATCTTGAAGGTTAAGGACATTGTCAGGTTGGTTTGTGAGTGATATTTTGTATATGTGTATATTACGTTGTTTTTGTTTGCTGGAAATTAGAACTTTCTTTGTTCACCAGAGTGAAGGACAAGAAAAGTAAGGCAATCAGATTGATCGAAACTGAGCAATTCAGGGAGAGTAAACCGATGGAGTTTGATGGCTATGAGAGTGAACCAGAGGAAGATGAACCGAAATGTACAACAAAGTATGGACTCTGATATTTCTATGCATGTTGGCGACAACACTGATAGAAAATTTGATTATCTAGATACCCTTTTCTGGCATATAAGATGGGTATTTGGTCAACTGTCAACATGAGTCTTCTACTAAAATTGTTGCGGAGTTATCATGTTTTCTAGCATTACTTCCATGCTTTGACTTTATTTATAGTTTATACTTTTCGTGTTTCATCTTCTTTAACATAACCGAACTGGTTCATTTTACTTTTTGTTGTTCAACTTCTTTTCTTGGTGCTTATAAATCATAATTATGTAACTGTGATATTTTCTGTGGTACACCCTTTCAAGGATTATAGCATTACACCACTCTATTATCTCATTGGCATAGTTTTTTGTAATGATTTGGATTTTTTTGTAATTTTTCATCCATCAATGAAAGCTTACCATTTCCTTTCTGTAGTTAAGTTAAGTTCTACTTCATGCTTATAACTTTTTTCTGGTCCTTATTTCAACATTTTTGTAAATTACAGGAGGAAGAGAAATAAATCTTCCTGCATTGAAGAATTTCCAAAATTCCACCTATCATAGCAGTCGTCCAGTACGCTAATGAAAAGCACGAAGAAAACAATAATCTGAAGTCTGACCACCTGCAAAAAGTTCTAGTCAACGAAAATGATTTATCCAGCAATTCTAGTGAATCTAAATTGGATGCACGAAAGTACTGAAATTGATGGAAGAAGCAACTATACGTCAATTACCAATGCAGAGAGGTGGTTCCTGTTGCTTTCTTATAATATTAGCAATGAACTTCCAAGCTTCATGATTTTTCTTTATCTGATTTTTTATGACAGTGAACCTGCAAATTGAAATATTTAGCATCATTCTACTGATTCATTCTAATCCACACTTTAGATATTCGTATGTGCTTATCCCATAACATTTCATTAGTAGTTTGATCTGGGAATAGCCCGTTAATAGTGGCTGGATTTTGTTCTTTATTATTATTGTTGACAACTTGTCATACTTTGCTATGTTCCTTGGCCATGGGCCTATATGAATACTGAATATGATAATTGTTGTTGAAGATATTCCTGTATAGGCTCTATTTTAGTTTTTTATACTTTTGGAACATAGTTCTGGACTCTAGATGGAGATTAATAGCTATGTTAATATGTCATAAATAATTCAACATAGTGAAAAGCTTTTGGACCTTTTTTTGAAGATAAATATAAAAAAGTAATGTTCTTATTTATTTTTCATCGGTCTGCTTTTTTAGAAAAATGTCCTACAACTCGTGGTTGTTTAGGGTTGATCAACTTGGAGGTCGCGGGAGACATATTATCTGACACATCTGGTGAAAGTAAAAGGTACATATTTGTGGGAATTTATTATTAATAGTATCATATATTATTTGGCTTTAAAAATTGTGTTTATTTATTAGCAGTTTTTAATATTTTTAATTCTGATGAGCATCAGAACATAATTTGTTTGGTAGACAACGATTACCTGTAACTTGTCTTAGTTATACATATACTTCAGTGCTACATCTGCTATTATGATTAACTTACTGCTGCTCTAATTGATATACCAGTTTTGGTTCATTTTGATTTGACGAGAATTTAAATGTTGTATGTTTGTTTTTCTTCCTCTTTTCAACTTTGTTATTTCCTCTTGTTCGAAATTGGCAACAGGTGAAATATTTTAGAACTACATCCATTCAAAGGATTTTAATCCTTTTTCCCCTTTATTCAGAAAAATGATATAAAGCTTCAATTGCCTCGATCATTTATTTTATTTTGGTTTCCGAATTGCTATTCATGTACTCCCTCTTGTGTCCTTTAATTTTCTTTCCAGGGTCCTAATAGAAGTAGTCACTGTAAAAAGGCAAAGCGGTGTTGGTTGAGGGAAAAAGCTCAAGATGAGGAGGTATATTGATGCCGAAATATCAGTTTCTCACTGCTTATTGTATCTTGCCCCGGTGATATAAATTCCTTCTTACTGAAAAAATTTACCATGTATCTGATAGGCCTTGCCTAAAATTTTATTTATATCACCAGAATAATTGCCAAAACAGCACAAGATAACCTATAGGAATTGTAGAGTTCCTATTCTCTCCACAATTCTCTCGGTGAGAAATGTCCAGAACAGTCTAAATGCCAAAAGATCCCTTTACCTCACTCGCCTCTGCGTATGTAACAACTCCATCCCCATATAACTAACTCAGGACCCACCCCTAATGAATTCACAAGTCACTCTTATCTTTATTCTTTCCTCTCTTGCGATAGTACACTTTTTAATGGTTTATCAACCTTATCGGTATCAATTCTTGATTTTTACAGTTTGAACGTATGAAGCTAAAGTTCTACTTGGTCTCATCATACATATATTTCAGTGTGTATGTACTGATCTGAAGAATATGCTTGTGTGACTCAAAAAAAATATATGCTTGCCTAGAATTAGAATTTGGCACATATGTTCATAAGTCATAATTGTTTTGTGGCGTAGTCACCTGTTTTATTTTTATTTTTTATTCAGCAACAGCAGGAGTAATTTTTAAGACGTATTGATCAAGAAGCCAGTCAGAATGATGATGTTTATATGCACGATGATACTGTTCCTGTGATAGTTAAGCCAGGACACATTAGCTTCAAGCCAGTTGGAAAAGGTCTGAATCTGATGATTCTTTTTACTTTAGATACAGTATGAATCTGGTTGTGCACTGGTGGGAACAGTATTTTGTGAGGCCCAAAGGGGGTGGGGAAGTATCTTGCGCAGGCTTGCTCATTATATTGGTTTGATTTCAATTTTTTTTACATGGAATCACACTATTATGAATTCCTTGATTGCTCTTATAACATTACAGTTGCTGTGCATCAGGCGGGGGAGCAAAAGCAAAACCATTTCCTAAAGTTATCCATGCTGTTCCCATATCTTATTCTGCCTCTTGAAGTTCACAGTAGTCAATTATTATTGTTTTGTTATGCTTTAGGAGATATTGCATTGGAATGGCATAACCAAAAAGAAAAAAGGTCAGAAATGGGGCAAAGAGTAAACTCCATGTTGGAAGAGGAGTAACACTAGCAATTGTACTGACGAACCTCTTCAGTTGCCTATTTCTGAAAAGCAACCTACAATTCCGGCACCTGTAGTTGGCTCCATAAATTTTGATGAACTAAGACCGTGCACTGGTTTGCCTCAGGTTTGGCTTGCACTGTTAGATTCGTATGCTTGCTTAATTATGTGTTTAGTCGAGCATCAACGGCTTGCAAATTGGAATGTTCAAGTCATGTCGAAAGCTTTCATTAAGTTAAATGTTCATATCCAGATCCTAACTTTTTCTTGATGGCCAAATTCATAAGTCACATAATTTATATAGAATTTTTTGTTGTCAGCTACTTCTCATAGTTACAAAAATATGAAAATTTACTTGATAGTTATCTTACTTTTTTATTGATAATGCATGTCATGGGTTGGTCTAGTAGTCAAAGAGAGTCTTGAGAATTCAAGAGGTGATGAGTTCAATCCATGGTAGAAAAAAATAATTTTTTTAAGGGTTTCGTGACATCCGATTATCGTAGGATCAAACGATATGTTAAATAAGAATAGTTGAGGTGTGCGTAATGTAAGCCGACCCCAAACGCTCACAGATATTAAAAAAAATGTATGTCAAACGTGTTAAAGTGGTAGTATACGTGGACAATTAGAATTCGATTTTCTATGTTGTGTTTAATAAAAAAATGAATTCATTTAACTAGTATAGTCTTTTACTTCAGTATCCAAACATGATATATGTTACCATTTCCTGTGCATTATTTCTTGGATAAGCACAATCTGATTGTTTATTGAGTAGGATCTTGACAAAAAGACTGGTAAACCGTCTATTGTCTATCAGATCAATTAATAGTTGAATACTAAATTTATAAAAAATATATAACATATATTATTTATGTAATTGTAGTATTAATTAGTAAAACTATATATATTATAATATTCAGAATTTGTGTTTCATTTATTGCAGGAAGGTGATTTGTTGCATATCGTTTGATTGAGTTATCATCAACATGGACACCTGAGATTTCCTCCTTCCGAGTAAAGTTCATCTTCATTGTAATTTTCTGTTTGATTCTGATACGATCCCGGCATCATTAAAAGTATATTCGAGGCGGAGCAAGAAGTGAAGAATGAGCTATTTACTATTTTTATATATTTTATTATGCGAATTTAGGTTGTAATGGGCCTAAATAGAGTTATTTACAAAGTTAGGTTAAATCCTAGGAATGCTATAAATAGGCGGACTAGGTTACTCTTTTATCTATCGAATTATCATCATTGTATTGCGGCTCTTTGAGAGATTCTCTCGAGAGGTTTATCTTATTTTAATAGAAAAGTGTGGTAGATTCTATCATTTTGGTATCAGAGCCATTTACCGATCTGGGAATGGTAACTACCAAGATGGAGACTAGGGTTCAAGAGTGCGAATCGAGTGGTGCCGAGATGGTGAAGAAGCAACAGGAATTCGAGGTTCAACTGGCAGCGATGAATAGTGAGATAGGTCAAATTAACCTAAATATACAAAAGTTGCTAGAACGAACACCGGAACGGCCAGAAATCGAGGCAAGCGGTGCGGACAAAGGGAAGGGGGTGGGCTCGGCGGCTGGGTCAGGCGCGGAAGGCGTCGCAGGGGCCGAGGGGGACCGGGCGGCGGCGCAGGAGCGTGTGGCGACGGGTGGAAGAGGCTGGCGCATGAGGAGAGGTTGACGCCAAAGTCGTGGGCGAGCCTTGCTTGGGCCGAACGCGAAGTCGCGGGTTGTTAGAGGCGCAGTGCGGCGGCGTTAGGCGCGGAGGCGCTGGGGTCGTGCGACACAGGGCCGGGCGTGGGTGGTGCATGAGAGGCGGTGGGGCTCGGGAGGTGTCGGGGCGCGGCGAGGGTCGTGCGGCGTGCTTGGTCGAGCGTTAAGCACGCAGCGAGCGAGCGCATGATCCACGGGGCCGGGTCGGGTCGGGTTGTTCGGGTCGGGTCGGTCTGGGCCAATTGAGCGGGACCGGAGAGATAGATACCCGGATTTTGGCGATGAGAGTAACAGCTGGGGACCGGAAGGCGAGCGAAAGGTGGGCGGCGGGTCCACGAGTCACCGGAGAGGAGGAGTGCGCGATCGGTCATGACAGACCAATAGCGCCACGACGGTTGGAACGAACGTGGGTGGGATGGCTATAATCGAGAGGAGACCGGGAAGGCGGAGAGAGTGGGAGGATCGATATGAGCAGGAGGACCGAACATAGGAGAGAACGAAAGCGAGTCCGAGATTTGACAGGAGGTTACGGAAGCTCGAGATGCCGATTTTCAAAGGGTCTTACCGATGAGGATCCGGAAGGTTGGTTGTGTCGAGTGGAAGCGGTATTTTTGGGTTAACCGATTAAATGGGCGAGAACAGTCGACGCCGCGACATTGTGTATGGAGGGTGAGGCTCTGGAATGGCTGCAGTACGAGGAAGATCGATCGCCGATCAGTTCTTGGGAAGAATTTCGAGAGCTCCTGTTACACCGATTTCAACCTAGCATAAATGACAACAGGTACGCTAAGCTGATGAGTTTGCGACAAGAGGGCCTTTGTTAAAGAATATCGCGATTGTTTGAGAAATATGCTAAGGGAATGCGCGATATTAGTGTCAGTGCGTTAGAAGGGAAATGGGAGAGCGGTTTAAAAGAAGAAATAAGGAGTGAAATGAGAAAATTGCGACCCGTAGGAATACAAGATAAAAAGTTCATGGCACAAGTAATTGAGGATGATCTGGCTTTCCGAGCACTAGGAAAAGGGGTGAGCCCGGGACTAGTGAACAGAACAAGTGTGGGATCCGGACTTGTTAGTACGAAGGGAACGGGTGTTGCAACTATGAGAACGACTACGTTCTCAACGTCTAAACCAATTACAAACAGTACAACAACCACTACGCCGTATAAGCGTTTGACAGACAGTAAAATCCGTGTCAGGAAGGATAAGGGGTTGTGTTTCCGTTGCGACGAGAGAGATTTGTGCCCGGGCACCGATGCAAAAAGAAAGAACTTCAGTCTTTGGAGATATTGGTAGTACGCGACACCTATGACCACGAGGATTCGTACGAAAATGATGAGGCACTGGAGGATGAAACTGTTGTGGATTCGGGCGATACAAGGGATTTAGCGGCATTGTCCTTAAACTCCTTGGCGGGGCTGAGTTCGCCGAAGACTTTGAAAGTCACTGGATTTATTCAGGGGTTGGAGGTAGTAGTTTTGATAGATTGTGGAGCCACCCATAACTTTATTTCTGACGTCATTGTGGAAAAGTTAAAGTTACCGATAGAGCCCTCAAATGATTATGGCATCATGTTGGGAACCGGCGAATCTGTGAGAACGGCGGGAATCTGTAAAAATGTCGTGCTACACACAGGTTTGAATTGAAAGTGGTAAATGAATTCCTACCTTTACCTTTAGGTAGCGCAGATGTGATTTTGGGGGTGGCATGGCTAGAAACATTGGGAAGGATAGAATTCAATTTCAATTCCCTGAAGATGCGGTTTGTGTTGGGGTCTGCGCAGCACTGCAAGGGGACCCCCGGTTGGTCAAGGCTCAAGTATCCTTGAAATCCATGATGAAATCCTTACGTCCTGAGGACCAAGGGTTACTGGTTGAGTTGAACATGTGTGAGGTGACAACATAGGATTGTGGACCAACCAAGATGCTCCCGGATTTATCGCAGGTACCTCGAGAGCTTCACTCTTTAATTGAATCTTTTTCATCGGTTTTTCAATCCTTGGCAGATTTACCTCCTGAAAGAAACTGTGATCATGCGATTGAATTGATTGCGGGGACGAACTCAGTGAATGTAAAGCCATACACAGTACCCCCAATATAAAAAAAACGAGATAGAAAAACTAGTACGGGAAATGTCGTTAGCCGGGGTAATTCGCCCTAGCACGAGTTCTTTCTCTAGCCCTGTTTTGTTAGTGAAAAAGAAGGATGGAAGTTGGCGTTTCTGTGTCGATTACCGTGCCTTAAACCAAGCTACAGTACCGGATAAATACCCGATACCGCTGGTGGATGAATTGTTGGATGAGCTTCATGGCGCTTGTTTTTCGAAAATTGATCTAAAAAAATTTGGATATCACCAAATTCGTGTCAAACCGACCGACATATACAAGACAACTTTTCGAACGCATGAAGGACATTACGAGTTTGTAGTCATGCCTTTTGGGTTGCGGAATGCTCCGGCTACGTTCCAGTCTGTGATGAATGAGATTTTGCGGTCGTATCTGCGTAAGTTCGTCTTTGGTATTTTTGATGACATTTTGATTTCTGAGATGACTATTCAGAACACAGGAGCACTGGCTCGTGTTTTTGAGTCTTTGCAGCAAATGCTTTAAATCGCAAATGCGAAGAAGTGCCAATTTGGGTTGCAACGTATTGAGTACTTAGGGCACTTTATATATGTGGAAGGCGTCTGCGTGGGCGGCAAAGATCACGGCGATGATAGAGTGGCCAAGTCCTCGAAATATTCGGGACCTCCGAGGATTCCTGGGGTTGACCGGATACTATCGACGATTTGTGGCTAACTACGGTTCCATGGCTTTTCCGTTGACCCAGTTATTAAAGAAAGGGAAGTTTGAGTGGGGACCGACTGCCGAAGACAGTTTTCAGAGACTGAAACATGCTATGAGTAGTGTCCCGGTCCTACGATTGCCAGATTTTGACCAAGTATTTGTGGTCGAAACCGATGCTTCGGGCATCGGGGTGGGAGCAGTTCTGATGCAACAGGGTCAACCGATAGCATATTTTAGCAAGGCATTGCCAATTACTCATCGGGTGAAATCGGTATATGAACGTGAACTGATGGCAATCGTTTTCGCGGTGCAGTGATGGCGGGCCTATCTGTTAGGGCATCACTTTGTCGTTCGCACTGATCAGAAGAGTCTGAAATTTCTTCTTGAGCAGCGTGTAGTGGATGGCGACTATCAGCGATGGATTGCGAAATTAATGGGATATGATTTCAGCATCGAATATAAGAAGGGCCTCGAAAATAGAGCCGCGGATGCTTTGTCACGAATGCCCGAGAAATGCGAGCTTGGCATGCTGAGTGTGGTGGCGGGTATTAAATACCGCCGTATTTACACAACAGGTTAAAGAGGATGCGAAGCTGATGGAAATTTATAAGTCAGTGACCGCTGGCGAGGGGGGCCCTCCGGGATACTCAGTAGTTGGTGAGGTGTTGCTTTATCAGGGTAGGCTTGTTTTGCCTCCGACATCCCCAACGATTCCTCTACTTTTGCTTGAATTCCATAGTGGTGCTATTGGGGACATTTTGAGTCCTTAAAACTTATCGGTAGCTTGGCTAAGGAAGTGTATTGGCAAGGAATGAAGGCTCGTGTGCGTTCCTTTGTGGCGAATGCTCTATCGTGTTCAAGCTAAACACCTATCTTTATCTCCTGCGGGGTTGCTACAACCTTTGCCGATCCTGCGCAGTGCAGGAAGATATTTCGATGGACTTTGTGGAAGGTTTACCGCGATCCGAGGGTTATGACACTATCTTTGGTGGTGGTTGACCGTCTGTCCAAATATTCTCATTTCATACCTCTTCGACACCCGTTTTCTTCCTTGTCGGTGTCAAAGGTGTTTATCAAGGAGATCGTTCGGTTGCATGGGATTCCGAAAAGTATTGTATCCGACCGCGATAAGGTTTTTACAAGTTTGCTTTGGGAAGAGATGTTCAAGGCTCACGGCACTAAACTTTGTCGGAGCACCACTTACCATCCACTGGTGATGGGCGCATCGAGGTGGTGAATCGTTGTTTGGAATCCTATTTGAGATGTTTTGTGATGCATCATCCTAAGGCGTGGTACCAATGGTTGTCCTGGGCGGAGTACAGCTTTAACACTTCTTTCCACTCATCCACGGGTATGACACCTTTCGAGATTATTTATGGCAGACCCCCTCCTACCCTGTTGGGTTATGATCACGGAGTTAGCCCGGTGGCGTCTGTGGATTCAATGATGAAGGATCGTGATCGGATCTTGGCCACCTTAAAGGCTAGCTTGTCGCGAGCGCAGCAATCTATGGCGGATCGCGCAAACGCAAAACGTAGGGATGTACAGTTTAATATTGATGATCTGGTGTATATCAAGCTTCGACCATACCGCCAATCTTCTTTGGCTAAATTTCAACACCCGAAAAGTGGCGCCGAGGTTTATTGGGCCCTACCGTGTCCTTGGCTCGAGTGGGTCCTGTTGCTTATCGTTTGGAACTATCGCCGGCAGTTAAGATTCACCCGGTTTTTCACGTGTCAGTTCTGCGTAAAGCGGGAGACTCGTCGGTTATTGTCATGTCTACACCGTCCTTGGTGGGAGATGATCTGTGCATGGTGGTTCGCCTTAAGGCTGTGTTGGGCGTCCAAGAGAATTTACACGCGGCCGGATCGCGTCAAGTTTTGGTTCAATGGGAAGGCTCCACACCAGAGGATGCGACTTGGGAATCCGCGGCTGATTTGGAATTGCAATTTCCGGACTTTCACCTTGAGGACAAGGTGGCTCTGTGGGGAGGAAGCATTGATACGATCCCGGCATCATTAAAAGTATATTCGAGGCGGAGCAAGAAGTGAAGAATGAGCTATTTACTATTTTAATGTATTTTATTATGCGAATTTAGGTTGTAATGGGCCTAAATAGAGTTATTTACAAAGTTAGGTTAAATCCTAGGAATGCTATAAATAGGCGGACTAGATTACTCTTTTATCTATCGAATTATCATCATTGTATTGCGGCTCTTTGAGAGATTCTCTCGAGAGGTTTATCTTATTTTAATAGAAAAGTGTGGTAGATTCTATCAGATTCCTTGTTTCCACAGCCTACATGTTATTCTATTTCATTTTCTCATTTCAGGCTGGAAAAGTATCATGGTACGACATTGCATCCAATCGAATTATGCTAATACCAGTTCTAGAATACCCAGTACCTGTGAAAAAGGAGATAGACGAGGATTCTGCATCACAGCTAGACCACAACCCCATATGCGGAAAACGGCTCTTTAAAGGTATAGCGCCAAGCATAATCTTTGGTTTGCCATCATCTAAAAATATTTCCCGTCCAATTCGACACGTAGTCAAAGTATTTCATTCATATAATAAGTTAAACAATCAGGTATCGTTTGTGTTCACCTGTGTTCTTTGTAAGCAGTGGAATAGTTATTTATAGGAACAGCTAATTCTAGAATCATACTGACAAATGGAGATCTTCAACAGACAGATTTTGCCTCTCTTGTTGATCTTCTGCTAATCAGGCAAGGAAACTTGAATTCTCCAAAAACTACAGTTAACCAGGAAATCGCTTCTGCTAAACAAAGTGCAGAAAGTTCCAAACGCATCCATAACAATGGAAATGCCAACGACACTAAACAAGGTATCTATTATAGTTTGTGGCCGTACTAGTAGTTTACTAGGTTGCTTTTAATGGGCTATTGCCTATTTTATGATTAGTCTTCACTCTTCAGGTAAAGTAGGTGCATGGGATGAAATGAGCGAGGCTCTGAGTGCAAAGTAGCAGAACTTTCTAAGAATGATGGTTGGAGACGAGAAGTAAGTTCAGTAAGGCCAGATGGTTCCAATCAAGAAGAAAGTTCAGGAAGGAGGTCATGGTCCTATAGGGAGCTTAGAGGAAGCCCCCTCAGTCCAATAATGGCTCTATTAAGCGCTCAGAAAGATATCTAA

mRNA sequence

ATGGTAGATGGAGGATTTGTGTTGTCTCCATTTGAGTTGTTCTGTATCTTGAAGGTTAAGGACATTGTCAGAGTGAAGGACAAGAAAAGTAAGGCAATCAGATTGATCGAAACTGAGCAATTCAGGGAGAGTAAACCGATGGAGTTTGATGGCTATGAGAGTGAACCAGAGGAAGATGAACCGAAATGTACAACAAAAATTTCCAAAATTCCACCTATCATAGCAGTCGTCCAGTACGCTAATGAAAAGCACGAAGAAAACAATAATCTGAAGTCTGACCACCTGCAAAAAGTTCTAGTCAACGAAAATGATTTATCCAGCAATTCTAGTGAATCTAAATTGGATGGTCCTAATAGAAGTAGTCACTGTAAAAAGGCAAAGCGGTGTTGGTTGAGGGAAAAAGCTCAAGATGAGGAGAATGATGATGTTTATATGCACGATGATACTGTTCCTGTGATAGTTAAGCCAGGACACATTAGCTTCAAGCCAGTTGGAAAAGTTGCTGTGCATCAGGCGGGGGAGCAAAAGCAAAACCATTTCCTAAAGTTATCCATGCTGTTCCCATATCTTATTCTGCCTCTTGAAGAGATATTGCATTGGAATGGCATAACCAAAAAGAAAAAAGGTCAGAAATGGGGCAAAGACAATTGTACTGACGAACCTCTTCAGTTGCCTATTTCTGAAAAGCAACCTACAATTCCGGCACCTGTAGTTGGCTCCATAAATTTTGATGAACTAAGACCGTGCACTGGTTTGCCTCAGGCTGGAAAAGTATCATGGTACGACATTGCATCCAATCGAATTATGCTAATACCAGTTCTAGAATACCCAGTACCTGTGAAAAAGGAGATAGACGAGGATTCTGCATCACAGCTAGACCACAACCCCATATGCGGAAAACGGCTCTTTAAAGATCTTCAACAGACAGATTTTGCCTCTCTTGTTGATCTTCTGCTAATCAGGCAAGGAAACTTGAATTCTCCAAAAACTACAGTTAACCAGGAAATCGCTTCTGCTAAACAAAGTGCAGAAAGTTCCAAACGCATCCATAACAATGGAAATGCCAACGACACTAAACAAGGTAAAGTAGGTGCATGGGATGAAATGAGCGAGGCTCTGAGTGCAAAACGAGAAGTAAGTTCAGTAAGGCCAGATGGTTCCAATCAAGAAGAAAGTTCAGGAAGGAGGTCATGGTCCTATAGGGAGCTTAGAGGAAGCCCCCTCAGTCCAATAATGGCTCTATTAAGCGCTCAGAAAGATATCTAA

Coding sequence (CDS)

ATGGTAGATGGAGGATTTGTGTTGTCTCCATTTGAGTTGTTCTGTATCTTGAAGGTTAAGGACATTGTCAGAGTGAAGGACAAGAAAAGTAAGGCAATCAGATTGATCGAAACTGAGCAATTCAGGGAGAGTAAACCGATGGAGTTTGATGGCTATGAGAGTGAACCAGAGGAAGATGAACCGAAATGTACAACAAAAATTTCCAAAATTCCACCTATCATAGCAGTCGTCCAGTACGCTAATGAAAAGCACGAAGAAAACAATAATCTGAAGTCTGACCACCTGCAAAAAGTTCTAGTCAACGAAAATGATTTATCCAGCAATTCTAGTGAATCTAAATTGGATGGTCCTAATAGAAGTAGTCACTGTAAAAAGGCAAAGCGGTGTTGGTTGAGGGAAAAAGCTCAAGATGAGGAGAATGATGATGTTTATATGCACGATGATACTGTTCCTGTGATAGTTAAGCCAGGACACATTAGCTTCAAGCCAGTTGGAAAAGTTGCTGTGCATCAGGCGGGGGAGCAAAAGCAAAACCATTTCCTAAAGTTATCCATGCTGTTCCCATATCTTATTCTGCCTCTTGAAGAGATATTGCATTGGAATGGCATAACCAAAAAGAAAAAAGGTCAGAAATGGGGCAAAGACAATTGTACTGACGAACCTCTTCAGTTGCCTATTTCTGAAAAGCAACCTACAATTCCGGCACCTGTAGTTGGCTCCATAAATTTTGATGAACTAAGACCGTGCACTGGTTTGCCTCAGGCTGGAAAAGTATCATGGTACGACATTGCATCCAATCGAATTATGCTAATACCAGTTCTAGAATACCCAGTACCTGTGAAAAAGGAGATAGACGAGGATTCTGCATCACAGCTAGACCACAACCCCATATGCGGAAAACGGCTCTTTAAAGATCTTCAACAGACAGATTTTGCCTCTCTTGTTGATCTTCTGCTAATCAGGCAAGGAAACTTGAATTCTCCAAAAACTACAGTTAACCAGGAAATCGCTTCTGCTAAACAAAGTGCAGAAAGTTCCAAACGCATCCATAACAATGGAAATGCCAACGACACTAAACAAGGTAAAGTAGGTGCATGGGATGAAATGAGCGAGGCTCTGAGTGCAAAACGAGAAGTAAGTTCAGTAAGGCCAGATGGTTCCAATCAAGAAGAAAGTTCAGGAAGGAGGTCATGGTCCTATAGGGAGCTTAGAGGAAGCCCCCTCAGTCCAATAATGGCTCTATTAAGCGCTCAGAAAGATATCTAA

Protein sequence

MVDGGFVLSPFELFCILKVKDIVRVKDKKSKAIRLIETEQFRESKPMEFDGYESEPEEDEPKCTTKISKIPPIIAVVQYANEKHEENNNLKSDHLQKVLVNENDLSSNSSESKLDGPNRSSHCKKAKRCWLREKAQDEENDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLFPYLILPLEEILHWNGITKKKKGQKWGKDNCTDEPLQLPISEKQPTIPAPVVGSINFDELRPCTGLPQAGKVSWYDIASNRIMLIPVLEYPVPVKKEIDEDSASQLDHNPICGKRLFKDLQQTDFASLVDLLLIRQGNLNSPKTTVNQEIASAKQSAESSKRIHNNGNANDTKQGKVGAWDEMSEALSAKREVSSVRPDGSNQEESSGRRSWSYRELRGSPLSPIMALLSAQKDI

Homology

[Close]

BLAST of Sed0006330 vs. NCBI nr
Match: XP_022956914.1 (coilin [Cucurbita moschata])

HSP 1 Score: 436.8 bits (1122), Expect = 2.1e-118
Identity = 288/562 (51.25%), Postives = 324/562 (57.65%), Query Frame = 0


Query: 5   GFVLSPFELFCILKVKDIVRVKDKKSKAIRLIETEQFRESKPM--------------EFD 64
           GFVL PFE  CILK KDIVRVK KKSKAI+     +FRE K +              E D
Sbjct: 65  GFVLPPFESVCILKDKDIVRVKKKKSKAIK-----EFREKKLVDEGVKLLADKEFENESD 124

Query: 65  GYESEPEEDEPKCT---------TKISK-----------------------IPPIIAVVQ 124
           GYESEPEEDEP+ T          K+SK                        P IIA VQ
Sbjct: 125 GYESEPEEDEPQATLPVTTAPVEKKVSKKRKASKITPNSKRKKTKSSRTEEFPSIIADVQ 184

Query: 125 YANEKHEENNNLKSDHLQKVLVNENDLSSNSSE-------------------------SK 184
            AN+KHEE N+LK +  QKV+V +ND S +SSE                          +
Sbjct: 185 PANKKHEERNHLKFELPQKVVVRKNDSSRSSSECQSHSLKIIEIDGRSNNIIKSTANAER 244

Query: 185 LD--------------------GPNRSSHCKKAKRCWLREKAQDEE-------------- 244
           +D                    GP+RS+  KKAKR WLRE+AQ EE              
Sbjct: 245 VDQLGVGGRKVELSDTAGENKKGPSRSTRRKKAKRQWLRERAQSEEQQQQLFETSIYQGP 304

Query: 245 --NDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLFPYLILPLEEI 304
             NDDV M +DTVPV+VKPGHI F+PVGKVA   AG+QKQNHF K             E 
Sbjct: 305 SHNDDVDMDEDTVPVVVKPGHIRFEPVGKVAADPAGQQKQNHFPK-------------ET 364

Query: 305 LHWNGITKKKKGQKWGKD-----------NCTDEPLQLPISE-KQPTIPAPVVGSINFDE 364
           LHWNGIT KKKGQKWGK+           +CTDEPLQLP SE +QPT PAPVVG INFDE
Sbjct: 365 LHWNGITNKKKGQKWGKEKTPSWKRNNSNSCTDEPLQLPTSETEQPTTPAPVVGPINFDE 424

Query: 365 LRPCTGLPQ------------------------AGKVSWYDIASNRIMLIPVLEYPVPVK 422
           LRPCTGLPQ                        AGKV+WYDI SNRIML+PV EYP+PVK
Sbjct: 425 LRPCTGLPQEGDLVAYRLIELSSTWTPEISSFRAGKVAWYDIESNRIMLVPVPEYPLPVK 484

[Close]

BLAST of Sed0006330 vs. NCBI nr
Match: KAG6601546.1 (Coilin, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434.9 bits (1117), Expect = 8.0e-118
Identity = 289/562 (51.42%), Postives = 322/562 (57.30%), Query Frame = 0


Query: 5   GFVLSPFELFCILKVKDIVRVKDKKSKAIRLIETEQFRESKPM--------------EFD 64
           GFVL PFE  CILK KDIVRVK KKSKAI+     +FRE K +              E D
Sbjct: 65  GFVLPPFESVCILKDKDIVRVKKKKSKAIK-----EFREKKLVDEGVKLLADKEFENESD 124

Query: 65  GYESEPEEDEPKCT---------TKISK-----------------------IPPIIAVVQ 124
           G ESE EEDEPK T          K+SK                        P IIA VQ
Sbjct: 125 GCESESEEDEPKATLPVTAAPVEKKVSKKRKASKITPNSKRKKTKSSRTEEFPSIIADVQ 184

Query: 125 YANEKHEENNNLKSDHLQKVLVNENDLSSNSSE-------------------------SK 184
            AN+KHEE N+LKSD  QKV+V +ND S +SSE                          +
Sbjct: 185 PANKKHEERNHLKSDLPQKVVVRKNDSSRSSSECQSHSLKIIEIDGRSNNIIKSTANAER 244

Query: 185 LD--------------------GPNRSSHCKKAKRCWLREKAQDEE-------------- 244
           +D                    GP+RS+  KKAKR WLRE+AQ EE              
Sbjct: 245 VDQLGVGGKKVELSDTAGENKKGPSRSTRRKKAKRQWLRERAQSEEQQQQLFETSIDQGP 304

Query: 245 --NDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLFPYLILPLEEI 304
             NDDV M +DTVPV+VKPGHI F+PVGKVA   AG+QKQNHF K             E 
Sbjct: 305 SHNDDVDMDEDTVPVVVKPGHIRFEPVGKVAADPAGQQKQNHFPK-------------ET 364

Query: 305 LHWNGITKKKKGQKWGKD-----------NCTDEPLQLPISE-KQPTIPAPVVGSINFDE 364
           LHWNGIT KKKGQKWGK+           +CTDEPLQLP SE  QPT PAPVVG INFDE
Sbjct: 365 LHWNGITNKKKGQKWGKEKTPSWKRNNSNSCTDEPLQLPTSETDQPTTPAPVVGPINFDE 424

Query: 365 LRPCTGLPQ------------------------AGKVSWYDIASNRIMLIPVLEYPVPVK 422
           LRPCTGLPQ                        AGKV+WYDI SNRIML+PV EYP+PVK
Sbjct: 425 LRPCTGLPQEGDLVAYRLIELSSTWTPEISSFRAGKVAWYDIESNRIMLVPVPEYPLPVK 484

[Close]

BLAST of Sed0006330 vs. NCBI nr
Match: TYK15659.1 (coilin isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 433.3 bits (1113), Expect = 2.3e-117
Identity = 279/543 (51.38%), Postives = 318/543 (58.56%), Query Frame = 0


Query: 5   GFVLSPFELFCILKVKDIVRVKDKKSKAI------RLIETEQFRESKPM----------- 64
           GFVL PFE  CILK +DIVRVK KKSKA       RLIETE+FRE KP+           
Sbjct: 65  GFVLPPFESVCILKDRDIVRVKKKKSKATILGEGDRLIETEEFRERKPVDNGVKFLADKE 124

Query: 65  ---EFDGYESEPEEDEPKCT---------TKISK-----------------------IPP 124
              E +GYES+ EEDE   T          K+SK                        P 
Sbjct: 125 FENESNGYESQSEEDETNATLPVKAVPVGKKVSKKRKASKIIHNSKRKKNKSSPTEEFPT 184

Query: 125 IIAVVQYANEKHEENNNLKSDHLQKVLVNENDLSSNSSESKLD----------------- 184
           IIA V++ +EKHEE N+LKS+  QKVLV++ D SS+SSE   D                 
Sbjct: 185 IIADVRHTDEKHEERNHLKSNLPQKVLVSKKDSSSSSSECDSDTSSSIEIGGKSNNIIKS 244

Query: 185 ----------------------------GPNRSSHCKKAKRCWLREKAQDEE-------- 244
                                       GP+RS+  KKAKR WLRE+AQ+EE        
Sbjct: 245 TTNAERVDQLGAGRTHVELSDTAGESKKGPSRSTRRKKAKRRWLRERAQNEEQQQQLFET 304

Query: 245 --------NDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLFPYLI 304
                   NDDV M DDTVPV+VKPGHI F+PVGKV   QAG++K+NHF K         
Sbjct: 305 NLDQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKENHFPK--------- 364

Query: 305 LPLEEILHWNGITKKKKGQKWGKDN-----------CTDEPLQLPISEKQPTIPAPVVGS 364
               E LHWNGIT KKKGQKWGK+            CT EPLQL    +QP  P PVVGS
Sbjct: 365 ----ETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPLQLLSETEQPKTPVPVVGS 424

Query: 365 INFDELRPCTGLPQAGKVSWYDIASNRIMLIPVLEYPVPVKKEIDEDSASQLDHNPICGK 422
           INFDELRP TGLPQAGKVSWYD  SNRIMLIPV EYP+PVKKEIDEDS  Q D  P    
Sbjct: 425 INFDELRPYTGLPQAGKVSWYDTESNRIMLIPVPEYPIPVKKEIDEDSELQSDTTPYGED 484

[Close]

BLAST of Sed0006330 vs. NCBI nr
Match: KAG7032318.1 (Coilin [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 432.6 bits (1111), Expect = 4.0e-117
Identity = 288/562 (51.25%), Postives = 321/562 (57.12%), Query Frame = 0


Query: 5   GFVLSPFELFCILKVKDIVRVKDKKSKAIRLIETEQFRESKPM--------------EFD 64
           GFVL PFE  CILK KDIVRVK KKSKAI+     +FRE K +              E D
Sbjct: 65  GFVLPPFESVCILKDKDIVRVKKKKSKAIK-----EFREKKLVDEGVKLLADKEFENESD 124

Query: 65  GYESEPEEDEPKCT---------TKISK-----------------------IPPIIAVVQ 124
           G ESE EEDEPK T          K+SK                        P IIA VQ
Sbjct: 125 GCESESEEDEPKATLPVTAAPVEKKVSKKRKASKITPNSKRKKTKSSRTEEFPSIIADVQ 184

Query: 125 YANEKHEENNNLKSDHLQKVLVNENDLSSNSSE-------------------------SK 184
            AN+KHEE N+LKSD  QKV+V +ND S +SSE                          +
Sbjct: 185 PANKKHEERNHLKSDLPQKVVVRKNDSSRSSSECQSHSLKIIEIDGRSNNIIKSTANAER 244

Query: 185 LD--------------------GPNRSSHCKKAKRCWLREKAQDEE-------------- 244
           +D                    GP+RS+  KKAKR WLRE+AQ EE              
Sbjct: 245 VDQLGVGGKKVELSDTAGENKKGPSRSTRRKKAKRQWLRERAQSEEQQQQLFETSIDQGP 304

Query: 245 --NDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLFPYLILPLEEI 304
             NDDV M +DTVPV+VKPGHI F+PVGKVA   AG+QKQNHF K             E 
Sbjct: 305 SHNDDVDMDEDTVPVVVKPGHIRFEPVGKVAADPAGQQKQNHFPK-------------ET 364

Query: 305 LHWNGITKKKKGQKWGKD-----------NCTDEPLQLPISE-KQPTIPAPVVGSINFDE 364
           LHWNGIT KKKGQKWGK+           +CTDEPLQLP SE  QPT PAPVVG INFDE
Sbjct: 365 LHWNGITNKKKGQKWGKEKTPSWKRNNSNSCTDEPLQLPTSETDQPTTPAPVVGPINFDE 424

Query: 365 LRPCTGLPQ------------------------AGKVSWYDIASNRIMLIPVLEYPVPVK 422
           LRPCTGLPQ                        AGKV+WYDI SNRIML+PV EYP+PVK
Sbjct: 425 LRPCTGLPQEGDLVAYRLIELSSTWTPEISSFRAGKVAWYDIESNRIMLVPVPEYPLPVK 484

[Close]

BLAST of Sed0006330 vs. NCBI nr
Match: XP_023539699.1 (coilin [Cucurbita pepo subsp. pepo])

HSP 1 Score: 431.4 bits (1108), Expect = 8.9e-117
Identity = 284/562 (50.53%), Postives = 322/562 (57.30%), Query Frame = 0


Query: 5   GFVLSPFELFCILKVKDIVRVKDKKSKAIRLIETEQFRESKPM--------------EFD 64
           GFVL PFE  CILK KDIVRVK KKSKAI+     +FRE K +              E D
Sbjct: 65  GFVLPPFESVCILKDKDIVRVKKKKSKAIK-----EFREKKLVDEGVKLLADKEFENEPD 124

Query: 65  GYESEPEEDEPKCT--------------------------------TKISKIPPIIAVVQ 124
           G ESE EEDEPK T                                ++I + P IIA VQ
Sbjct: 125 GCESESEEDEPKATLPVKAAPVEKKVSKKRKASNITPNSKRKKTKSSRIEEFPSIIADVQ 184

Query: 125 YANEKHEENNNLKSDHLQKVLVNENDLSSNSSE-------------------------SK 184
            AN+KHEE N+LKSD  QKV+V +ND S +SSE                          +
Sbjct: 185 PANKKHEERNHLKSDLPQKVVVRKNDSSRSSSECQSHSLKIIEIDGRSNNIIKSTANAER 244

Query: 185 LD--------------------GPNRSSHCKKAKRCWLREKAQDEE-------------- 244
           +D                    GP+RS+  KKAKR WLRE+AQ+EE              
Sbjct: 245 VDQLGVGGKKVELSDTAGENKKGPSRSTRRKKAKRQWLRERAQNEEQQQQLFETSIDQGP 304

Query: 245 --NDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLFPYLILPLEEI 304
             NDDV M +DTVPV+VKPGHI F+PVGKVA   AG+QKQNHF K             E 
Sbjct: 305 SHNDDVDMDEDTVPVVVKPGHIRFEPVGKVAADPAGQQKQNHFPK-------------ET 364

Query: 305 LHWNGITKKKKGQKWGKD-----------NCTDEPLQLPISE-KQPTIPAPVVGSINFDE 364
           LHWNGIT KKKGQKWGK+           +CTDEPLQLP +E +QPT PAPVVG INFDE
Sbjct: 365 LHWNGITNKKKGQKWGKEKTPSWKRNNSNSCTDEPLQLPTTETEQPTTPAPVVGPINFDE 424

Query: 365 LRPCTGLPQ------------------------AGKVSWYDIASNRIMLIPVLEYPVPVK 422
           LRPCTGLPQ                         GKV+WYDI SNRIML+PV EYP+PVK
Sbjct: 425 LRPCTGLPQEGDLVAYRLIELSSTWTPEISSFRVGKVAWYDIESNRIMLVPVPEYPLPVK 484

[Close]

BLAST of Sed0006330 vs. ExPASy Swiss-Prot
Match: Q8RWK8 (Coilin OS=Arabidopsis thaliana OX=3702 GN=COIL PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.1e-32
Identity = 159/566 (28.09%), Postives = 229/566 (40.46%), Query Frame = 0


Query: 5   GFVLSPFELFCILKVKDIVRVKDKKSKAIRL------------IETEQFRESKP------ 64
           GFVL PFE  C+LK KDIV VK KK   + +            IE E+  + +P      
Sbjct: 69  GFVLPPFESSCVLKDKDIVCVKKKKESLLEIVGEDSDENVYNAIEVEERPQIRPGEMLLA 128

Query: 65  -----MEFDGYESEPEEDE-----------------------------PKCTTKISKIPP 124
                 E  GYESE EEDE                              KC    ++  P
Sbjct: 129 NEEFQKETGGYESESEEDELEEEAEEFVPEKKASKKRKTSSKNQSTKRKKCKLDTTEESP 188

Query: 125 --------IIAVVQYANEK---------HEENNN--------LKSDHLQKVLVNENDLSS 184
                   +  VV+   +K         ++E NN         K    Q+     NDL  
Sbjct: 189 DERENTAVVSNVVKKKKKKKSLDVQSANNDEQNNDSTKPMTKSKRSSQQEESKEHNDLCQ 248

Query: 185 NSSESKLDGPNRSSHCKKAKRCWLREKA-------------------------------- 244
            S+E+K   P+RS+  KKAKR WLREK                                 
Sbjct: 249 LSAETK-KTPSRSARRKKAKRQWLREKTKLEKEELLQTQLVVAPSQKPVITIDHQATKEK 308

Query: 245 --------QDEENDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLF 304
                   Q EE  D +  D+ VPV V+PGHI FKP+      +A    +          
Sbjct: 309 HCETLENQQAEEVSDGF-GDEVVPVEVRPGHIRFKPL--AGTDEASLDSE---------- 368

Query: 305 PYLILPLEEILHWNGITKKKKGQKWG--------------KDNCTDEPLQLPISEKQPTI 364
                PL E + WNG   KKKGQKWG               ++ T +P +       P  
Sbjct: 369 -----PLVENVLWNGNMTKKKGQKWGTEKSGFSKRYAQDFNEDATTQPAEAETLANCPID 428

Query: 365 PAPVV---GSINFDEL------------RPCTGLPQAGKVSWYDIASNRIMLIPVLEYPV 422
              +V   GS+   ++             P     + GK+S+YD  S  + L+PV E+P+
Sbjct: 429 YEQLVAYTGSVKKGDVIAYRLIELTSSWTPEVSSFRVGKISYYDPDSKMVTLMPVQEFPI 488

[Close]

BLAST of Sed0006330 vs. ExPASy TrEMBL
Match: A0A6J1H0F7 (Coilin OS=Cucurbita moschata OX=3662 GN=LOC111458457 PE=3 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 1.0e-118
Identity = 288/562 (51.25%), Postives = 324/562 (57.65%), Query Frame = 0


Query: 5   GFVLSPFELFCILKVKDIVRVKDKKSKAIRLIETEQFRESKPM--------------EFD 64
           GFVL PFE  CILK KDIVRVK KKSKAI+     +FRE K +              E D
Sbjct: 65  GFVLPPFESVCILKDKDIVRVKKKKSKAIK-----EFREKKLVDEGVKLLADKEFENESD 124

Query: 65  GYESEPEEDEPKCT---------TKISK-----------------------IPPIIAVVQ 124
           GYESEPEEDEP+ T          K+SK                        P IIA VQ
Sbjct: 125 GYESEPEEDEPQATLPVTTAPVEKKVSKKRKASKITPNSKRKKTKSSRTEEFPSIIADVQ 184

Query: 125 YANEKHEENNNLKSDHLQKVLVNENDLSSNSSE-------------------------SK 184
            AN+KHEE N+LK +  QKV+V +ND S +SSE                          +
Sbjct: 185 PANKKHEERNHLKFELPQKVVVRKNDSSRSSSECQSHSLKIIEIDGRSNNIIKSTANAER 244

Query: 185 LD--------------------GPNRSSHCKKAKRCWLREKAQDEE-------------- 244
           +D                    GP+RS+  KKAKR WLRE+AQ EE              
Sbjct: 245 VDQLGVGGRKVELSDTAGENKKGPSRSTRRKKAKRQWLRERAQSEEQQQQLFETSIYQGP 304

Query: 245 --NDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLFPYLILPLEEI 304
             NDDV M +DTVPV+VKPGHI F+PVGKVA   AG+QKQNHF K             E 
Sbjct: 305 SHNDDVDMDEDTVPVVVKPGHIRFEPVGKVAADPAGQQKQNHFPK-------------ET 364

Query: 305 LHWNGITKKKKGQKWGKD-----------NCTDEPLQLPISE-KQPTIPAPVVGSINFDE 364
           LHWNGIT KKKGQKWGK+           +CTDEPLQLP SE +QPT PAPVVG INFDE
Sbjct: 365 LHWNGITNKKKGQKWGKEKTPSWKRNNSNSCTDEPLQLPTSETEQPTTPAPVVGPINFDE 424

Query: 365 LRPCTGLPQ------------------------AGKVSWYDIASNRIMLIPVLEYPVPVK 422
           LRPCTGLPQ                        AGKV+WYDI SNRIML+PV EYP+PVK
Sbjct: 425 LRPCTGLPQEGDLVAYRLIELSSTWTPEISSFRAGKVAWYDIESNRIMLVPVPEYPLPVK 484

[Close]

BLAST of Sed0006330 vs. ExPASy TrEMBL
Match: A0A5D3CZQ0 (Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001560 PE=3 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 1.1e-117
Identity = 279/543 (51.38%), Postives = 318/543 (58.56%), Query Frame = 0


Query: 5   GFVLSPFELFCILKVKDIVRVKDKKSKAI------RLIETEQFRESKPM----------- 64
           GFVL PFE  CILK +DIVRVK KKSKA       RLIETE+FRE KP+           
Sbjct: 65  GFVLPPFESVCILKDRDIVRVKKKKSKATILGEGDRLIETEEFRERKPVDNGVKFLADKE 124

Query: 65  ---EFDGYESEPEEDEPKCT---------TKISK-----------------------IPP 124
              E +GYES+ EEDE   T          K+SK                        P 
Sbjct: 125 FENESNGYESQSEEDETNATLPVKAVPVGKKVSKKRKASKIIHNSKRKKNKSSPTEEFPT 184

Query: 125 IIAVVQYANEKHEENNNLKSDHLQKVLVNENDLSSNSSESKLD----------------- 184
           IIA V++ +EKHEE N+LKS+  QKVLV++ D SS+SSE   D                 
Sbjct: 185 IIADVRHTDEKHEERNHLKSNLPQKVLVSKKDSSSSSSECDSDTSSSIEIGGKSNNIIKS 244

Query: 185 ----------------------------GPNRSSHCKKAKRCWLREKAQDEE-------- 244
                                       GP+RS+  KKAKR WLRE+AQ+EE        
Sbjct: 245 TTNAERVDQLGAGRTHVELSDTAGESKKGPSRSTRRKKAKRRWLRERAQNEEQQQQLFET 304

Query: 245 --------NDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLFPYLI 304
                   NDDV M DDTVPV+VKPGHI F+PVGKV   QAG++K+NHF K         
Sbjct: 305 NLDQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKENHFPK--------- 364

Query: 305 LPLEEILHWNGITKKKKGQKWGKDN-----------CTDEPLQLPISEKQPTIPAPVVGS 364
               E LHWNGIT KKKGQKWGK+            CT EPLQL    +QP  P PVVGS
Sbjct: 365 ----ETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPLQLLSETEQPKTPVPVVGS 424

Query: 365 INFDELRPCTGLPQAGKVSWYDIASNRIMLIPVLEYPVPVKKEIDEDSASQLDHNPICGK 422
           INFDELRP TGLPQAGKVSWYD  SNRIMLIPV EYP+PVKKEIDEDS  Q D  P    
Sbjct: 425 INFDELRPYTGLPQAGKVSWYDTESNRIMLIPVPEYPIPVKKEIDEDSELQSDTTPYGED 484

[Close]

BLAST of Sed0006330 vs. ExPASy TrEMBL
Match: A0A6J1DEE4 (Coilin OS=Momordica charantia OX=3673 GN=LOC111019678 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 7.6e-114
Identity = 285/571 (49.91%), Postives = 320/571 (56.04%), Query Frame = 0


Query: 5   GFVLSPFELFCILKVKDIVRVKDKKSKAIR------LIETEQFRESKPM----------- 64
           GFVL PFE  CILK KDIVRVK +KSKAI       LI TE+FRE KP+           
Sbjct: 67  GFVLPPFESVCILKDKDIVRVKKRKSKAINLKVGNGLIVTEEFRERKPVDNGVKLLADKE 126

Query: 65  ---EFDGYESEPEEDEPKCT---------TKISK-----------------------IPP 124
              E DGYESE EE++PK T          K+SK                        P 
Sbjct: 127 FENESDGYESESEEEKPKATLPVEASPVMKKVSKKRKASKIIRNSKRKKNKSSPTEEFPT 186

Query: 125 IIAVVQYANEKHEENNNLKSDHL---QKVLVNENDLSSNSSESKLD-------------- 184
           IIA VQ+ANEKHEE  +LKS+     QKVLVN+ND SS+SSE + D              
Sbjct: 187 IIADVQHANEKHEEIKHLKSNKSNLPQKVLVNKNDSSSSSSECESDTSNTTEIDGRSKNT 246

Query: 185 -------------------------------GPNRSSHCKKAKRCWLREKAQDEE----- 244
                                          GP+RSS  KKAKR WLREKAQ+EE     
Sbjct: 247 IESTANADRIDQLGVGRRHVESSKTASESKKGPSRSSRRKKAKRRWLREKAQNEERQQQL 306

Query: 245 -----------NDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLFP 304
                      NDDV M D+TVPV+VKPGHI F+P+GKVA  QAGEQKQ+HF        
Sbjct: 307 LETSIDQGPSQNDDVDMDDETVPVVVKPGHIRFEPIGKVAADQAGEQKQDHF-------- 366

Query: 305 YLILPLEEILHWNGITKKKKGQKWGKD-----------NCTDEPLQLPISE-KQPTIPAP 364
                  E LHWNGIT KKKGQKWGK+           N T EPLQLP SE +QP  P P
Sbjct: 367 -----PTETLHWNGITNKKKGQKWGKEKTPSWKRNNSNNFTGEPLQLPTSETEQPKAPEP 426

Query: 365 VVGSINFDELRPCTGLPQ------------------------AGKVSWYDIASNRIMLIP 422
           VVG INFDELRPCTG PQ                         GKVSWYDI SNRIMLIP
Sbjct: 427 VVGPINFDELRPCTGSPQEGDLVAYRLIELSSTWTPEISSFRVGKVSWYDIESNRIMLIP 486

[Close]

BLAST of Sed0006330 vs. ExPASy TrEMBL
Match: A0A1S3BF70 (Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 7.6e-114
Identity = 279/565 (49.38%), Postives = 318/565 (56.28%), Query Frame = 0


Query: 5   GFVLSPFELFCILKVKDIVRVKDKKSKAI------RLIETEQFRESKPM----------- 64
           GFVL PFE  CILK +DIVRVK KKSKA       RLIETE+FRE KP+           
Sbjct: 65  GFVLPPFESVCILKDRDIVRVKKKKSKATILGEGDRLIETEEFRERKPVDNGVKFLADKE 124

Query: 65  ---EFDGYESEPEEDEPKCT---------TKISK-----------------------IPP 124
              E +GYES+ EEDE   T          K+SK                        P 
Sbjct: 125 FENESNGYESQSEEDETNATLPVKAVPVGKKVSKKRKASKIIHNSKRKKNKSSPTEEFPT 184

Query: 125 IIAVVQYANEKHEENNNLKSDHLQKVLVNENDLSSNSSESKLD----------------- 184
           IIA V++ +EKHEE N+LKS+  QKVLV++ D SS+SSE   D                 
Sbjct: 185 IIADVRHTDEKHEERNHLKSNLPQKVLVSKKDSSSSSSECDSDTSSSIEIGGKSNNIIKS 244

Query: 185 ----------------------------GPNRSSHCKKAKRCWLREKAQDEE-------- 244
                                       GP+RS+  KKAKR WLRE+AQ+EE        
Sbjct: 245 TTNAERVDQLGAGRTHVELSDTAGESKKGPSRSTRRKKAKRRWLRERAQNEEQQLFETNL 304

Query: 245 ------NDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLFPYLILP 304
                 NDDV M DDTVPV+VKPGHI F+PVGKV   QAG++K+NHF K           
Sbjct: 305 DQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKENHFPK----------- 364

Query: 305 LEEILHWNGITKKKKGQKWGKDN-----------CTDEPLQLPISEKQPTIPAPVVGSIN 364
             E LHWNGIT KKKGQKWGK+            CT EPLQL    +QP  P PVVGSIN
Sbjct: 365 --ETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPLQLLSETEQPKTPVPVVGSIN 424

Query: 365 FDELRPCTGLPQ------------------------AGKVSWYDIASNRIMLIPVLEYPV 422
           FDELRP TGLPQ                        AGKVSWYD  SNRIMLIPV EYP+
Sbjct: 425 FDELRPYTGLPQEGDLIAYRLIELSSTWTPEISSFRAGKVSWYDTESNRIMLIPVPEYPI 484

[Close]

BLAST of Sed0006330 vs. ExPASy TrEMBL
Match: A0A1S3BF15 (Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 1.3e-113
Identity = 279/567 (49.21%), Postives = 318/567 (56.08%), Query Frame = 0


Query: 5   GFVLSPFELFCILKVKDIVRVKDKKSKAI------RLIETEQFRESKPM----------- 64
           GFVL PFE  CILK +DIVRVK KKSKA       RLIETE+FRE KP+           
Sbjct: 65  GFVLPPFESVCILKDRDIVRVKKKKSKATILGEGDRLIETEEFRERKPVDNGVKFLADKE 124

Query: 65  ---EFDGYESEPEEDEPKCT---------TKISK-----------------------IPP 124
              E +GYES+ EEDE   T          K+SK                        P 
Sbjct: 125 FENESNGYESQSEEDETNATLPVKAVPVGKKVSKKRKASKIIHNSKRKKNKSSPTEEFPT 184

Query: 125 IIAVVQYANEKHEENNNLKSDHLQKVLVNENDLSSNSSESKLD----------------- 184
           IIA V++ +EKHEE N+LKS+  QKVLV++ D SS+SSE   D                 
Sbjct: 185 IIADVRHTDEKHEERNHLKSNLPQKVLVSKKDSSSSSSECDSDTSSSIEIGGKSNNIIKS 244

Query: 185 ----------------------------GPNRSSHCKKAKRCWLREKAQDEE-------- 244
                                       GP+RS+  KKAKR WLRE+AQ+EE        
Sbjct: 245 TTNAERVDQLGAGRTHVELSDTAGESKKGPSRSTRRKKAKRRWLRERAQNEEQQQQLFET 304

Query: 245 --------NDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLFPYLI 304
                   NDDV M DDTVPV+VKPGHI F+PVGKV   QAG++K+NHF K         
Sbjct: 305 NLDQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKENHFPK--------- 364

Query: 305 LPLEEILHWNGITKKKKGQKWGKDN-----------CTDEPLQLPISEKQPTIPAPVVGS 364
               E LHWNGIT KKKGQKWGK+            CT EPLQL    +QP  P PVVGS
Sbjct: 365 ----ETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPLQLLSETEQPKTPVPVVGS 424

Query: 365 INFDELRPCTGLPQ------------------------AGKVSWYDIASNRIMLIPVLEY 422
           INFDELRP TGLPQ                        AGKVSWYD  SNRIMLIPV EY
Sbjct: 425 INFDELRPYTGLPQEGDLIAYRLIELSSTWTPEISSFRAGKVSWYDTESNRIMLIPVPEY 484

[Close]

BLAST of Sed0006330 vs. TAIR 10
Match: AT1G13030.1 (sphere organelles protein-related )

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-33
Identity = 159/566 (28.09%), Postives = 229/566 (40.46%), Query Frame = 0


Query: 5   GFVLSPFELFCILKVKDIVRVKDKKSKAIRL------------IETEQFRESKP------ 64
           GFVL PFE  C+LK KDIV VK KK   + +            IE E+  + +P      
Sbjct: 69  GFVLPPFESSCVLKDKDIVCVKKKKESLLEIVGEDSDENVYNAIEVEERPQIRPGEMLLA 128

Query: 65  -----MEFDGYESEPEEDE-----------------------------PKCTTKISKIPP 124
                 E  GYESE EEDE                              KC    ++  P
Sbjct: 129 NEEFQKETGGYESESEEDELEEEAEEFVPEKKASKKRKTSSKNQSTKRKKCKLDTTEESP 188

Query: 125 --------IIAVVQYANEK---------HEENNN--------LKSDHLQKVLVNENDLSS 184
                   +  VV+   +K         ++E NN         K    Q+     NDL  
Sbjct: 189 DERENTAVVSNVVKKKKKKKSLDVQSANNDEQNNDSTKPMTKSKRSSQQEESKEHNDLCQ 248

Query: 185 NSSESKLDGPNRSSHCKKAKRCWLREKA-------------------------------- 244
            S+E+K   P+RS+  KKAKR WLREK                                 
Sbjct: 249 LSAETK-KTPSRSARRKKAKRQWLREKTKLEKEELLQTQLVVAPSQKPVITIDHQATKEK 308

Query: 245 --------QDEENDDVYMHDDTVPVIVKPGHISFKPVGKVAVHQAGEQKQNHFLKLSMLF 304
                   Q EE  D +  D+ VPV V+PGHI FKP+      +A    +          
Sbjct: 309 HCETLENQQAEEVSDGF-GDEVVPVEVRPGHIRFKPL--AGTDEASLDSE---------- 368

Query: 305 PYLILPLEEILHWNGITKKKKGQKWG--------------KDNCTDEPLQLPISEKQPTI 364
                PL E + WNG   KKKGQKWG               ++ T +P +       P  
Sbjct: 369 -----PLVENVLWNGNMTKKKGQKWGTEKSGFSKRYAQDFNEDATTQPAEAETLANCPID 428

Query: 365 PAPVV---GSINFDEL------------RPCTGLPQAGKVSWYDIASNRIMLIPVLEYPV 422
              +V   GS+   ++             P     + GK+S+YD  S  + L+PV E+P+
Sbjct: 429 YEQLVAYTGSVKKGDVIAYRLIELTSSWTPEVSSFRVGKISYYDPDSKMVTLMPVQEFPI 488

The following BLAST results are available for this feature:

BLAST of Sed0006330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956914.1	2.1e-118	51.25	coilin [Cucurbita moschata]	[more]
KAG6601546.1	8.0e-118	51.42	Coilin, partial [Cucurbita argyrosperma subsp. sororia]	[more]
TYK15659.1	2.3e-117	51.38	coilin isoform X1 [Cucumis melo var. makuwa]	[more]
KAG7032318.1	4.0e-117	51.25	Coilin [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023539699.1	8.9e-117	50.53	coilin [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0006330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWK8	3.1e-32	28.09	Coilin OS=Arabidopsis thaliana OX=3702 GN=COIL PE=1 SV=1	[more]

BLAST of Sed0006330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H0F7	1.0e-118	51.25	Coilin OS=Cucurbita moschata OX=3662 GN=LOC111458457 PE=3 SV=1	[more]
A0A5D3CZQ0	1.1e-117	51.38	Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001560 PE=3 SV...	[more]
A0A6J1DEE4	7.6e-114	49.91	Coilin OS=Momordica charantia OX=3673 GN=LOC111019678 PE=3 SV=1	[more]
A0A1S3BF70	7.6e-114	49.38	Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1	[more]
A0A1S3BF15	1.3e-113	49.21	Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1	[more]

BLAST of Sed0006330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13030.1	2.2e-33	28.09	sphere organelles protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 338..402
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 338..359
IPR024822	Coilin	PANTHER	PTHR15197	COILIN P80	coord: 5..46 coord: 92..418

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006330.1	Sed0006330.1	mRNA