Sed0006276 (gene) Chayote v1

Overview


Name	Sed0006276
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Nuclear transcription factor Y subunit B
Location	LG04: 47580651 .. 47581061 (-)
RNA-Seq Expression	Sed0006276
Synteny	Sed0006276

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGACATTAATAATGGGGAGGAGGAGCTTCAACTACCAATAGCAAACATTGGCAGAATAATGAAGAAGATAGTTCCAAGAACAGCCAAAATTTCGAAAGAAGCCAAGCAAACAATGAAGGAATGCGCCACAGAGTTCATCAGCTTCGTAACAAGTGAAGCAGCTCAAAAATGTCACAACGAGAATCGAAGAACCCTCATTGGAGACGATATTTGTTGGGCTTTTGGTGCACTTGGCTTAGACTACTATGCTCACGCTTTTACTATGTACTTGCTCAAGTATAGAGAAGTTGAGAGAATCAAGCCTCAATACTGCCAAAGCGATAAGCCTCCAAAACAAGAAGCACATGAACATGAACGCGATGCATTTTGTTTTGGTGAGATGGGTGAAACCTCTCAACCAATTTAG

mRNA sequence

ATGGGAGACATTAATAATGGGGAGGAGGAGCTTCAACTACCAATAGCAAACATTGGCAGAATAATGAAGAAGATAGTTCCAAGAACAGCCAAAATTTCGAAAGAAGCCAAGCAAACAATGAAGGAATGCGCCACAGAGTTCATCAGCTTCGTAACAAGTGAAGCAGCTCAAAAATGTCACAACGAGAATCGAAGAACCCTCATTGGAGACGATATTTGTTGGGCTTTTGGTGCACTTGGCTTAGACTACTATGCTCACGCTTTTACTATGTACTTGCTCAAGTATAGAGAAGTTGAGAGAATCAAGCCTCAATACTGCCAAAGCGATAAGCCTCCAAAACAAGAAGCACATGAACATGAACGCGATGCATTTTGTTTTGGTGAGATGGGTGAAACCTCTCAACCAATTTAG

Coding sequence (CDS)

ATGGGAGACATTAATAATGGGGAGGAGGAGCTTCAACTACCAATAGCAAACATTGGCAGAATAATGAAGAAGATAGTTCCAAGAACAGCCAAAATTTCGAAAGAAGCCAAGCAAACAATGAAGGAATGCGCCACAGAGTTCATCAGCTTCGTAACAAGTGAAGCAGCTCAAAAATGTCACAACGAGAATCGAAGAACCCTCATTGGAGACGATATTTGTTGGGCTTTTGGTGCACTTGGCTTAGACTACTATGCTCACGCTTTTACTATGTACTTGCTCAAGTATAGAGAAGTTGAGAGAATCAAGCCTCAATACTGCCAAAGCGATAAGCCTCCAAAACAAGAAGCACATGAACATGAACGCGATGCATTTTGTTTTGGTGAGATGGGTGAAACCTCTCAACCAATTTAG

Protein sequence

MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQYCQSDKPPKQEAHEHERDAFCFGEMGETSQPI

Homology

[Close]

BLAST of Sed0006276 vs. NCBI nr
Match: KAG6590402.1 (Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173.3 bits (438), Expect = 1.4e-39
Identity = 90/136 (66.18%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 1   MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCH 60
           MG+ NNG +ELQLPIAN+GR+MKKI+P+ AKISKEAK TM+ECATEFISFVTSEAA+KCH
Sbjct: 1   MGE-NNG-DELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCH 60

Query: 61  NENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQYCQSDKPPKQEAHEHE 120
            +NRRTL GDDICWAFG+ GLD YA A   YLLKYR+VERI  Q+ +++  P+Q+ H+ E
Sbjct: 61  KDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQF-KTNIAPEQQKHDQE 120

Query: 121 RD---AFCFGEMGETS 134
           ++    F  GE+GETS
Sbjct: 121 QEQELEFYHGEIGETS 133

[Close]

BLAST of Sed0006276 vs. NCBI nr
Match: XP_022961414.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita moschata])

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-39
Identity = 90/133 (67.67%), Postives = 110/133 (82.71%), Query Frame = 0


Query: 1   MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCH 60
           MG+ NNG +ELQLPIAN+GR+MKKI+P+ AKISKEAK TM+ECATEFISFVTSEAA+KCH
Sbjct: 1   MGE-NNG-DELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCH 60

Query: 61  NENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQYCQSDKPPKQEAHEHE 120
            +NRRTL GDDICWAFG+ GLD YA A   YLLKYR+VERI  Q+ +++  P+Q+ H+ E
Sbjct: 61  KDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQF-KTNIAPEQQKHDQE 120

Query: 121 RDAFCFGEMGETS 134
            + F  GE+GETS
Sbjct: 121 LE-FYHGEIGETS 129

[Close]

BLAST of Sed0006276 vs. NCBI nr
Match: XP_023546470.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-37
Identity = 88/141 (62.41%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCH 60
           MG+ NNG +ELQLPIAN+GR+MKKI+P+ AKISKEAK TM+ECATEFISFVTSEAA+KCH
Sbjct: 1   MGE-NNG-DELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCH 60

Query: 61  NENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQYCQSDKPPKQEAHEHE 120
            +NRRTL GDDICWAFG+ GLD YA A   YLLKYR+VERI  Q+ +++  P+Q+ H+ +
Sbjct: 61  KDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQF-KTNIAPEQQRHDQD 120

Query: 121 RDAFCFGEM------GETSQP 136
           ++     E       GETS+P
Sbjct: 121 QEQKQEQEQELEFNHGETSEP 138

[Close]

BLAST of Sed0006276 vs. NCBI nr
Match: XP_022968852.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-37
Identity = 87/145 (60.00%), Postives = 107/145 (73.79%), Query Frame = 0


Query: 1   MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCH 60
           MG+ NNG +ELQLPIAN+GR+MKKI+P+ AKISKEAK TM+ECATEFISFVTSEAA+KCH
Sbjct: 1   MGE-NNG-DELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCH 60

Query: 61  NENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQY------------CQS 120
            +NRRTL GDDICWAFG+ GLD YA A   YLLKYR++ERI  Q+             + 
Sbjct: 61  KDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDIERINAQFKTNIAREQQEHGQER 120

Query: 121 DKPPKQEAHEHERDAFCFGEMGETS 134
           ++  +QE  + +   F  GE+GETS
Sbjct: 121 EQEQEQEQEQEQELEFYHGEIGETS 143

[Close]

BLAST of Sed0006276 vs. NCBI nr
Match: KAA0050890.1 (nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 3.2e-36
Identity = 90/145 (62.07%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 1   MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCH 60
           M + NNG+E L+LPIAN+ RIMKKI+P+  KISKEAK+TM+ECA EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 61  NENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIK-PQY-C--------QSDK 120
            ENRRTL GDDICWAF + GLD YA  F  YLLKYREVERIK  +Y C        Q D 
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLLKYREVERIKVDEYKCKITQRLLPQDDD 120

Query: 121 PPKQEAHEHERDAFCFGEMGETSQP 136
             +QE +    D    GE+GETS P
Sbjct: 121 DKEQEDNHRSID----GEIGETSSP 141

[Close]

BLAST of Sed0006276 vs. ExPASy Swiss-Prot
Match: O04027 (Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NFYB4 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.0e-29
Identity = 64/114 (56.14%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 8   EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTL 67
           +E+  LPIAN+GR+MK+I+P  AKISKEAKQT++ECATEFISFVT EA++KCH ENR+T+
Sbjct: 3   DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62

Query: 68  IGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQYCQSDKPPKQEAHEHER 122
            GDDI WA   LGLD YA A   +L KYRE ER + ++ +       E   + R
Sbjct: 63  NGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTEHNKGSNDSGNEKETNTR 116

[Close]

BLAST of Sed0006276 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-27
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 8   EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTL 67
           E++  LPIAN+GRIMK I+P  AK+SKEAK+TM+EC +EFISFVT EA+ KCH E R+T+
Sbjct: 51  EQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV 110

Query: 68  IGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQY 106
            GDDICWA   LG D YA     YL +YR +E  KP +
Sbjct: 111 NGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNH 148

[Close]

BLAST of Sed0006276 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-25
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 5   NNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENR 64
           NN E++  LPIAN+GRIMKK++P   KISK+AK+T++EC +EFISFVT EA+ KC  E R
Sbjct: 33  NNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKR 92

Query: 65  RTLIGDDICWAFGALGLDYYAHAFTMYLLKYR--EVERIKPQYCQSDKPPKQEAHEHERD 124
           +T+ GDDI WA   LG + Y     +YL KYR  E E++     Q  +  +Q+  +    
Sbjct: 93  KTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQQQRQQQQQIQQQNHH 152

Query: 125 AFCFGEMGETS 134
            + F E  + +
Sbjct: 153 NYQFQEQDQNN 163

[Close]

BLAST of Sed0006276 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-24
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 2   GDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHN 61
           G+ +  E++  LPIAN+ RIMKK +P  AKISK+AK+T++EC +EFISF+T EA+ KC  
Sbjct: 15  GNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQR 74

Query: 62  ENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVE 100
           E R+T+ GDD+ WA   LG + Y     +YL KYREVE
Sbjct: 75  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVE 112

[Close]

BLAST of Sed0006276 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 8   EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTL 67
           E++  LPIANI RIMKK +P   KI+K+AK+T++EC +EFISF+TSEA+ KC  E R+T+
Sbjct: 38  EQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTI 97

Query: 68  IGDDICWAFGALGLDYYAHAFTMYLLKYREVE 100
            GDD+ WA   LG + Y     +YL KYRE+E
Sbjct: 98  NGDDLLWAMATLGFEDYIEPLKVYLQKYREME 129

[Close]

BLAST of Sed0006276 vs. ExPASy TrEMBL
Match: A0A6J1HDY6 (nuclear transcription factor Y subunit B-4-like OS=Cucurbita moschata OX=3662 GN=LOC111461996 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 8.9e-40
Identity = 90/133 (67.67%), Postives = 110/133 (82.71%), Query Frame = 0


Query: 1   MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCH 60
           MG+ NNG +ELQLPIAN+GR+MKKI+P+ AKISKEAK TM+ECATEFISFVTSEAA+KCH
Sbjct: 1   MGE-NNG-DELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCH 60

Query: 61  NENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQYCQSDKPPKQEAHEHE 120
            +NRRTL GDDICWAFG+ GLD YA A   YLLKYR+VERI  Q+ +++  P+Q+ H+ E
Sbjct: 61  KDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQF-KTNIAPEQQKHDQE 120

Query: 121 RDAFCFGEMGETS 134
            + F  GE+GETS
Sbjct: 121 LE-FYHGEIGETS 129

[Close]

BLAST of Sed0006276 vs. ExPASy TrEMBL
Match: A0A6J1HUN8 (nuclear transcription factor Y subunit B-4-like OS=Cucurbita maxima OX=3661 GN=LOC111467987 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 87/145 (60.00%), Postives = 107/145 (73.79%), Query Frame = 0


Query: 1   MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCH 60
           MG+ NNG +ELQLPIAN+GR+MKKI+P+ AKISKEAK TM+ECATEFISFVTSEAA+KCH
Sbjct: 1   MGE-NNG-DELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCH 60

Query: 61  NENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQY------------CQS 120
            +NRRTL GDDICWAFG+ GLD YA A   YLLKYR++ERI  Q+             + 
Sbjct: 61  KDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDIERINAQFKTNIAREQQEHGQER 120

Query: 121 DKPPKQEAHEHERDAFCFGEMGETS 134
           ++  +QE  + +   F  GE+GETS
Sbjct: 121 EQEQEQEQEQEQELEFYHGEIGETS 143

[Close]

BLAST of Sed0006276 vs. ExPASy TrEMBL
Match: A0A5A7U6S7 (Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold761G00150 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.6e-36
Identity = 90/145 (62.07%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 1   MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCH 60
           M + NNG+E L+LPIAN+ RIMKKI+P+  KISKEAK+TM+ECA EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 61  NENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIK-PQY-C--------QSDK 120
            ENRRTL GDDICWAF + GLD YA  F  YLLKYREVERIK  +Y C        Q D 
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLLKYREVERIKVDEYKCKITQRLLPQDDD 120

Query: 121 PPKQEAHEHERDAFCFGEMGETSQP 136
             +QE +    D    GE+GETS P
Sbjct: 121 DKEQEDNHRSID----GEIGETSSP 141

[Close]

BLAST of Sed0006276 vs. ExPASy TrEMBL
Match: A0A5D3CG76 (Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003890 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-35
Identity = 89/145 (61.38%), Postives = 103/145 (71.03%), Query Frame = 0


Query: 1   MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCH 60
           M + NNG+E L+LPIAN+ RIMKKI+P+  KISKEAK+TM+ECA EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 61  NENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIK-PQY-C--------QSDK 120
            ENRRTL GDDICWAF + GLD YA  F  YL KYREVERIK  +Y C        Q D 
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLLPQDDD 120

Query: 121 PPKQEAHEHERDAFCFGEMGETSQP 136
             +QE +    D    GE+GETS P
Sbjct: 121 DKEQEDNHRSID----GEIGETSSP 141

[Close]

BLAST of Sed0006276 vs. ExPASy TrEMBL
Match: A0A1S3BRX1 (nuclear transcription factor Y subunit B-4 OS=Cucumis melo OX=3656 GN=LOC103492518 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-35
Identity = 89/145 (61.38%), Postives = 103/145 (71.03%), Query Frame = 0


Query: 1   MGDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCH 60
           M + NNG+E L+LPIAN+ RIMKKI+P+  KISKEAK+TM+ECA EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 61  NENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVERIK-PQY-C--------QSDK 120
            ENRRTL GDDICWAF + GLD YA  F  YL KYREVERIK  +Y C        Q D 
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLLPQDDD 120

Query: 121 PPKQEAHEHERDAFCFGEMGETSQP 136
             +QE +    D    GE+GETS P
Sbjct: 121 DKEQEDNHRSID----GEIGETSSP 141

[Close]

BLAST of Sed0006276 vs. TAIR 10
Match: AT1G09030.1 (nuclear factor Y, subunit B4 )

HSP 1 Score: 129.0 bits (323), Expect = 2.8e-30
Identity = 64/114 (56.14%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 8   EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTL 67
           +E+  LPIAN+GR+MK+I+P  AKISKEAKQT++ECATEFISFVT EA++KCH ENR+T+
Sbjct: 3   DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62

Query: 68  IGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQYCQSDKPPKQEAHEHER 122
            GDDI WA   LGLD YA A   +L KYRE ER + ++ +       E   + R
Sbjct: 63  NGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTEHNKGSNDSGNEKETNTR 116

[Close]

BLAST of Sed0006276 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-28
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 8   EEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENRRTL 67
           E++  LPIAN+GRIMK I+P  AK+SKEAK+TM+EC +EFISFVT EA+ KCH E R+T+
Sbjct: 51  EQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV 110

Query: 68  IGDDICWAFGALGLDYYAHAFTMYLLKYREVERIKPQY 106
            GDDICWA   LG D YA     YL +YR +E  KP +
Sbjct: 111 NGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNH 148

[Close]

BLAST of Sed0006276 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 5   NNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNENR 64
           NN E++  LPIAN+GRIMKK++P   KISK+AK+T++EC +EFISFVT EA+ KC  E R
Sbjct: 33  NNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKR 92

Query: 65  RTLIGDDICWAFGALGLDYYAHAFTMYLLKYR--EVERIKPQYCQSDKPPKQEAHEHERD 124
           +T+ GDDI WA   LG + Y     +YL KYR  E E++     Q  +  +Q+  +    
Sbjct: 93  KTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQQQRQQQQQIQQQNHH 152

Query: 125 AFCFGEMGETS 134
            + F E  + +
Sbjct: 153 NYQFQEQDQNN 163

[Close]

BLAST of Sed0006276 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 114.0 bits (284), Expect = 9.5e-26
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 2   GDINNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHN 61
           G+ +  E++  LPIAN+ RIMKK +P  AKISK+AK+T++EC +EFISF+T EA+ KC  
Sbjct: 15  GNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQR 74

Query: 62  ENRRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVE 100
           E R+T+ GDD+ WA   LG + Y     +YL KYREVE
Sbjct: 75  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVE 112

[Close]

BLAST of Sed0006276 vs. TAIR 10
Match: AT3G53340.1 (nuclear factor Y, subunit B10 )

HSP 1 Score: 110.9 bits (276), Expect = 8.0e-25
Identity = 51/96 (53.12%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 4   INNGEEELQLPIANIGRIMKKIVPRTAKISKEAKQTMKECATEFISFVTSEAAQKCHNEN 63
           +N  E++  LPIANI RIMK+ +P   KI+K+AK+TM+EC +EFISFVTSEA+ KC  E 
Sbjct: 25  LNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREK 84

Query: 64  RRTLIGDDICWAFGALGLDYYAHAFTMYLLKYREVE 100
           R+T+ GDD+ WA   LG + Y     +YL++YRE+E
Sbjct: 85  RKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

The following BLAST results are available for this feature:

BLAST of Sed0006276 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590402.1	1.4e-39	66.18	Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subs...	[more]
XP_022961414.1	1.8e-39	67.67	nuclear transcription factor Y subunit B-4-like [Cucurbita moschata]	[more]
XP_023546470.1	1.7e-37	62.41	nuclear transcription factor Y subunit B-4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022968852.1	2.9e-37	60.00	nuclear transcription factor Y subunit B-4-like [Cucurbita maxima]	[more]
KAA0050890.1	3.2e-36	62.07	nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0006276 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04027	4.0e-29	56.14	Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O82248	1.7e-27	59.18	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SIT9	1.6e-25	44.27	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O23310	1.3e-24	53.06	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q60EQ4	1.1e-23	54.35	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Sed0006276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDY6	8.9e-40	67.67	nuclear transcription factor Y subunit B-4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HUN8	1.4e-37	60.00	nuclear transcription factor Y subunit B-4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7U6S7	1.6e-36	62.07	Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3CG76	1.0e-35	61.38	Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BRX1	1.0e-35	61.38	nuclear transcription factor Y subunit B-4 OS=Cucumis melo OX=3656 GN=LOC1034925...	[more]

BLAST of Sed0006276 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09030.1	2.8e-30	56.14	nuclear factor Y, subunit B4	[more]
AT2G47810.1	1.2e-28	59.18	nuclear factor Y, subunit B5	[more]
AT2G13570.1	1.1e-26	44.27	nuclear factor Y, subunit B7	[more]
AT4G14540.1	9.5e-26	53.06	nuclear factor Y, subunit B3	[more]
AT3G53340.1	8.0e-25	53.13	nuclear factor Y, subunit B10	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 78..96 score: 26.67 coord: 40..58 score: 46.77 coord: 59..77 score: 22.25
None	No IPR available	PANTHER	PTHR11064:SF83	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4	coord: 8..120
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 12..75 e-value: 1.2E-23 score: 83.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..125 e-value: 1.7E-34 score: 120.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 9..116
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 8..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006276.1	Sed0006276.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding