Sed0005979 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGAGCTAGATGGAGAGACTTATGCCAAAGTACTCAAACTTTTGCATGGAAATGTTACTTGGAGAAAGATATTTTTGGACATACCCGATGCAAGGAAGAGAGATTTGATTTATAGTCTTTAGATCTTACTATGAGATTTTGTAGCCATCTCATTCATAGGAAGAATTTTTTTTTAGAATGATATCTTTTGTATTTTTTATATAACTTACTTTCTCACGTACTAAACTTATGCATTTTGCTATGTGGTTTCATTATATAATGTCATGTTGTCCATGTTTTATTCAAGGATATCTCTATGGATTTAATTGAAGAGAATGACTTGGATTATGATTCTGACGGCGATGATGATGTTGTGTACATCTTTTTTGGTTTAATAAATGGTTTTCACAAGATGCACTCTTCAAGACAACTATGTAGAACGTCTTTACTCAAAGGTCATGATTATGTGATTGAGTTATTAAATGGGAATGACACAAGATGTTTTGATTGCTTTAGGATGAAAAAAGTTACATTCGTAGCTTTTTGTGAGGATTTAAAGGCGAAGACGAATTTGAAAGCATCTAGATATCTTTCTGTTCAAGAGAAAGTTTGTAACAGCCCAGGTTTTCATCCCGGTCTTCCAGGTATGCCCTAGGGGTATTTTGGTAATTTGGTCGGGCCGTCAGAGCCGTTTATGTCTTTTCCAGTTGTTAAAAATTATTGGATGGTCTTTTGTAGGTTTTTGAGGCTTTGTGGATGTGTTTGGGCATGGAGAGATGCAAAAGTAAAATAGAGAATTAATTGTGTACAGCTGGGATTCGAGCCCGAGTCTTCTGGAAGCCTGTTGGGATGCATGCCAGTTGAGCTATTGGGAGCTCTTGTTACTCTTTCCGCGACATATCTTGATTAGCCTTGGATCCTTAGAGTTTTGGTGCTTTTGATTAAAAGAAGAGAAAATAGGGCTTTAGGTATTCTTCTCCAAAAGCCCCTTGGCCGCCCAAGCATTTCTCCCTAGCTCCCAAGCCGAGTCCCTTCTCCTTAGTAGCCCCGAGGTCCGATCGTCGTTCTGGTAAGGTTCTTCGTCTTCTTCTTCTTCTTCTTCTTTGATTGACACTCTTGCTGGCCGAAGTGAAAAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGTTGCAGCTAGCCGAGAGAAGCCCAGCAGCCAGCAGCCAGATCGAGCCCAGCTCCATCGTCCCCCTGTCGCACGCACCAGCAGGCATCAGATCGCCCAGCAGCAGGCCCGTCGCCCGGTCGCACGCCCAGATTGCCTAGCGGACTGCCGCAGCCGTCGCCGCGACGCCAGATCGCCGCCGCGCGTTATGTCACTCGCTCGCTGCGCGTCGGATCTCGTTGCTCGCCCAGCGCACCACCTGTTCTCTCGCTCGCGACGCGCGCTGAGCGCCGTGCAAGACTTCCACCCGCCCCACCAGCACACCTGGCGTGCGATCCTGCCGCCCATCAGCGCCCAACAACAGCCTCACCCATGCAGCCTGTCCGTCCGCGCGTCAGCCGTGCCGCGTGAGTTGCTCCCGAGCCGAGTCCTGTTTATTTTATTATATTTAGGCCTATGGATTGTGATTATTATTGTGTTTGTTAGGCTCTTGTTAGCTAGCTCGGGAGTGATCGCAGCTTAGGATTCTTGTGTGTAGTTGCCTCCCGACCAAGGTAAGGATTTCTTACCGGAGTTGTGTGGGCCCTGCGATATTATATGTGATTGCTGTTTGTATGCTTGTTGTGTGTATCAGCATGTTTAGTGATAGGTGCTCTGTTCTGAATTTCTGACTGGCATGATTTCTTATGTTGTTTCTCATGTTAGTCCATGCTAGGTTGTTCCGTTCTGGCATGGTCATTATCTGTTCTTGCTTCGTAGTATCATGCTAGGTTCGTTGTATTTGTTGAGCACGTATTAGATTGTTTGTTGTATCTGTTTATAGGTTTGAGATATGGTAGGTAGCATCATCCGGGCCAGGATGCATAACGTAACTTGCATCCATGGCAGGGACGTACGAGACAATACTCCGTCCCTGATCCCCCGTTAGGGTTTAGCTAACCTTAACGGCAGGCCCTGCAATCTTGGGTGAGGGTGGCAGACTGTTAAATGCCCCAACGGTCGGGATGATGACATGGCATTGCCTTGTCCCCGGCAGTCGGCACGTCCTCAGCGTGTTCGGCCGTAGCCTTTGATTGCCACCTGTTAGGGTAAGGACGACTTCCTGGTGTAAGCCTACCACGACCGGTTCCTTAGCCTCAAAAAGCGGTGGTTCAGCCGACATAGTTCACGTGTCCAGGTCTCACACCCCTATGTCAGTGACACCGATCCAGAGATTTAGTTAGGCATGGTGACTGGACCTGGGCAACTTGCCACTAGACCCGGCACCCCCCATGGTTTACAGTAGCATGCGGTGCGCGCATACGCTCATTACAGCGCCGACCGGAGAGCTCCTCGGGATCTTGAGCCAGTGCACCTTTCGTGATCGATGATGATGCCGAGGCCGAGACTTGTTTCTCGTATAGGATCGTATCATGAGGTGGATTATTCTGGAGTAAGACCCTGAGTTGGCATCCAAAGATTATGTGTGGATTTAAGCTATGTGCTCTCTTCTGTGTTTATATTCATAGCTTGCATACCTTTCTGCTAGATGACCATGTATATCGTATTGTACCCCGGTTGGGGATTCTTTCTAAGTAATTCGTTACTCACCCTTATTTTTGTGGTTTTCCACAGGTAACCAAGGTGCGAGACTGGATGGCTGAAGGAGGAGCTATGATCATGGAAAACAGCTGTCGAACTCTGAATTTTATCTATGATTCTTTATGTATTATTTTTCCTCTGAATGCATGTAGTTGGGCACAGAGCCCTAGGTTGTTTTCTGAATGCTTTTCCGGATTCTAGCACTATTGTAACTTTTGGATGTTTTGAATGTTTTAAATAAATCTCTGATCAGAGTAAGTTTTGAAAATGTATTTTTCTTGGAACAGGTGCTTGGAAACAGGGACAGGTTTCAGGAATCTATGTTGACTTTTAAATGGATGTTATGTGTTTTAGTTTTTACTTAGAATCTGAAACACCATTCTTGCATATTGACTTTTGTTTTGAATGCATGCATTGAGGTAAAGACCTATTTTAGGACCCCATTCGGGTCGGGTCTTTACAAAGTTGCCATTTTTTTTATTAGTCATATCACATAATGAGAGAAATCGTATAGTAGCTGAAAGGTTTCAACATTCAGGTCAAACTATTTCTCGAGTTTTTAACATTGTTTTGAAAAGAGTTTGCAAGCTTGGTGTTGAAATTATTTGTCCACCAAATGGAGATAATATACCACAAGAGATTAGATCGAAGTCTAAATACTTCCCATTTTTTAAAGTAATATCTTAA ATGGATGAGCTAGATGGAGAGACTTATGCCAAAGTACTCAAACTTTTGCATGGAAATGTTACTTGGAGAAAGATATTTTTGGACATACCCGATGCAAGGAAGAGAGATTTGATTTATAGTCATGATTATGTGATTGAGTTATTAAATGGGAATGACACAAGATGTTTTGATTGCTTTAGGATGAAAAAAGTTACATTCGTAGCTTTTTGTGAGGATTTAAAGGCGAAGACGAATTTGAAAGCATCTAGATATCTTTCTGTTCAAGAGAAAGTTTGTAACAGCCCAGGTTTTCATCCCGGACCCCATTCGGGTCGGGTCTTTACAAAGTTGCCATTTTTTTTATTAGTCATATCACATAATGAGAGAAATCGTATAGTAGCTGAAAGGTTTCAACATTCAGGTCAAACTATTTCTCGAGTTTTTAACATTGTTTTGAAAAGAGTTTGCAAGCTTGGTGTTGAAATTATTTGTCCACCAAATGGAGATAATATACCACAAGAGATTAGATCGAAGTCTAAATACTTCCCATTTTTTAAAGTAATATCTTAA ATGGATGAGCTAGATGGAGAGACTTATGCCAAAGTACTCAAACTTTTGCATGGAAATGTTACTTGGAGAAAGATATTTTTGGACATACCCGATGCAAGGAAGAGAGATTTGATTTATAGTCATGATTATGTGATTGAGTTATTAAATGGGAATGACACAAGATGTTTTGATTGCTTTAGGATGAAAAAAGTTACATTCGTAGCTTTTTGTGAGGATTTAAAGGCGAAGACGAATTTGAAAGCATCTAGATATCTTTCTGTTCAAGAGAAAGTTTGTAACAGCCCAGGTTTTCATCCCGGACCCCATTCGGGTCGGGTCTTTACAAAGTTGCCATTTTTTTTATTAGTCATATCACATAATGAGAGAAATCGTATAGTAGCTGAAAGGTTTCAACATTCAGGTCAAACTATTTCTCGAGTTTTTAACATTGTTTTGAAAAGAGTTTGCAAGCTTGGTGTTGAAATTATTTGTCCACCAAATGGAGATAATATACCACAAGAGATTAGATCGAAGTCTAAATACTTCCCATTTTTTAAAGTAATATCTTAA MDELDGETYAKVLKLLHGNVTWRKIFLDIPDARKRDLIYSHDYVIELLNGNDTRCFDCFRMKKVTFVAFCEDLKAKTNLKASRYLSVQEKVCNSPGFHPGPHSGRVFTKLPFFLLVISHNERNRIVAERFQHSGQTISRVFNIVLKRVCKLGVEIICPPNGDNIPQEIRSKSKYFPFFKVIS Homology
BLAST of Sed0005979 vs. NCBI nr
Match: KAF3433792.1 (hypothetical protein FNV43_RR24895 [Rhamnella rubrinervis]) HSP 1 Score: 186.0 bits (471), Expect = 2.8e-43 Identity = 97/208 (46.63%), Postives = 124/208 (59.62%), Query Frame = 0
BLAST of Sed0005979 vs. NCBI nr
Match: KAF7123090.1 (hypothetical protein RHSIM_Rhsim12G0067000 [Rhododendron simsii]) HSP 1 Score: 180.6 bits (457), Expect = 1.2e-41 Identity = 97/228 (42.54%), Postives = 124/228 (54.39%), Query Frame = 0
BLAST of Sed0005979 vs. NCBI nr
Match: KAF7148819.1 (hypothetical protein RHSIM_Rhsim03G0151700 [Rhododendron simsii]) HSP 1 Score: 180.3 bits (456), Expect = 1.5e-41 Identity = 96/229 (41.92%), Postives = 124/229 (54.15%), Query Frame = 0
BLAST of Sed0005979 vs. NCBI nr
Match: XP_028094390.1 (uncharacterized protein LOC114294454 [Camellia sinensis]) HSP 1 Score: 146.7 bits (369), Expect = 1.9e-31 Identity = 71/150 (47.33%), Postives = 94/150 (62.67%), Query Frame = 0
BLAST of Sed0005979 vs. NCBI nr
Match: XP_028100667.1 (uncharacterized protein LOC114300013 [Camellia sinensis] >XP_028120812.1 uncharacterized protein LOC114318158 [Camellia sinensis]) HSP 1 Score: 146.0 bits (367), Expect = 3.2e-31 Identity = 71/150 (47.33%), Postives = 94/150 (62.67%), Query Frame = 0
BLAST of Sed0005979 vs. ExPASy TrEMBL
Match: A0A0A0LCZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G398940 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 9.1e-40 Identity = 95/178 (53.37%), Postives = 111/178 (62.36%), Query Frame = 0
BLAST of Sed0005979 vs. ExPASy TrEMBL
Match: A0A6A4KNZ4 (Myb_DNA-bind_3 domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_22962 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27 Identity = 70/160 (43.75%), Postives = 93/160 (58.13%), Query Frame = 0
BLAST of Sed0005979 vs. ExPASy TrEMBL
Match: A0A2N9GND4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28895 PE=3 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 3.5e-23 Identity = 61/148 (41.22%), Postives = 90/148 (60.81%), Query Frame = 0
BLAST of Sed0005979 vs. ExPASy TrEMBL
Match: A0A1S3E695 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like OS=Cicer arietinum OX=3827 GN=LOC105852030 PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22 Identity = 59/138 (42.75%), Postives = 83/138 (60.14%), Query Frame = 0
BLAST of Sed0005979 vs. ExPASy TrEMBL
Match: A0A3Q7Y331 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like OS=Cicer arietinum OX=3827 GN=LOC105852522 PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22 Identity = 59/138 (42.75%), Postives = 83/138 (60.14%), Query Frame = 0
BLAST of Sed0005979 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 67.8 bits (164), Expect = 1.0e-11 Identity = 39/126 (30.95%), Postives = 61/126 (48.41%), Query Frame = 0
BLAST of Sed0005979 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 59.7 bits (143), Expect = 2.8e-09 Identity = 38/130 (29.23%), Postives = 59/130 (45.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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