Sed0005845 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATCGTAGCTGCTTTGAAACATTGTGCGACATGCTAAGGACCCACGGTGGTCTTCGAGGTACGGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTCTACATATCATGGCTCATGATGTTAAGAACCATGTCGTTCGAAGAATATTTACAAGATCCGATGAAACAGTGTCGCGACACTTTCAATCTGTCCTTACTGCTGTTATTCGTTGTCATGACATTTTGTTCAAGAAACCTGAACCTATCCAACCATCATGCACCGACAGTAGATGGAAGTGGTTTGAGGTACCATTATTTTACCTTTATAAAATAGATTCCTTGTAGGAACCAAATTTCATTTCTTCCTTCGAACTATGCAGAATTGTCTAGGTGCATTGGATGATACTCATATAGAGTTACAAGTCCCAGTTGAAAATCGTGCCTCCTTTAGAAATAGGAAGTGTATCATCACAACTAACATTCTTGTTGTATGCGCTTCAAGCGGAGAGTTCATATACGTACTAGCTGGGTGGGAGGGATCAGCAGTTGACTCTAGAGTTCTTAGGGATGCTTTATCCCGTAATAATGGATTTCAAGTCCCTCATGGTAATTAAGGACTAAAAGAAAAGGCTACTTTCACTTATAGTGAATGTATAATAACCTAGTGTTTATTGATCCAGGATACTATTACCTTTGTGATGCAGGTTATCCAAATGTTGATGGATTCCTAGCTCCCTATAGAGGCGAACGTTATCATCTATCGGATTGGAGGGGTAGCAATCCACCACGGAATCCAAGAGAGTTTTTTAATAAGGCAAACTCCTCGGCACGAAATATAATAGAAAGAGCATTCGGTGCATTAAAAAATCGTTGGGCTATTCTACGACACAAGTCTTACTATCCTCCAAAAGTGCAAGTGAAGATCATAACAGCTTGTTGTCTCCTACATAATTTAATATGTAGGGAGATGGGCTCTACGATTGGTTTAGAGTTATTAGGGGAAAACGATGCAACACTATACCAAGAGGAAATGGACGATACCCCAACGATTAATTTCGTCGAGACATTGCCTCTTTGGACTGTATTTCGAGATTCTATGGCCCAAAGAATGTTTGACACAGCCCAAAACTAGTAGAAATTAGACTTATAATTTTTTTTTAGTGACTATAACTTTTATGAATCAAGAATGACATAATATGACTTTTATGGGAAATGATACTTGTCTTGTATTATATAATGAACGATTCTAAATTAATGGTATTCCTTACCATTTATCTCTTATGTACAACTTCCTTGTAGCAACATGGCTGCGATAGGGAGAAACATTCGACACAGTTGGACAACAATAGAAGATAGTACTTTAGTCCAATCACTAATCGAACTTGTACAAGAGGGGGGTGGAGATCAGATAATGGTACATTTAAGAATAAGTACCATAATGAACTACTTCGACTAATGTACCTAAAACTACCTGGATGCCCAATTACATCTACCACTGTGATTGACACTAGAGTGAAGAATCTGAAACGACAATACCAAGCTATTGCCGAGATGCTGGGCAATACTTGTAGTGGATTTGGCTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTCGACAATTGGGTTCAAGTATTGAAGAATAGTTATAATATAAAATATATATATATATATATATATATATATATATGAAATTTCAATTTATTTACGAATCGTATGTTCTTAATTTTTTCAGACACACCCAAATGCAAAAGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCAAGATATTGCAGAAGAAGATTCGAATGCAGAGGTCGGTGA ATGAATCGTAGCTGCTTTGAAACATTGTGCGACATGCTAAGGACCCACGGTGGTCTTCGAGGTACGGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTCTACATATCATGGCTCATGATGTTAAGAACCATGTCGTTCGAAGAATATTTACAAGATCCGATGAAACAGTGTCGCGACACTTTCAATCTGTCCTTACTGCTGTTATTCGTTGTCATGACATTTTGTTCAAGAAACCTGAACCTATCCAACCATCATGCACCGACAGTAGATGGAAGTGGTTTGAGTACCATAATGAACTACTTCGACTAATGTACCTAAAACTACCTGGATGCCCAATTACATCTACCACTGTGATTGACACTAGAGTGAAGAATCTGAAACGACAATACCAAGCTATTGCCGAGATGCTGGGCAATACTTGTAGTGGATTTGGCTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTCGACAATTGGGTTCAAACACACCCAAATGCAAAAGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCAAGATATTGCAGAAGAAGATTCGAATGCAGAGGTCGGTGA ATGAATCGTAGCTGCTTTGAAACATTGTGCGACATGCTAAGGACCCACGGTGGTCTTCGAGGTACGGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTCTACATATCATGGCTCATGATGTTAAGAACCATGTCGTTCGAAGAATATTTACAAGATCCGATGAAACAGTGTCGCGACACTTTCAATCTGTCCTTACTGCTGTTATTCGTTGTCATGACATTTTGTTCAAGAAACCTGAACCTATCCAACCATCATGCACCGACAGTAGATGGAAGTGGTTTGAGTACCATAATGAACTACTTCGACTAATGTACCTAAAACTACCTGGATGCCCAATTACATCTACCACTGTGATTGACACTAGAGTGAAGAATCTGAAACGACAATACCAAGCTATTGCCGAGATGCTGGGCAATACTTGTAGTGGATTTGGCTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTCGACAATTGGGTTCAAACACACCCAAATGCAAAAGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCAAGATATTGCAGAAGAAGATTCGAATGCAGAGGTCGGTGA MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSRYCRRRFECRGR Homology
BLAST of Sed0005845 vs. NCBI nr
Match: TYK05796.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 204.9 bits (520), Expect = 6.7e-49 Identity = 103/231 (44.59%), Postives = 131/231 (56.71%), Query Frame = 0
BLAST of Sed0005845 vs. NCBI nr
Match: KAG6532280.1 (hypothetical protein ZIOFF_006120 [Zingiber officinale]) HSP 1 Score: 201.8 bits (512), Expect = 5.7e-48 Identity = 96/205 (46.83%), Postives = 130/205 (63.41%), Query Frame = 0
BLAST of Sed0005845 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]) HSP 1 Score: 198.4 bits (503), Expect = 6.3e-47 Identity = 107/253 (42.29%), Postives = 138/253 (54.55%), Query Frame = 0
BLAST of Sed0005845 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]) HSP 1 Score: 197.6 bits (501), Expect = 1.1e-46 Identity = 100/231 (43.29%), Postives = 132/231 (57.14%), Query Frame = 0
BLAST of Sed0005845 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]) HSP 1 Score: 197.6 bits (501), Expect = 1.1e-46 Identity = 100/231 (43.29%), Postives = 132/231 (57.14%), Query Frame = 0
BLAST of Sed0005845 vs. ExPASy TrEMBL
Match: A0A5D3C620 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003010 PE=4 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 3.3e-49 Identity = 103/231 (44.59%), Postives = 131/231 (56.71%), Query Frame = 0
BLAST of Sed0005845 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 3.0e-47 Identity = 107/253 (42.29%), Postives = 138/253 (54.55%), Query Frame = 0
BLAST of Sed0005845 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 5.2e-47 Identity = 100/231 (43.29%), Postives = 132/231 (57.14%), Query Frame = 0
BLAST of Sed0005845 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 5.2e-47 Identity = 100/231 (43.29%), Postives = 132/231 (57.14%), Query Frame = 0
BLAST of Sed0005845 vs. ExPASy TrEMBL
Match: A0A5D3BSX2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001810 PE=3 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 2.0e-43 Identity = 115/346 (33.24%), Postives = 140/346 (40.46%), Query Frame = 0
BLAST of Sed0005845 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 68.9 bits (167), Expect = 5.4e-12 Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 0
BLAST of Sed0005845 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 62.8 bits (151), Expect = 3.8e-10 Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 0
BLAST of Sed0005845 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08 Identity = 27/83 (32.53%), Postives = 46/83 (55.42%), Query Frame = 0
BLAST of Sed0005845 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 4.9e-05 Identity = 18/71 (25.35%), Postives = 38/71 (53.52%), Query Frame = 0
BLAST of Sed0005845 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). ) HSP 1 Score: 45.8 bits (107), Expect = 4.9e-05 Identity = 18/71 (25.35%), Postives = 38/71 (53.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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