Sed0005845 (gene) Chayote v1

Overview
NameSed0005845
Typegene
OrganismSechium edule (Chayote v1)
DescriptionMyb_DNA-bind_3 domain-containing protein
LocationLG13: 6856259 .. 6858116 (+)
RNA-Seq ExpressionSed0005845
SyntenySed0005845
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGTAGCTGCTTTGAAACATTGTGCGACATGCTAAGGACCCACGGTGGTCTTCGAGGTACGGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTCTACATATCATGGCTCATGATGTTAAGAACCATGTCGTTCGAAGAATATTTACAAGATCCGATGAAACAGTGTCGCGACACTTTCAATCTGTCCTTACTGCTGTTATTCGTTGTCATGACATTTTGTTCAAGAAACCTGAACCTATCCAACCATCATGCACCGACAGTAGATGGAAGTGGTTTGAGGTACCATTATTTTACCTTTATAAAATAGATTCCTTGTAGGAACCAAATTTCATTTCTTCCTTCGAACTATGCAGAATTGTCTAGGTGCATTGGATGATACTCATATAGAGTTACAAGTCCCAGTTGAAAATCGTGCCTCCTTTAGAAATAGGAAGTGTATCATCACAACTAACATTCTTGTTGTATGCGCTTCAAGCGGAGAGTTCATATACGTACTAGCTGGGTGGGAGGGATCAGCAGTTGACTCTAGAGTTCTTAGGGATGCTTTATCCCGTAATAATGGATTTCAAGTCCCTCATGGTAATTAAGGACTAAAAGAAAAGGCTACTTTCACTTATAGTGAATGTATAATAACCTAGTGTTTATTGATCCAGGATACTATTACCTTTGTGATGCAGGTTATCCAAATGTTGATGGATTCCTAGCTCCCTATAGAGGCGAACGTTATCATCTATCGGATTGGAGGGGTAGCAATCCACCACGGAATCCAAGAGAGTTTTTTAATAAGGCAAACTCCTCGGCACGAAATATAATAGAAAGAGCATTCGGTGCATTAAAAAATCGTTGGGCTATTCTACGACACAAGTCTTACTATCCTCCAAAAGTGCAAGTGAAGATCATAACAGCTTGTTGTCTCCTACATAATTTAATATGTAGGGAGATGGGCTCTACGATTGGTTTAGAGTTATTAGGGGAAAACGATGCAACACTATACCAAGAGGAAATGGACGATACCCCAACGATTAATTTCGTCGAGACATTGCCTCTTTGGACTGTATTTCGAGATTCTATGGCCCAAAGAATGTTTGACACAGCCCAAAACTAGTAGAAATTAGACTTATAATTTTTTTTTAGTGACTATAACTTTTATGAATCAAGAATGACATAATATGACTTTTATGGGAAATGATACTTGTCTTGTATTATATAATGAACGATTCTAAATTAATGGTATTCCTTACCATTTATCTCTTATGTACAACTTCCTTGTAGCAACATGGCTGCGATAGGGAGAAACATTCGACACAGTTGGACAACAATAGAAGATAGTACTTTAGTCCAATCACTAATCGAACTTGTACAAGAGGGGGGTGGAGATCAGATAATGGTACATTTAAGAATAAGTACCATAATGAACTACTTCGACTAATGTACCTAAAACTACCTGGATGCCCAATTACATCTACCACTGTGATTGACACTAGAGTGAAGAATCTGAAACGACAATACCAAGCTATTGCCGAGATGCTGGGCAATACTTGTAGTGGATTTGGCTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTCGACAATTGGGTTCAAGTATTGAAGAATAGTTATAATATAAAATATATATATATATATATATATATATATATATGAAATTTCAATTTATTTACGAATCGTATGTTCTTAATTTTTTCAGACACACCCAAATGCAAAAGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCAAGATATTGCAGAAGAAGATTCGAATGCAGAGGTCGGTGA

mRNA sequence

ATGAATCGTAGCTGCTTTGAAACATTGTGCGACATGCTAAGGACCCACGGTGGTCTTCGAGGTACGGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTCTACATATCATGGCTCATGATGTTAAGAACCATGTCGTTCGAAGAATATTTACAAGATCCGATGAAACAGTGTCGCGACACTTTCAATCTGTCCTTACTGCTGTTATTCGTTGTCATGACATTTTGTTCAAGAAACCTGAACCTATCCAACCATCATGCACCGACAGTAGATGGAAGTGGTTTGAGTACCATAATGAACTACTTCGACTAATGTACCTAAAACTACCTGGATGCCCAATTACATCTACCACTGTGATTGACACTAGAGTGAAGAATCTGAAACGACAATACCAAGCTATTGCCGAGATGCTGGGCAATACTTGTAGTGGATTTGGCTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTCGACAATTGGGTTCAAACACACCCAAATGCAAAAGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCAAGATATTGCAGAAGAAGATTCGAATGCAGAGGTCGGTGA

Coding sequence (CDS)

ATGAATCGTAGCTGCTTTGAAACATTGTGCGACATGCTAAGGACCCACGGTGGTCTTCGAGGTACGGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTCTACATATCATGGCTCATGATGTTAAGAACCATGTCGTTCGAAGAATATTTACAAGATCCGATGAAACAGTGTCGCGACACTTTCAATCTGTCCTTACTGCTGTTATTCGTTGTCATGACATTTTGTTCAAGAAACCTGAACCTATCCAACCATCATGCACCGACAGTAGATGGAAGTGGTTTGAGTACCATAATGAACTACTTCGACTAATGTACCTAAAACTACCTGGATGCCCAATTACATCTACCACTGTGATTGACACTAGAGTGAAGAATCTGAAACGACAATACCAAGCTATTGCCGAGATGCTGGGCAATACTTGTAGTGGATTTGGCTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTCGACAATTGGGTTCAAACACACCCAAATGCAAAAGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCAAGATATTGCAGAAGAAGATTCGAATGCAGAGGTCGGTGA

Protein sequence

MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSRYCRRRFECRGR
Homology
BLAST of Sed0005845 vs. NCBI nr
Match: TYK05796.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.9 bits (520), Expect = 6.7e-49
Identity = 103/231 (44.59%), Postives = 131/231 (56.71%), Query Frame = 0

Query: 1   MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSR 60
           M+R  F  LC +L+T  GL  T+ +DVEEMVAMFLH++AHD+KN V++R F RSDETVSR
Sbjct: 40  MDRRTFAILCHLLQTVSGLSSTEIVDVEEMVAMFLHVLAHDMKNSVIQREFVRSDETVSR 99

Query: 61  HFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYHNELLRLMYLKLPGCPITSTTVI 120
           HF  VL  V+R ++ L K+P P+  +C D RW+ FE     L   Y+K+   P T     
Sbjct: 100 HFNLVLLTVVRLYEELIKRPVPVTNNCKDQRWQCFENCLGALDGTYIKV-NVPATDRPTF 159

Query: 121 DTRVKNLKRQY-----------------------------------QAIAEMLGNTCSGF 180
            TR   +   Y                                    AI EM G  CSGF
Sbjct: 160 RTRKGEIATNYVNLKPYPETCLDEGGGGHSCGVFNEVGVNGGGNWIMAITEMWGPACSGF 219

Query: 181 GWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACG 197
           GWND+ KCI  E  +FDNWV++HP  KGL NKPFP+YD+L Y+FG+DRA G
Sbjct: 220 GWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATG 269

BLAST of Sed0005845 vs. NCBI nr
Match: KAG6532280.1 (hypothetical protein ZIOFF_006120 [Zingiber officinale])

HSP 1 Score: 201.8 bits (512), Expect = 5.7e-48
Identity = 96/205 (46.83%), Postives = 130/205 (63.41%), Query Frame = 0

Query: 1   MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSR 60
           M+R  F  LC +L  H  L+G   + + E+V  FLHI+AH+VKN V++    RS ET+SR
Sbjct: 1   MDRRSFSKLCYLLMMHRKLKGNRNMSINELVISFLHIIAHNVKNRVLKCQTARSGETISR 60

Query: 61  HFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYHN--------ELLRLMYLKLPGC 120
            F  +L +++R H+IL KKPEPI   CTD RWKWF+  N         L +L+  KLP  
Sbjct: 61  QFHLILNSILRLHNILLKKPEPIPEDCTDERWKWFKSENGFRIWYFVHLEKLVAAKLPSS 120

Query: 121 PITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAK 180
            + +T  ID+R K LKR++ AI +ML N  SGFGWND  KCI     VF++WV+ HP   
Sbjct: 121 SLKATPHIDSRYKLLKRRFHAITKML-NRSSGFGWNDVVKCIITTKDVFNDWVKRHPTTI 180

Query: 181 GLNNKPFPHYDDLAYIFGKDRACGS 198
           GL NK FP++DDL +++GKD A G+
Sbjct: 181 GLRNKEFPYHDDLMFVWGKDHATGA 204

BLAST of Sed0005845 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 6.3e-47
Identity = 107/253 (42.29%), Postives = 138/253 (54.55%), Query Frame = 0

Query: 1   MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSR 60
           M+R CF  LC MLRT GGL  T Y+DV+EMV +FLHI+AHDVKN V RR   RS ETVSR
Sbjct: 1   MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60

Query: 61  HFQSVLTAVIRCHDILFKKPEPIQPSC-----------TDSRWKWFEYHNELLR------ 120
           HF +VL AV+R H+IL K+P+P+  SC           + S    + + N  +       
Sbjct: 61  HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120

Query: 121 --LMYLKLPGCPITSTTVIDTRVKNLK--------------------------------- 180
             ++ +++       T +  T  K  K                                 
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180

Query: 181 ---RQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDL 199
              +QY AIAEM+G  CSGFGWN+  KCIEVE  VFD+WV+ HPNA+GL NKPFP++ DL
Sbjct: 181 GYLKQYTAIAEMMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDL 240

BLAST of Sed0005845 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-46
Identity = 100/231 (43.29%), Postives = 132/231 (57.14%), Query Frame = 0

Query: 12  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIR 71
           MLRT GGL  T Y+DVEEMV +FLHI+AHDVKN V RR F RS ETVSRHF  VL  V+R
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 72  CHDILFKKPEPIQPSCTDSRWKWFE----------------------------------- 131
            H+IL K+P+ +  SC+  +W+WF+                                   
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 132 ---------YHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGW 191
                    Y  ++ +LM  K+    I  T  +++ VK LK+QY  IAEM+G  CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 192 NDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSR 199
           N + KCIE E +V ++WV+ H NA+ L NKPFP++ DL  +FG+DRA G +
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGK 231

BLAST of Sed0005845 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-46
Identity = 100/231 (43.29%), Postives = 132/231 (57.14%), Query Frame = 0

Query: 12  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIR 71
           MLRT GGL  T Y+DVEEMV +FLHI+AHDVKN V RR F RS ETVSRHF  VL  V+R
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 72  CHDILFKKPEPIQPSCTDSRWKWFE----------------------------------- 131
            H+IL K+P+ +  SC+  +W+WF+                                   
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 132 ---------YHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGW 191
                    Y  ++ +LM  K+    I  T  +++ VK LK+QY  IAEM+G  CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 192 NDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSR 199
           N + KCIE E +V ++WV+ H NA+ L NKPFP++ DL  +FG+DRA G +
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGK 231

BLAST of Sed0005845 vs. ExPASy TrEMBL
Match: A0A5D3C620 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003010 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 3.3e-49
Identity = 103/231 (44.59%), Postives = 131/231 (56.71%), Query Frame = 0

Query: 1   MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSR 60
           M+R  F  LC +L+T  GL  T+ +DVEEMVAMFLH++AHD+KN V++R F RSDETVSR
Sbjct: 40  MDRRTFAILCHLLQTVSGLSSTEIVDVEEMVAMFLHVLAHDMKNSVIQREFVRSDETVSR 99

Query: 61  HFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYHNELLRLMYLKLPGCPITSTTVI 120
           HF  VL  V+R ++ L K+P P+  +C D RW+ FE     L   Y+K+   P T     
Sbjct: 100 HFNLVLLTVVRLYEELIKRPVPVTNNCKDQRWQCFENCLGALDGTYIKV-NVPATDRPTF 159

Query: 121 DTRVKNLKRQY-----------------------------------QAIAEMLGNTCSGF 180
            TR   +   Y                                    AI EM G  CSGF
Sbjct: 160 RTRKGEIATNYVNLKPYPETCLDEGGGGHSCGVFNEVGVNGGGNWIMAITEMWGPACSGF 219

Query: 181 GWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACG 197
           GWND+ KCI  E  +FDNWV++HP  KGL NKPFP+YD+L Y+FG+DRA G
Sbjct: 220 GWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATG 269

BLAST of Sed0005845 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 3.0e-47
Identity = 107/253 (42.29%), Postives = 138/253 (54.55%), Query Frame = 0

Query: 1   MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSR 60
           M+R CF  LC MLRT GGL  T Y+DV+EMV +FLHI+AHDVKN V RR   RS ETVSR
Sbjct: 1   MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60

Query: 61  HFQSVLTAVIRCHDILFKKPEPIQPSC-----------TDSRWKWFEYHNELLR------ 120
           HF +VL AV+R H+IL K+P+P+  SC           + S    + + N  +       
Sbjct: 61  HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120

Query: 121 --LMYLKLPGCPITSTTVIDTRVKNLK--------------------------------- 180
             ++ +++       T +  T  K  K                                 
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180

Query: 181 ---RQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDL 199
              +QY AIAEM+G  CSGFGWN+  KCIEVE  VFD+WV+ HPNA+GL NKPFP++ DL
Sbjct: 181 GYLKQYTAIAEMMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDL 240

BLAST of Sed0005845 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 5.2e-47
Identity = 100/231 (43.29%), Postives = 132/231 (57.14%), Query Frame = 0

Query: 12  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIR 71
           MLRT GGL  T Y+DVEEMV +FLHI+AHDVKN V RR F RS ETVSRHF  VL  V+R
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 72  CHDILFKKPEPIQPSCTDSRWKWFE----------------------------------- 131
            H+IL K+P+ +  SC+  +W+WF+                                   
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 132 ---------YHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGW 191
                    Y  ++ +LM  K+    I  T  +++ VK LK+QY  IAEM+G  CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 192 NDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSR 199
           N + KCIE E +V ++WV+ H NA+ L NKPFP++ DL  +FG+DRA G +
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGK 231

BLAST of Sed0005845 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 5.2e-47
Identity = 100/231 (43.29%), Postives = 132/231 (57.14%), Query Frame = 0

Query: 12  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIR 71
           MLRT GGL  T Y+DVEEMV +FLHI+AHDVKN V RR F RS ETVSRHF  VL  V+R
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 72  CHDILFKKPEPIQPSCTDSRWKWFE----------------------------------- 131
            H+IL K+P+ +  SC+  +W+WF+                                   
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 132 ---------YHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGW 191
                    Y  ++ +LM  K+    I  T  +++ VK LK+QY  IAEM+G  CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 192 NDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSR 199
           N + KCIE E +V ++WV+ H NA+ L NKPFP++ DL  +FG+DRA G +
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGK 231

BLAST of Sed0005845 vs. ExPASy TrEMBL
Match: A0A5D3BSX2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001810 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.0e-43
Identity = 115/346 (33.24%), Postives = 140/346 (40.46%), Query Frame = 0

Query: 1   MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSR 60
           M+R CF  L  +LRT  GL     +DVEEMV MFLHI+AHDVKN +++R F RS ET+S 
Sbjct: 1   MDRRCFAILYHLLRTIDGLTSAKVVDVEEMVVMFLHILAHDVKNRIIQREFMRSGETISS 60

Query: 61  HFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYH---------------------- 120
           HF  VL A+IR HD L KKP+ +   C D RW+WFE H                      
Sbjct: 61  HFHMVLLAIIRLHDELLKKPQSVANDCIDQRWRWFEEHICLELRASTPTTFDLVNNHHIC 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 VAELPRCPRVTTNDIVPINAIFQLIAATFKSRNVTTSYYYLVDAGYPNVEGFLAPYRGQH 180

Query: 181 ------------------------------------------------------------ 199
                                                                       
Sbjct: 181 YHLQEWRGAENTPSNSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKTYYPVERSDNET 240

BLAST of Sed0005845 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 5.4e-12
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 1   MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSR 60
           M++  F  LCD+L+T G LR T+ I +E  +A+FL I+ H+++   V+ +F  S ET+SR
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFQSVLTAVI 71
           HF +VL AVI
Sbjct: 108 HFNNVLNAVI 117

BLAST of Sed0005845 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-10
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 0

Query: 1   MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSR 60
           M+  CF TLC+ML+T+  L+ T  I +EE VAMFL I  H+     V   F R+ ETV R
Sbjct: 72  MSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQR 131

Query: 61  HFQSVLTA--VIRCHDI-------LFKKPEPIQPSCTDSR-WKWF 96
            F+ VLTA  ++ C  I       L++ PE +Q    D R W +F
Sbjct: 132 KFREVLTATELLACDYIRTPTRQELYRIPERLQ---VDQRYWPYF 173

BLAST of Sed0005845 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08
Identity = 27/83 (32.53%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 119 VIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKP 178
           V+  R K+L+R Y  I  +L    +GF W+ +   +  +  +++ ++Q HP A+    K 
Sbjct: 377 VLKNRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKT 436

Query: 179 FPHYDDLAYIFGKDRACGSRYCR 202
            P Y +L +IFGK+ + G RY R
Sbjct: 437 IPSYPNLCFIFGKETSDG-RYTR 456

BLAST of Sed0005845 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 4.9e-05
Identity = 18/71 (25.35%), Postives = 38/71 (53.52%), Query Frame = 0

Query: 119 VIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKP 178
           V+  R K L+  ++++  +L     GF W+D  + +  +  V+D +++ HP+++    K 
Sbjct: 65  VLKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKS 124

Query: 179 FPHYDDLAYIF 190
            P Y DL  ++
Sbjct: 125 IPCYKDLCLVY 133

BLAST of Sed0005845 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 45.8 bits (107), Expect = 4.9e-05
Identity = 18/71 (25.35%), Postives = 38/71 (53.52%), Query Frame = 0

Query: 119 VIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKP 178
           V+  R K L+  ++++  +L     GF W+D  + +  +  V+D +++ HP+++    K 
Sbjct: 65  VLKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKS 124

Query: 179 FPHYDDLAYIF 190
            P Y DL  ++
Sbjct: 125 IPCYKDLCLVY 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK05796.16.7e-4944.59retrotransposon protein [Cucumis melo var. makuwa][more]
KAG6532280.15.7e-4846.83hypothetical protein ZIOFF_006120 [Zingiber officinale][more]
TYK07921.16.3e-4742.29hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa][more]
KAA0033487.11.1e-4643.29uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa][more]
TYK26842.11.1e-4643.29uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C6203.3e-4944.59Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C7T43.0e-4742.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SW625.2e-4743.29Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DTL05.2e-4743.29Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3BSX22.0e-4333.24Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
Match NameE-valueIdentityDescription
AT5G41980.15.4e-1245.71CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT1G43722.13.8e-1040.95unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G24960.22.1e-0832.53unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G02210.14.9e-0525.35unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.24.9e-0525.35unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 96..197

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0005845.1Sed0005845.1mRNA