Sed0005824 (gene) Chayote v1

Overview


Name	Sed0005824
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SWIB domain-containing protein
Location	LG02: 4017838 .. 4035968 (-)
RNA-Seq Expression	Sed0005824
Synteny	Sed0005824

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTATTTTACCCCCTCAACAAACGAACACCTCCTTTTCCGCCGTGCTGCGCCACCGAAACCCTCACCGACGTCGTCTACTTCCACGCGCACGAGCTCCAGCAGTCGTCACCTTTCGCCCCGCTGAGCCGCAACACCTCCGCTCGTCAACGACACCAGTGCCACACCGTCCAAGTTCGCAAGTCGCGAGTTCGCTGCCCAGCCTCCGTTCGACAGCGCCTCAGCAACGGCGCACTAGTCGCGCATTCCAGCGGCCCCAACACGCGCGTGGCTCGCCCCTGCTGTGCCGGCCTTGTGCAGCTGGTTCCTTGCGCCTCGTTAGTTCTTGTCAGCCCTATTTCATTGTGTTTCGGGGTAAGTTTCCTCTCTGCTCAGTGGGTCGATGGTTTGAGTCAATTTTGGGGTTTGATTGTACTGTTGGGTATTTGTGTTAGCTGATTGTGATTATTTGTTAGGTTGGGTGTTTATCGCTGATTTCTGCCGTAGTTCAAAGGTTGCTCTCAGTATCATCTTTCCGGGTAAGAACTTTCTCACTCGGTGATGCTGCTAAAACATATGCGATGACTGTGGGTATGGGATACATAATGTATGTTTGATTCTCTATTGTTTCGGGATTATCAATTATGGGGTCCTGGGTGCCACTTCGTATGCTTTGTTTATTCTGTGTGCCTTGTGCTTCCGGATTATGTGGTCCGAGGGTGCTATTTTATATGTTTATTATAATTGTATTTCTTATAAGCATGATAGGATTATGGAGTTTTAACATGTTGTTACTCTTGTTGTTGGTTATGTGGATCTCTTGGTACGTGGGTGAGTTAGTTTGTGATGACATATGTTGGTGAATGGCTAGTTTCGATCACGTGATGAGTAGTATCCTATTAGGATGATCGTGTGTATTGTTTATGCATGTTTGGTGATCTATTTAAGATTGAGTTGATAAGCACGTGTAGTTAGAAATGTTTAGTTGTCATCACCTAGAGGCTGTAGAAGACGCAATGTAATGTTTTCCTCACTGGTCGGGACTGTTGATGATTGATTCCCACCCCCGATAGCCGGGGATGTGATGTAGCATGCCGCTCCCGACGATGTCTAGTTTGTATCCCTTTTAGGTGGGCCCTGATCATAGTGTACGCCTGCAGTTACTGGTGGTTCGAGATGAGGCGACAGTGCTTGAATTGGGAGAAACGATCGGATTTCAGGAAGATTTGCCTGAGATGGTAGAGACAGTGGGAACTGAGTGTGCCACGAAATGGGTGCACTATCCCTAAATTCATTGGCCGGGCTAAGCTCCCCAAAAGTGTTGAAAGTGCGTGGGAGTATCTTGGGTTTGGAAGTAGCAATTCTGGTGGATACCGGAGCAACACACAATTTCATTTACGAGGATGTGGTTTCTAAATTAGGTTTGACTGTGTCACCATCTGACAAGTACGGAATAGTCCTGGGTACTGGCGGTTCGGTGAGAGTAGCTGGAGTGTGTAGGGATGTAGTACTCCAACTTGCTGAACTTCAGATTATCCATGATTTTTTACCATTGTCATTGGGAAGCGCGGATGTCATTCTAGGAGTGACATGGCTAGAAACTCTCGAGAAGGTGGAGTTTGACTATCCAGCTTTACATATGAGGTTCGTGGTTGGACCCTGGACCGTGAAGCTACAAGGGGATCCCAGTCTAGTTAAAGCGCAAGTGTCCCTAAAATCTATGATGAAGTCTATGCGTGTTGAAGACCATGGATTATTGATTGAGCTTAATCTGTTAGACGTCAAGGAAGGAGAAGGTGAGCCTGCATCACCTCCTACGTGGTCTGAGGTGCCTACCGAATTACGTCTATTGTTATCTCGATATGCCGTGATTTTTGAATCATTGTCTATTCTTCCTCTGCACCGAAATTGTGACCATGCGATCGAATTGTATGCGAGAAAAGAATCGATAAATGTTCGACCGTATCGATATCCCCAATTTCAAAAGAATGAAATTGAAAAGATGGTGAAAGATATGTTGAGGCAGGGATTATCTGTCCTAGTACTAGTTCTTTTTCGAGCCCGGTGTTGGTTAAGAAGGACGATAGTTGGAGTTTTTATGTGGATTACAAGGCACTGAACTTGGCCACCATTCCCGATAAGTTCCCTATACCGCTAGTTGACGAGTTGTTGGATGACCTGCATGGAGCAACAATTTTTTCTAAGATTGACTTGAAAGCGGGATATCACCAAATTCTGGTAAAGCCAGCAGGTATTCCAAAGACGGCCTTTAGAACTCACGAGGGCCATTATGAGTTTCTTGTAATGCTGTTTGGCCTAAGGAATGCACCAGCTACTTTCCAGTCGGTGATGAATGAGGTTATGCGCCCTTATCTACGGAAGTTTGTGTTGGTTTTTTTGACGATATCTTGATCTATAGTACATCGATGGAGGAGCATGTTGAGCACTTGACTAAGGTTTTTGAGGTGCTTCATACTCACGAGTTTGTGGTCAATGCGAAGAAATGTCAGTTTGATGTAGCTCGTATCGAGTATTTGGGACATTTCATTTCGGCAGAGGGAGTATCTGCGGATCCAGCTAAATTAGAAGCTATGGTGAATTGGCTGAGTCCTATTTCTATTCGGGAGCTTCGGGGTTCCTTGGGTTGACAGGATACTACGGACGTTTCGTAGCAAATTACGGAGCAATGGCATTTCCATTGACTCAATTGCTCAAAAAGGGAAAGTTTGTTTGGTCAACCGAGGCTGAGGACGCTTTTCAACGTTTGAAACATGCTATGATTAGTGTGCCAGTGCTACATTTACCAGATTTTTCTCATACGTTTGTGGTCGAGATGGATGCTTTTGGTATTGGCGTGGGTGCTGTTTTAATGCAAAAGGGTCAACCCATTGCGTACTTTAGCTGAGCATTACCGGTTGCACATCGTTACAAGCCTGTGTATGAACGGGAATTGATGGCTATTGTATTTGCAGTACAACGTTGGAGAGCTTATCTTCTGGGCCAACATTTCATAGTGCGGACGGATCAGAAGAGCCTTAAGTTCCTGTTGGAACAACGGGTAGTAGTGGGGAGTACCAACGTTGGGTGACTAAGCTCTTGGGATATGATTTCCATATTGAGTACAAGAAAGGCTTAGAGAATTTCTCCGTGAATGCACTATCTCGCTTACCATTGGCTTGCGAATTGGGAATGGTGAGCTGTGTCTCTGGAATTAACACAGACGTGTTTCTCGAGCAAGTTAAGGCTGATCCGTTGACCGTTTATACAACATTGTTGGCCGGTGAATCAGCTCCTAAGGGGTTCTCATTGCACCGAGAATTGTTATGCTTCAATGGTCGATTGGTGTTGCCCTCTGATTCACCAACCATTCCTTTGCTTCTGTAGGAGTTCCACTCCGAGCCGATTGGTGGTCATCATGGTGCCTTAAGACGTATCAACGACTGGCTAAGGAGATTTATTGGGCGGGTATGAAAGCGCGTCTGCGCATCTGCGAGCTTTGGTGGCCGAATGCGTTGTGTTAAAAAATCAAACCAAACATTTTTCGTTAGCACCAGCAGGGTTATTACAACCATTGCCGATCCTGAGCGTGTGTGAGAAGACGTGTTGATGGATTTTGTGGAGGGGCTACCATGTTCTGTTGGGTTTGACACTATTTTGGTGGTGGTGGATCGTTTATCAAAGTATGCTCACTTTATCATGGTAAACACCCATATACTTCGTTGGCAATTGCACTCTTGTTTATTTGGGAAGTGGTGCGATTACATGGAGTACCGTGTAGTATTGTGTCGGATCGTGATAAGGTGTTCACGAGCTCTTTTTGGGAGGAATTGTTTCGTGCCACAGGCACTAAACTTTGTCAGAGCACGACGTATCATCCCCAGACGAACGGGAAAACTGAGGTGGTTAACCGTTGCCTAGAATTGTAGCTTCGTTGTTTTGTTATGACGCAACCGAAGCAATGGTCTAAGTGGATCCCGTGGGCTGAATTCAGTTTCAACACTTACCATTCGTCCGCAAGATTGACACCTTTTGAGGTGGTTTATGGTCGTGTACCATCTTCTATTTTAGGCTATGAGGTGGGGTAGAGTCCATTATCGATTGTGGATTTCTTGTTGGTTGAGCGTGATAAGATATTGGCCACTTAAGGCTTTGCTTTTGCGTCCCCAACAACTCATGATTAAACAGGCGGATGCTAAACGACGTGATGTTCACTTTGAGGTGGGTGATTTGGTGTACCTCAAATTGCGACCTTATCACCAACTTTCAGTAGCTCGGTTCAAGCATTCCAAGCTTGCTCCGCGCTTTATTGGTCCTTACCGAATACTAGCGAAAGTGGGAAAGGTAGCTTATCGGTTGGAACTCCTAGATTCTGTTCGAATTCATCTCGTATTTCATGTTTCTGTGTTGCGTAAGGCAGTTGGGACTTCTGTGCCCGTTTTTCCGGTTCATTCGGGATTACGAGATGATTTGGTGTTTGCTTTTCGGCCATTAGCGGTTTTGGGCATGAGCGAATCTGTTTCTGTGCCAGATGATCGCGAGGTTTTGATTCAGTGGGAGACTGGTTTTCCTGAGGATGCGACGTGGGAGTCTGCTAGTTTCATTCAGACACAGTTTCCTGATTTCCACCTTGAGGACAAGGTGGTTTTTTGGGGGGCGGCGCGGGTATTGATATGTCCCCGGTAGTTACGTCTTTGGTAGTTAAATATGTTTACTCTAGGTGCAAGAAACAGGGGGTTGGTTACGTTTAAAAGAGCATTGTTGTATTTGTTGGAGGGGGTATAAATAGAAGAAGTTAGGTAACAGTAGGGCATTGATTTTCTTCATTGTTTTGGTATCACGTTTGAGGTTGGAGAGTGACAAGCTCTAAAACTCCTTTTGTTGTGTGTTCTTTGTGAATTGTTAATAAAATTGGCAGATTCTACCAGGGTCTTAGAGTGCATAATGTGATGTGTTCATTCCATGATGGTCACCTACTTAGAAATTAATTTTCCTACGGGTTTCCTTGACATCCAAATACTGTAGAGTCTGGCAATATGTCCCGTGACATTAGTTGAGGTGCGCGCAAGTTGGCCCGAACAGTAAAAGATATATAAAAAATGTTGAAAATAAAAGAATTATGAAATAACATTTTTTTATATAAATATTGGAACATATAAAGGAAAATACATTAAAAAAAATCAGTTAATTTACCATTATTTATTTTCTAATAAGTTTGTTTTAAAAAAAGGTGGGTTTAGAAAAATCTATTTTTACCATTTAAAACCACTTTCGTATTTTATTTAAATTGTAAATAAAATAAATAGATAAACATAATATATACATATATATATATATATATTTGGAACTAGGGTTTATCTGATTGGCTCCATTTATGAAAGTTTTTTGGAATTTCGATGAAATATATGCTCTATTTTTATTTTATACGAGAAAGGAAGAAATACGAGAAAGAGAGTTTTCAATCCCCTGAATTCTAATCCCCGAGTTTGCATTGTTCAAAACCCTAGAATCAAATTTCCTGGAATCAAATTCCCTGGAATCAAAACCCTCGAAATGAAATCCCACACTTTTTAGATTTACTAAACATTGGTTTCAAAACCCCTGGATTTCAATCCAAACCCTTGGATTGCAAACGAAAAACCAAACAAGGCCTAAGAGTTCAACAATTTCCTCCATTGTAGAATAATTTAGCACAATTTATTCAATATCTATGCTTGTAACGCGCACTGCGCTTCTCATGCTGACTAGTGGATGCATGTGACTCCTAATAGTTTTTATTCGCAATTTACGCATTATAACTCAATTATTTCCCTTGAACCTTATAAAATTGCAGAATAGAGTAGCCTAAAATATGTCTATTTGAGAGCTATCCAACCCCCAAACTTAATCATTGCTTGTCCCAAGTGATGCATAGTTTATCATCAACATTTCCGTTCAACTAAATCAGCTTTTTCTCCTCTTGAGCTTAAATCTAGCAGATTTCATCACATTGTGTAATCTTAGCACGAAATTTCTTTCTCTTTTCAGTTTTTAAACTTTCCCAAATATTCAGGTTTTCCTTTAAAATCCTCCCTACCATGGCTGGCAAATTGTTCCTCATTGCAATTATTTCTCATTACTCAATCTATTATACTTAATCACTTCCACAACTAAGGTTGCCCAACATATTCTGTCAAAATCGTTATCTAGGCCCTTATATCCCTCGAGGATCTTTGCTATGCTTTTCGCTTTCCTTTTGGATTGCACTCATATCTACAATTCCGTAGTTCTCATGATGAATTGTTTGAGCATAAAACAATTCACCTAAGCAAAGGAATCTTCAAGCTTGCACTTTTCGTAGACAACAGAATACTTAAGGATTCCTAAGGCTTATTTGCTCTTCTTTGCCTTCTATTTTTCCCAGAATATGTTGATCTTTATTTTATAATTTTTTTTTTTCAGTAAATCACTCCTCGAGCATCCTTCACCCTTGAACTTAAAATCTTCACTGTCCCTAATGAAGGTAAGGTTTAGTTCCTCCAAACTTAGCTATTTCTGTGATTGCGATACTTATCTCAAGCTTTAAGACTTCCTTACAAATTTTGATTCTTTCTGTCATTCATGATAGTGACTATTCTAATGCTAGGTTTGAATCTAGAGGAATTTAAGAATTCTTCTAATTGAAAGCAAATTTCCTACTAAAACTTAGATTTGCGATAATAGTGCTAGCCTAATCTTTCAAGGAAAAAAATGTTGATAATAATTTTAAGGAAAATACAACAACTTGCATCCTAATAAATGAAATGCATGTTCCTATTAAATTGAAATTGCGGACTACGAATGAAATGCATGCAGAAGGGAAAGTGCTTAAAATGAAATAAGAGAGCGGGACTTCCATCTAGTTGTTTGCATTGCCATCTAGCTTGTCTTTTCCTTGCTTCGAATTGAGTGTTTGTTTTGGAAATTCTGGCCATTCGGAATATTCCTTTAGTGTTGCGGCCGTCTTTAAAATTATTTCATCTTTCTTATTTGCATAAGCCTAGAAGTCTTGCGAGTGGGTGAACAGTGATTCAAATTGCTTAATCGAATTGTTGGCGACTATAAATGTTTCAAATTGCTTCCCTTTTTCTTGCCACTTCAAATTCTCGGCTTCCATCAGATGTTTAGTGTATATTTTCAAGATTTTGTCAATCGGCTGTGGTTGAACGCCGTTCTCCAAACATAACCTTGTGATAGTATGCGGATATAACATCTTCCTATGCTTAGCCAAAGCACATCACATGATTTTCCCTTCTACTACTCTACCTAGATTGACGTATTTTTCGATTTTAATCGCATAGAGCAGTAGTGCTTGCTCCTTGCTGATTATAATTGCATTAGTTGATGGAATGATCGCATTTTTTCTGAAGTTTATCCACTTCTGCAATTTCAGTTTAACACACTCTATTGGAAATGACCATTGATTCTTCCACTTCGCCCTTTCCATTCCAATTGTCTTTGCACACTCCTGCAATTGCTTCTTAGTTGCCTTTAATAGCCTTCGACATATCCCAATGTTGTTAAGAAGGCTAAAAGTTTTGTTCAATGTTGAGGATCTGTTGTTTATGATTTGACCTTCAACACGTAAGAAAAATTTCTTTTCTTTGTTCATATTTGCATAGAAATGGTGAATCCAGTCTGGTCTTGCGTCCATGGTGGGTTGTGCTAGTTTCTCCCAGCCCAATTCACATATCTCGTGAAATGTTGCTTCTGGTATGCACACCTCATGCCAACCTCGGTCTTGCCAGAATCTTTTCCATGCTAGCGATGCATAGAGATCTATTACCAAAACAACTGGATGTCTTGCTTCCCTGTTTTCTACTGCCTTGCCTTTGTTGGATGTTTAGCTACTCGAGGCCATTAGTTACAAGAGAGGAAACTGGAAACAGAATCTTTGGTTCCTTATAGGTGTAGACTAGAATGTGGCGATCGTTCTTTTCTTTCACAGGGTTTATATAAAGTTTCTAAAGATTTTGAAAATTCTTGTGCAAGGAAGGAGATCATCTCGAAAGGAAAAGTTTAATTTGATTTCAAGGATCTTTTATTTTGCACCAATTCTTTCCAAAATTACATAAATAATTGAAAAGGGAAAACTGCATAAATGGAAAAACTTCTTATTCTAAAAAATATTGTAAAATTTTGCACAAAGTCAGAAATACCGAATTTTTGCATTCTAAGAATGCTGCTGAGTAGGACCTAGGTAGAACCCTTGTGCTAATTCCGTCCAGTGCGAGTTGTCCTTGCTTGGACCATTTATATATTTTGGAGCGACGCCATCTTTGATAGCCTTCTCCTGCCTTACTCCATCATGCGCCTTAATGTGTGTATTTCCTATCACTTTCAGTATTGATAGGGTGTGGAGCATCAGATTGAAGCTCAAGTGAATTGTCTTCCTCGAATGATCAATTCTTGTTGTCTATGCGGTTCTGATAGCTTAAAAGCTATGGGCACCATTACTAGTGGTCCATGGTTTCGTGGGCTATCGTTGTTTTCCTACTACGGAAGTGTCGACTCTTCTTCTTCCCTACTGGGTTGATGAAAAATCCCGGTATTTGGTATTGCAAGGTCATTACTCACCATGCTAATTGGTTGAGGATGTTCATCCTCGCTTTGCCTTTCATCACTGGAAAATTGCTCAGTGTCAATATTGAAACCTTCTTCTTTTTCTTCCACAACGAATTCCGTAATATCAGCTTCTTGCGTGGCTATGGTGGCAAACCTTGCCCAAGCTTCTGATACGACCCCAAGACCGTTGAAGGTCTATTCAAGACGGAGCAAGAAGTGACGGGCTTAATTATTATTCTTTAATTTATTTATGTTAGGGTTATTTAAGTTGTATTGGGCTTTTGGGTATTGATACAATCCGGGCCATGGATTATTATTAGGCCTTATTATTAATTAGGGTTTCTTGTAGGATTAGGAAATAGGATTAGGATTAGGATTAGGATTATGAAGATGTTCTAATTCTATAAATAGGAGGAGTTAGTTCATTATTATTCATTCAGTTATCATCTTTGTACTCTGGCTCTTTGAGAGATCCTCTCGAGAGAATTATCGTAGTTTAATAAAAGTGTGGTAGATTCTATCATTTTGGTATCAGAGTCGTTCACCGATCCGGGAATGGTTGCTACTAGGATGGAATCAAGAATGGAAGAATTGGAAAACACCAATGCCCAAATCTTGAAGAAACAGCAAGATTTCGAAACTCAATTGCTGACGATGGGAAATAGGCTCGATCAAGAATTAGGTCAGATGAATTTGAGCATTATGAACATTCAGAAATTATTAGAGCGAAATTCGGGACAACAGAGCTCCGGGACCGATAACTTAGACAAGGGGAAAGGCATTGTTCAAGGACCCGAAGAAGCAATGGATGTATCAGCAGCGGCGGGGTTGGGCATGGTCAGTGCCCCGGGTGCAGCGGCAGGCTCCGGGACGGACTCGGGCGGCGCGGGCGTTCATGGAGGAGTGGTGCCGTCGGGCTGGCGTGAGGGGGCGACGGGTTACGGCGAGTTCTGGGGCGTCGGAGGGCGCGGCTGCAGAAGTGGACAGGACCGGGGTGCGGACGAACGCGCGTGGGGCGCGACGGTGCGCATGATGGTGGGCACGGTGGTGTTCGCGGGCGAGCGAGGCGGGGGGTCAGGTGGGGCCGAGCGCGAGTGGGGGTCGTTTTCGTGTGTGGGCAGACCTGGCCGGGGCGGGTCAGTCGGGCCGGGTCGGGGTGGACCAACTAGGGGGGACCGGAGAGATAGGTATTAGGGTCCACGGGACGGGGAAAATTATCAGTTTCCGGAGTTCGATCGAAGGGGAGAACCGAGAGTAGAAGAGAGGGGAAACAAGTTGCTGGAGGAAAGGAGGGTGTGCATCGGCTATGAGAGGTCGTTCGCGCATGACGGTTGGAACGATCGGGATTGGGAAAATTACAATCGAGAAGGGGATTGCGAGGACTGGAGAGAAAGGGAGGATCACTACGAGCGAAGGGGACCAAGAACAGGAGGTAGAGACAGGCTAGTGTTTGATAGGAGACTTCGGAAGCTAGAGATGCCTGTTTTCAAAGGTCTGTCAGACGAGGATTCGGACGGTTGGTTGTGCCGAGTGGAACGATATTTCTAGGTAAACCGATTGGTAAGGCAGGAACGGGTTGAGGCTGCAGCCTTGTGTATGGAAGGTGAGGCATTGGAATGGCTGCAGTACGAGGAGGATCGAGCACCGATCGCGTCCTGGGAAGATTTTCGAGAACTATTGTTGCACCATTTCCAGTCGACTAATAATGACAACAGATACGCAAATCTTATGAGTTTACAACAGGTTGGGACTGTTAAAGAATATAGGCGACAGTTCGAAAAATATGCAAAAGGAATGCGTGACATTAGTGAGAGTGCCTTAGAAGGAAAATGGGAGAGCGGCCTGAAGGAAGAGATTCGTAGCGAGATAAGGAAGCTACGTCCGGTCGGAATTCAAGATAAGAAATTCATGGCTCAGGTAATTGAAGATGACCTTGCTTTTCGGGCTCAAGGAAAACGAGCTGACTTCTCATCAGTACCAAAACCGAACACGAGTTCAGGGGCCCTAAGTGGGAGAGGGACAGGAAGTTCAAATCTGAGAACGATAGCCTACACTCCAAATAGATCAGCCATGACAAGTACAACTTCAACGACTCCTTACAAACGTTTGACGGATAGTGAAATCCGTGTGCGAAAAGATAAAGGACTGTGTTTTCGATGTGATGAACAATTTGTTCCGGGTCATAGGTGTAAAGAGAAATTAGAGATACTGGTAGTACGAGATGCAATTGACCACGGGGATAGCTATGAAAACGACAGTACACACTCAGATGAGTATCAAGATGTCGAGGAAGCTGCGCGAAACTTAACAGCACTGTCCTTAAATTCAATGGCCGGGTTGAGCTCTTCAAAAACATTAAAAGTCACAGGACAGATACAGGGGCTAGAGGTAGTCGTCCTTATTGACTGTGGTGCCACACATAATTTCATATCGGATGTGATTGTGGCTAAGTTACAGCTGCCAGTGCAACCATCGCATGATTATGGCATAATGCTAGGGACCGGCGACTCAGTGGGGACAGCTGGAATTTGCAAGAATGTAGAACTGCACTTAGCAGAACTAAGAATCGTACATGATTTTCTGCCTTTGGCCCTAGGAAGTGCTTATGTGATCTTAGGGGTAGCTTGGTTGGAAACGTTGGGACAGATTGAGTTAAATTTTCGTTCACTACAGATGAAATTTGTGTTCGGGTCTTGGCAGGCCGAGTTACAAGGGGATCCAAAGTTGGTTAAAGCACAAGTTTCTCTGAAGTCCATGATGAAATCATTACGACTCGAGGACCAAGGAATCCTAGTGGAACTGAACATGATTGATGCATTCGGGACCAACAGGGTCCAGATGAATGCTTTTCCCGACCTAACTCAGGTACCTTGTGAGTTGCACTCTTTAATTAAATCTAATTCTCCTGTGTTTGAGTCCTTGACAGAATTACTGCCCCAAAGGAATTGTGACCATTCGATTGAATTAAAGACGGGTACGGATTCAGTGAACGTTTGCCCGTACCGGTATCCTCAGTACCAAAAGAATGAGATTGAGAGGCTAGTTCAGGAAATGTTGTTGGCCGGAGTCATCCGTCCAAGCACGAGCTGTTTTTCGAGCCCCGTATTACTGGTAAAGAAGAAGGATGGTAGTTGGCGTTTTTGTGTAGATTATCGGGCTTTGAACCAAGCTACTATTCCTTATAAGTTTCCCATACCTCTGGTCGATGAGCTCCTGGATGAATTACATGGAGCATCGATTTTCTCTAAAATAGACTTAAAAGCGGGGTACCACTAGATCCGGGTTAAGCCGTCCGATGTGTACAAAACAGCTTTCAGGACTCATGAAGGTCATTATGAGTTTGTAGTCATGCCTTTTGGGTTAAGGAATGCTCCTGCGACTTTCCAATCCATGATGAATGAGATTCTGCGACCGTAGCTCCGAAAGTTTGTGCTGGTATTTTTTTATGATATCCTCATCTATAGCCTGTCCATTCAAGAACACAAAGAGCACCTGGCTCAACTCTTTAAGGTGTTACAGACCCATGCGTTTGTCGCCAATGCTAAGAAATGTCAATTTGGGTTGCACCGCATTGAATACTTGGGACATTACATATCCGCTGAAGGAGTATCAGCTGACCAACAAAGATTGAGGCAATGAATAATTGGCCAAGTCCTAAAACTATCAAGGACCTGCGGGGGTTTCTCGGCCTGACAGGATATTACCGACGTTTTGTAGCTAATTACGGGTCTATGGCTTTTCCACTAACTCAACTTTTGAAGAAAGGCAAGTTTGAATGGGGACCAAGTGCAGAAGATTGCTTCCAAAGGTTGAAACATGCTATGAGCAGTGTCCCCGTACTGTGTTTACCAGATTTCGACCAACCATTTGTGGTTGAAACAGATGCATCAGGAATTGGTGTGGGCACTGTACTCATGCAACAGGGACAACCGTTGGCATATTTCAGCAAAGCTTTACCCATAACTCACCGCTTGAAATCTGTTTATGAGCTGGAATTGATGGCAATTGTGTTCTCCATCCAACGTTGGCGAGCTTATTTATTGGGACACAAATTTATTGTTCGAACAGATCAGAAAAGCCTTAAGTTCTTACTTGAACAACGTGTAGTAGACGGTGAATATCAGCGTTGGATTGCGAAATTGATGGGCTATGATTTCAGTATAGAATACAAGAAAGGTCACGAGAATCGAGCGGCTGACGCTCTGTCTCGAAACCCTCAGAATTGTGAATTCAGCATGTTAAGTTATGTGGCAGGCATTAACACAACAGTTTTTATTCAGCAGGTTCAAGACGATGAGAAATTATCGGAAATCCATGCAGCATTGAAAGCTGGAAAAGGGGACCACCGGGATATTCGGTAGTGGGTGATATTTTGCTCTACCAGAACAGGCTTGTGTTACCTCCGACATCCCCGACGATTCCACTGTTGTTACTGGAATTCCATGGGGGTGCTATTGGGGGGCATTTTGGAGTCCTTAAGGCTTATCAACGGCTTGCTAAGGAAGTGTACTGGACAGGAATGAAGGCTCGAGTACGAGCATTTGTGGCCGAATGTTCAATTTGTGTCCAAGCTAAGCACCTATCATTATCTCCAGCTGGGCTATTACAACCATTACCAATCCCTGAACGGGTTTGGGAGGACATTTCGATGGATTTTGTGGAAGGTCTTCCACGTTCTGAGGGATATGATACCATATTAGTAGTGGTGAACCGTCTTTCAAAATATGCGCATGTCATTCCTCTTAAGCACCCCTTCACATCATTATCAGTAGCGAAGGTCTTCATAAAGGAGGTGGTCTGCCTACATGGGATTCCCAAGAGTATTGTGTCAGACCGAGACAAAGTTTTTACTAGCCTCTTATGGGAAGAGATATTTAAGGCCTCTGGGACTAAGCTTTGTCGTAGCACGACTTATCATCTACAGCGGATGGCCAAACTGAGGTTGTAAATCGCTGTTTGGAATCATACCTACGATGTTTTGTGATGAATCAGCCTAAGGCGTGGTCTCAGTGGTTGCCATGGGTCGAATTCAGTTTTAACACCTCATTTCACTCATCTACGAGCATGACTCCTTTCGAGATTGTTTATGCCAGAGCTCCACCACCGATTTTGGGGTATGATTACGGGGCTAGTCCTGTAGCTGCTGTAGATACATTGATGTTAGATCGGGATAGAGTTTTGATGGGCCTGAAGGCTAATTTGTTGCATACGCAACAGTCAATGACCGACCGTGCAAACGCAAACGGTCGAGATGTTCAATTTTCTATGGACGACTTGGTATATATCAAGCTCTGACCTTACCGACAGTCGTCAATGGCAAAGTTTAAACACCCAAAATTAGCTCCCAGATTTATTGGGCCGTATCGGGTCCTAGCCCGGGTGGGGCCAGTGGCGTATCGACTAGAGCTCCCCCCAACTGTGAAGATTCATCCGGTTTTTCATGTGTCTGTTCTGCGCAAAGCAGTGGGATCCTCGGTGCTCATCATGTCTACACCACCCACAATTGGAAATGATTTAAGTGTGGCAGTGTGTCCTAAGACCGTCTTAGGAGTACGTGCGAACGTGCAGGATGGAGGATCGCAACAGGTTTTGATTCAGTGGGAAGGATCTTCACCAGATGATGCTACATGGGAGTCCGCAGCTGACCTGGAACTGCAATTTCCGGACTTTCACTTTGAGGACAAGGTGGCTCTTTGGGGGGGAAGTATTGATACGACCCCGAGACCGTTGAGGGTCTATTCAAGACGGAGCAAGAAGTGACGGGCTTAATTATTATTCTTTAATTTATTTATGTTAAGGTTATTTAAGTTGTATTGGGCTTTTGGGTATTGATACAATCCGGGCCATGGATTATTATTAGGCCTTATTATTAATTAGGGTTTCTTGTAGGATTAGGAAATAGGATTAGGATTAGGATTAGGATTAGGAAGATGTTCTAATTCTATAAATAGGAGGAGTTAGTTCATTATTATTCATTCAGTTATCATCTTTGTACTCTGGCTCTTTGAGAGATCTTCTCGAGAGAATTATCGTAGTTTAATAAAAGTGTGGTAGATTCTATCAGCTTCTCCTATTGTTGATATTGCATCTTTTGTTCTCTGTCTTTTGTTGTGCCCTTCAAAGCCTTGACCTCTTTTTCTCGTTTAATCATCTAGCCGAAAATCTTCTCAGGAGAGTCCAGTCTCATTGAAAAACTCCACTATTGATGCCCACTAAGTACTGCGGCCCTTAAATATGTATCTTCTGATTTTACCTGTGCAATTGTCTATGTTGTCCGTTGATGTGTTTTGATATGTTGCTTGGAATAGTATCACATACTACAAGTTTATTCATCAAAGTTGTCTCTTGAACATTTTCAAACAAAATTTCTATGAATTTGAAATTCTGATAATCATTAAAGCCCCAAATTATAAATGCTTTGAAACCCACTTTTAAAAATTGAGTATTTAAATTTTTATTGCCTAAAAGGCTTTCAGGTAAAATATAATACCCCTAGCTACTACTCCCTTATAAGAGAAAGGAAAATATGCACCCCGAAAATTGAACCAAAAACCCCAAACGTGTTCACTAATACTCAAGAAAACCTTAAATTTTGAAATTAACATAAATATATTTTAATTACATAAATGTGTTCATTTTAATCAAACCTTCAAAGTTTCCTTTGAACGTTTCCTAACCAGTTTCCAAAAATTAGATAATTTTAAAATTCCAAATTTCATTTTTATGTTTCGAAATGAATTTTGTATTCCTAATATTTACCCTACCATTCCCTTACAAGATAAAAGAAAATATGCACCAAAACACTGAACTCAAAACACCAAAATGAGTTGGTAAATACGCATGAAAACTTTTATTTTTGAAATAACAAAAAAATTCTTCTTATTACATATATGTATTTATTATAATAAAAAATTAAAAATTTGTCACTTGAAAATTTCCCACAAGTGTCCATGGATTTTAAATTTAATTTCAAAAAAATTTAAAACCCCAACTTTTAAATATTTGCTTTGAAACTCACTTTTTGATTTTTGGTGCCTAATATTTTGGGCTGACTACTGGCTAGAAAAGGGGCTGTTTGTTTGACGTTTTTAGCTAAGAGTTAAATTTAGGAATTATTAACTCCTCGAAAACCTACATCCAAACGAGTTTTTACCAATTCCTCCTCAATTTTACTTTTGAAAATAACTCTTATTTCTAACCATTCATTTTTAATCATTCATTTATAACTACTCAATCATTTATAACCACTCATTTTTAATCATTACTTTCAAATCAATCAAAATAACTTATGTTTAACCACTCATTTTTAATCATTTCTTTTTTAACTACTAAAAATAACTACTCATTTTTAAATCTACATTCAAACAAGGTTTTGACTATAACTCCTCTACATAAAAACTACATCCAAACAAGTTTTTGGCACAACTCTCAATTTTTAACTACTCAATATAACTTCTTAACCTAAAGACTACCTAAATATGTCAAACAAACACCCCAAGTGACATACCAAATGAAAACATTGAAAAAAATAAAAATAAAGACCTCGATCATCTGTCCTAATTCTCTGTTACCCCCTCTCGTTCTGAAAACCCTAATATGAATCAAAGCCAAAGGCCACACGCTTTTACAATCTCCCTGACAGATTTCCAGCCGTTGATCTCTGTTGACACTACTTCTTGGTACTCAATTTATCTCCTTCAATTTCTCCTTATTTTGCTTTCTGTGTTTGTGGGTTGCTCTTCATTAGAATCGTGGATGTGTCAGTGTCTTGATTTTCTATTTAGTTTTGATGCTCTGTTTTAGTAGGGGAACAATATTACAGGGACATCAGTAACAAAGGTATTGCTTAAGTTTTGAATAAGTGTTCTTTTGTACTTTTGATTAAGTTTCTCTACCATTGATTGTCTCATGCATTTTGTTTTCTTTGAGATTTTACCATTCTTGCAATTGTTCACTTCTAAATATAGTTCCTGCATGAAAACTTAGATTTGGTAATTCATTCAATGTAATGTTGTTTCGATCTAAACCAAAAGAACTTCATAAAACGACAATTATAGGGGCAGGGGATTTCAACTTATAACTTTTTTATTACTAAGTCATACATGATGTACCCACTTCCTTATAAGAGAAACAAAAATATGCACCCTGAACATCGAACTCGGATCACCAACATTAAATTGACTGATACCCACGAAAATCCTAATTTTTGAAAAAACCAAAAATGTTTTTTTATTACATAAATCTATCTAGCTGCTTAAAAATTGGACATACAGATTTTTTATTACATAAATCTATCTCCCCAGCAGCCAAGGAGAGTCATCAACCCCATAGAGTCATCAATGCTTGTTATTATTGCACATAACATGTTTGAATCCATTACCAGGTTTTGGTTAATCAATTAGAGCTTATTATTTGCAGGATTTGGCGTTTTCCATATTTTTGTGCAGAAAAATGCGGCCAGATCTGATCAAGAATGCAATTCTGGAAAACCCTAAGAAGATTGCAAACCTAATTGATCTTGTAAACCTTTCTTCGACTCTTAGCGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTCGGCTGTTTCAAATCTGTGTGGTCATATATCAAAACCAACAATCTTCAGGTTCTCTCTCTTTTTATGGCCTTTCTCATTAACCAACAATCTGTGTGGTCACACATATATATGCATATTATTCATTATACTACTGTCCTATTTTGTCATACATAAATTCTACATTTTATTCATCACTTGACCTATTCATCACTTGACCTAACTAACTTGCTCTAAATTTTGTCCTTTTCTGATTATAGTCTTTCTTTTTTTTTTGAGAAACTTTCTGATTATAGTCTTACTTCCCTTATTATTGTAAATTTGGGCTCTCTATTTTGTTTGTAATCATGTGGAACCCTTTGCTCTCTTTTCTACATGAAATGAAACTTACCTGATTCTCCTTTAGCACAAGGATATAGTATTATAAACTGGGAAGGAGTAGGATGGATCATTTTGTCATAAGATATGATTTTTGTTTGTTACAAATATGCTTCCGTTGACCCATAAGTTGCTCTCTTTATAGTATACTGATAAAAGGTTTTGGATATGTACTTTTCTTGGCTAGGATCCGACCAACAAAAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCGAGGGTTGAGCTAGTCGAACTTCCTGCACTGATTCAGTTGCATTTTCCCAAAAAGCCCAAGTGAGTTGTGTTTGCAGTTTAACCTCTGGCACCTCTCGAATGACGTCCTCAAGTCGCCTTTGTTTCGAATGTTTAGCCTCAATATCGTATAATTTTCCTACAGGGTTCTTTTATAGAACATTATTCAGCAATAGTATGAGTTTAACTATCTTCCTCATGCCTTCTGTGTAGTATTGTATTTGGTTTCACTTGATATTTTATCGTATTAATTTCTCGAGTAACTTGGAATTGATTAGAACTTCAGGACAAAGTAGCTGCCTATCTAAGAATTAATTTATTATATTTTTTTTTTACAACCAAATGTAGTATAATCGGTTAGTTGTCTCGTG

mRNA sequence

GAATTATTTTACCCCCTCAACAAACGAACACCTCCTTTTCCGCCGTGCTGCGCCACCGAAACCCTCACCGACGTCGTCTACTTCCACGCGCACGAGCTCCAGCAGTCGTCACCTTTCGCCCCGCTGAGCCGCAACACCTCCGCTCGTCAACGACACCAGTGCCACACCGTCCAAGTTCGCAAGTCGCGAGTTCGCTGCCCAGCCTCCGTTCGACAGCGCCTCAGCAACGGCGCACTAGTCGCGCATTCCAGCGGCCCCAACACGCGCGTGGCTCGCCCCTGCTGTGCCGGCCTTGTGCAGCTGGTTCCTTGCGCCTCGTTAGTTCTTGTCAGCCCTATTTCATTGTGTTTCGGGGTTGGGTGTTTATCGCTGATTTCTGCCGTAGTTCAAAGGTTGCTCTCAGTATCATCTTTCCGGGATTTGGCGTTTTCCATATTTTTGTGCAGAAAAATGCGGCCAGATCTGATCAAGAATGCAATTCTGGAAAACCCTAAGAAGATTGCAAACCTAATTGATCTTGTAAACCTTTCTTCGACTCTTAGCGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTCGGCTGTTTCAAATCTGTGTGGTCATATATCAAAACCAACAATCTTCAGGATCCGACCAACAAAAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCGAGGGTTGAGCTAGTCGAACTTCCTGCACTGATTCAGTTGCATTTTCCCAAAAAGCCCAAGTGAGTTGTGTTTGCAGTTTAACCTCTGGCACCTCTCGAATGACGTCCTCAAGTCGCCTTTGTTTCGAATGTTTAGCCTCAATATCGTATAATTTTCCTACAGGGTTCTTTTATAGAACATTATTCAGCAATAGTATGAGTTTAACTATCTTCCTCATGCCTTCTGTGTAGTATTGTATTTGGTTTCACTTGATATTTTATCGTATTAATTTCTCGAGTAACTTGGAATTGATTAGAACTTCAGGACAAAGTAGCTGCCTATCTAAGAATTAATTTATTATATTTTTTTTTTACAACCAAATGTAGTATAATCGGTTAGTTGTCTCGTG

Coding sequence (CDS)

ATGCGGCCAGATCTGATCAAGAATGCAATTCTGGAAAACCCTAAGAAGATTGCAAACCTAATTGATCTTGTAAACCTTTCTTCGACTCTTAGCGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTCGGCTGTTTCAAATCTGTGTGGTCATATATCAAAACCAACAATCTTCAGGATCCGACCAACAAAAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCGAGGGTTGAGCTAGTCGAACTTCCTGCACTGATTCAGTTGCATTTTCCCAAAAAGCCCAAGTGA

Protein sequence

MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK

Homology

[Close]

BLAST of Sed0005824 vs. NCBI nr
Match: XP_038882021.1 (upstream activation factor subunit spp27 [Benincasa hispida])

HSP 1 Score: 171.0 bits (432), Expect = 5.1e-39
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDP 60
           M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK 101
           TNKNVVICDEKLKSILLGKP+VEL ELPALI+LHFPK PK
Sbjct: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of Sed0005824 vs. NCBI nr
Match: XP_022928748.1 (upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 upstream activation factor subunit UAF30 [Cucurbita moschata])

HSP 1 Score: 168.3 bits (425), Expect = 3.3e-38
Identity = 83/100 (83.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDP 60
           M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK 101
           TNKNVVICDEKLKSILLGK ++EL ELPALI+LHFPK PK
Sbjct: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]

BLAST of Sed0005824 vs. NCBI nr
Match: KAG6603170.1 (hypothetical protein SDJN03_03779, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.3 bits (425), Expect = 3.3e-38
Identity = 83/100 (83.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDP 60
           M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 31  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 90

Query: 61  TNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK 101
           TNKNVVICDEKLKSILLGK ++EL ELPALI+LHFPK PK
Sbjct: 91  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 130

[Close]

BLAST of Sed0005824 vs. NCBI nr
Match: TKY46953.1 (Upstream activation factor subunit spp27 [Spatholobus suberectus])

HSP 1 Score: 167.5 bits (423), Expect = 5.7e-38
Identity = 83/100 (83.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDP 60
           M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 179 MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 238

Query: 61  TNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK 101
            NKNVV CDEKLKSILLGKP+VEL ELPALI+LHFPK+PK
Sbjct: 239 NNKNVVNCDEKLKSILLGKPQVELAELPALIKLHFPKEPK 278

[Close]

BLAST of Sed0005824 vs. NCBI nr
Match: XP_027343910.1 (upstream activation factor subunit spp27 [Abrus precatorius])

HSP 1 Score: 167.5 bits (423), Expect = 5.7e-38
Identity = 83/100 (83.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDP 60
           M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK 101
            NKNVV CDEKLKSILLGKP+VEL ELPALI+LHFPK+PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKLHFPKEPK 100

[Close]

BLAST of Sed0005824 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-08
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 24  VNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSI 76
           + LS  L+EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KLKS+
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172

[Close]

BLAST of Sed0005824 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.4e-08
Identity = 29/77 (37.66%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 24  VNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVE 83
           V LS +L+  +G+ +++R    + +W+YIK +NLQ+P NK  ++CDEKL+ ++LGK    
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGK-STN 183

Query: 84  LVELPALIQLHF--PKK 99
           + E+  ++  H   PKK
Sbjct: 184 MFEMHKILASHMTEPKK 198

[Close]

BLAST of Sed0005824 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-05
Identity = 21/64 (32.81%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 12  ENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEK 71
           ++P   +  +  V LS+ L +F+G  ++ R    K +W YIK ++LQ+P ++  ++CDEK
Sbjct: 112 DSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEK 171

Query: 72  LKSI 76
           ++ I
Sbjct: 172 MEPI 175

[Close]

BLAST of Sed0005824 vs. ExPASy TrEMBL
Match: A0A6J1ELR1 (upstream activation factor subunit UAF30 OS=Cucurbita moschata OX=3662 GN=LOC111435564 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.6e-38
Identity = 83/100 (83.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDP 60
           M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK 101
           TNKNVVICDEKLKSILLGK ++EL ELPALI+LHFPK PK
Sbjct: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]

BLAST of Sed0005824 vs. ExPASy TrEMBL
Match: A0A6J1HY33 (upstream activation factor subunit UAF30 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.8e-38
Identity = 83/100 (83.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDP 60
           M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK 101
           TNKNVVICDEKL+SILLGK +VEL ELPALI+LHFPK PK
Sbjct: 61  TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of Sed0005824 vs. ExPASy TrEMBL
Match: A0A6J1HWJ0 (protein TRI1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.8e-38
Identity = 83/100 (83.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDP 60
           M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115

Query: 61  TNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK 101
           TNKNVVICDEKL+SILLGK +VEL ELPALI+LHFPK PK
Sbjct: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 155

[Close]

BLAST of Sed0005824 vs. ExPASy TrEMBL
Match: A0A1S3BL41 (upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.7e-38
Identity = 81/95 (85.26%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 6   IKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNV 65
           +K A+ +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNV
Sbjct: 6   MKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNV 65

Query: 66  VICDEKLKSILLGKPRVELVELPALIQLHFPKKPK 101
           V+CDEKLKSILLGKP+VEL ELPALI+LHFPK PK
Sbjct: 66  VVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of Sed0005824 vs. ExPASy TrEMBL
Match: A0A151SBL4 (Upstream activation factor subunit UAF30 OS=Cajanus cajan OX=3821 GN=KK1_025905 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 80/100 (80.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDP 60
           M P  +K AI +NPKK+ANLIDL+NL STL EFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK 101
            NKNVV CDEKLKSILLGKP+V+L ELPALI++HFPK+PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]

BLAST of Sed0005824 vs. TAIR 10
Match: AT4G26810.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-39
Identity = 79/100 (79.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDP 60
           M P  +K AI +NPKK+ NLIDLVNL STL  FVGQSQISRLGCF  VWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK 101
            NKNVVICDEKLKSILLGK RVELV+LP+LI+LHFPK+ K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]

BLAST of Sed0005824 vs. TAIR 10
Match: AT4G26810.2 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-39
Identity = 79/100 (79.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDP 60
           M P  +K AI +NPKK+ NLIDLVNL STL  FVGQSQISRLGCF  VWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK 101
            NKNVVICDEKLKSILLGK RVELV+LP+LI+LHFPK+ K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]

BLAST of Sed0005824 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 8.5e-16
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 20  LIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGK 79
           ++ +V +S  L+ F+G++++SR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK
Sbjct: 30  ILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGK 89

Query: 80  PRVELVELPALIQLHFPK 98
             V  +E+  L+  HFPK
Sbjct: 90  DTVGFLEISKLLSQHFPK 107

[Close]

BLAST of Sed0005824 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-13
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 26  LSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELV 85
           +S  L+ F G+ +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK +V + 
Sbjct: 39  VSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGIT 98

Query: 86  ELPALIQLHFPK 98
           E+  L+  HFPK
Sbjct: 99  EIMKLLSPHFPK 110

[Close]

BLAST of Sed0005824 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 26  LSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELV 85
           +S  + + VG  +I R    K +W+YIK ++LQDP NK  ++CDEKLK I  GK RV  +
Sbjct: 74  VSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFL 133

Query: 86  ELPALIQLHF 96
           E+  LI  HF
Sbjct: 134 EIAKLIGPHF 143

The following BLAST results are available for this feature:

BLAST of Sed0005824 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882021.1	5.1e-39	85.00	upstream activation factor subunit spp27 [Benincasa hispida]	[more]
XP_022928748.1	3.3e-38	83.00	upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 up...	[more]
KAG6603170.1	3.3e-38	83.00	hypothetical protein SDJN03_03779, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TKY46953.1	5.7e-38	83.00	Upstream activation factor subunit spp27 [Spatholobus suberectus]	[more]
XP_027343910.1	5.7e-38	83.00	upstream activation factor subunit spp27 [Abrus precatorius]	[more]

BLAST of Sed0005824 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	2.2e-08	48.08	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q08747	6.4e-08	37.66	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q05024	1.3e-05	32.81	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]

BLAST of Sed0005824 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ELR1	1.6e-38	83.00	upstream activation factor subunit UAF30 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1HY33	2.8e-38	83.00	upstream activation factor subunit UAF30 isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1HWJ0	2.8e-38	83.00	protein TRI1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1	[more]
A0A1S3BL41	4.7e-38	85.26	upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221...	[more]
A0A151SBL4	1.4e-37	80.00	Upstream activation factor subunit UAF30 OS=Cajanus cajan OX=3821 GN=KK1_025905 ...	[more]

BLAST of Sed0005824 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26810.1	1.9e-39	79.00	SWIB/MDM2 domain superfamily protein	[more]
AT4G26810.2	1.9e-39	79.00	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	8.5e-16	43.59	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	3.0e-13	43.06	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	3.3e-12	45.71	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 20..100 e-value: 2.9E-14 score: 63.4
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 24..95 e-value: 5.7E-24 score: 83.8
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 19..97 score: 19.016199
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 17..100 e-value: 2.2E-22 score: 80.7
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 16..98
None	No IPR available	PANTHER	PTHR13844:SF45	OS09G0133000 PROTEIN	coord: 5..99
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 5..99
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 24..95 e-value: 2.08428E-24 score: 85.6729

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005824.1	Sed0005824.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus