Sed0005685 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAATTCAGTTATTTTTCGAATTTCTCATTAACAATGGAAATGGATGCGATCAGGCCAGCAATGAAGAAGAAGCTACGGAACATGCTGAGAGAAATAGCGTTCGCAATGAAGAAAAGCCTAATCGAAACCAAAATCATTCCATTATTTGATCTTCACTCGATGCTGAAACGAACCAAAATGGCAGGCAAGGCCATTGCAAATCTGGTGGAGTTCCATCACGGATCCGCCTTCAGTTGCCAAACAATCGACATCGCCAATTCCTACATCTCGACTCGCGATTACGAGTTCAGCTGTTGCAGTAACAGCCCTCCGTTCCGTTTCTACTTCGGCAAACTCCAAAACCGCCGTTATTTCCCCAAATCTTACCGCTCCGACGGTTTCTCCACCGCCGCCGCAGCCGTACTTGATTTTGTTCACGTGGATCAGAAATCTGAGGCGTCGCCGTTCGTGCCGTTGCCTGGATTTGGAAAGAGTCCGTTGGTTGTGCGGCAGTTGCGCGTCACGGATTCGCCGTTTTCGTTGAAGGACGACGGCGATAGTCAGATCGTCGATAGAGCGGCCGAGGAATTCATTGTGAAATTTTATAAGGATTTGCGGCTGGAGCGAAGCTTGGCGGCGTTTGAATCGCCGTATCGGAATACGCTGTGCCGATGAAAACGAGCTTGGAGTTTTTTCTGATCGACGATTTGTTTACCGTTATGGATCGTCATAAATTAACGTGAAATCGACGTGTTTTAATGGCCTCGAGAGACGTGATTGATTCTCAGCTTTCTCGATTTGAATCGACGTGTTTGGATCATTACTTCCCTTTTTCCCTCTTTCTTTTTTCTTAAATAATTTTCGTAAATTTTAGTTTCGGGTTTTGTTTTAAGTTTTGGGGTTTTCTTTTTCTTTTTTAGTCACAGAAGGTGGGTTCTGTTGTTATAATCAGAAGTGATCATTTTGTTTT AAAAATTCAGTTATTTTTCGAATTTCTCATTAACAATGGAAATGGATGCGATCAGGCCAGCAATGAAGAAGAAGCTACGGAACATGCTGAGAGAAATAGCGTTCGCAATGAAGAAAAGCCTAATCGAAACCAAAATCATTCCATTATTTGATCTTCACTCGATGCTGAAACGAACCAAAATGGCAGGCAAGGCCATTGCAAATCTGGTGGAGTTCCATCACGGATCCGCCTTCAGTTGCCAAACAATCGACATCGCCAATTCCTACATCTCGACTCGCGATTACGAGTTCAGCTGTTGCAGTAACAGCCCTCCGTTCCGTTTCTACTTCGGCAAACTCCAAAACCGCCGTTATTTCCCCAAATCTTACCGCTCCGACGGTTTCTCCACCGCCGCCGCAGCCGTACTTGATTTTGTTCACGTGGATCAGAAATCTGAGGCGTCGCCGTTCGTGCCGTTGCCTGGATTTGGAAAGAGTCCGTTGGTTGTGCGGCAGTTGCGCGTCACGGATTCGCCGTTTTCGTTGAAGGACGACGGCGATAGTCAGATCGTCGATAGAGCGGCCGAGGAATTCATTGTGAAATTTTATAAGGATTTGCGGCTGGAGCGAAGCTTGGCGGCGTTTGAATCGCCGTATCGGAATACGCTGTGCCGATGAAAACGAGCTTGGAGTTTTTTCTGATCGACGATTTGTTTACCGTTATGGATCGTCATAAATTAACGTGAAATCGACGTGTTTTAATGGCCTCGAGAGACGTGATTGATTCTCAGCTTTCTCGATTTGAATCGACGTGTTTGGATCATTACTTCCCTTTTTCCCTCTTTCTTTTTTCTTAAATAATTTTCGTAAATTTTAGTTTCGGGTTTTGTTTTAAGTTTTGGGGTTTTCTTTTTCTTTTTTAGTCACAGAAGGTGGGTTCTGTTGTTATAATCAGAAGTGATCATTTTGTTTT ATGGAAATGGATGCGATCAGGCCAGCAATGAAGAAGAAGCTACGGAACATGCTGAGAGAAATAGCGTTCGCAATGAAGAAAAGCCTAATCGAAACCAAAATCATTCCATTATTTGATCTTCACTCGATGCTGAAACGAACCAAAATGGCAGGCAAGGCCATTGCAAATCTGGTGGAGTTCCATCACGGATCCGCCTTCAGTTGCCAAACAATCGACATCGCCAATTCCTACATCTCGACTCGCGATTACGAGTTCAGCTGTTGCAGTAACAGCCCTCCGTTCCGTTTCTACTTCGGCAAACTCCAAAACCGCCGTTATTTCCCCAAATCTTACCGCTCCGACGGTTTCTCCACCGCCGCCGCAGCCGTACTTGATTTTGTTCACGTGGATCAGAAATCTGAGGCGTCGCCGTTCGTGCCGTTGCCTGGATTTGGAAAGAGTCCGTTGGTTGTGCGGCAGTTGCGCGTCACGGATTCGCCGTTTTCGTTGAAGGACGACGGCGATAGTCAGATCGTCGATAGAGCGGCCGAGGAATTCATTGTGAAATTTTATAAGGATTTGCGGCTGGAGCGAAGCTTGGCGGCGTTTGAATCGCCGTATCGGAATACGCTGTGCCGATGA MEMDAIRPAMKKKLRNMLREIAFAMKKSLIETKIIPLFDLHSMLKRTKMAGKAIANLVEFHHGSAFSCQTIDIANSYISTRDYEFSCCSNSPPFRFYFGKLQNRRYFPKSYRSDGFSTAAAAVLDFVHVDQKSEASPFVPLPGFGKSPLVVRQLRVTDSPFSLKDDGDSQIVDRAAEEFIVKFYKDLRLERSLAAFESPYRNTLCR Homology
BLAST of Sed0005685 vs. NCBI nr
Match: XP_008458717.1 (PREDICTED: uncharacterized protein LOC103498040 [Cucumis melo] >KAA0061533.1 uncharacterized protein E6C27_scaffold41G00940 [Cucumis melo var. makuwa] >TYK10740.1 uncharacterized protein E5676_scaffold332G00510 [Cucumis melo var. makuwa]) HSP 1 Score: 309.7 bits (792), Expect = 1.9e-80 Identity = 163/213 (76.53%), Postives = 180/213 (84.51%), Query Frame = 0
BLAST of Sed0005685 vs. NCBI nr
Match: XP_004150847.2 (uncharacterized protein LOC101210555 [Cucumis sativus] >KGN60589.1 hypothetical protein Csa_019428 [Cucumis sativus]) HSP 1 Score: 308.9 bits (790), Expect = 3.3e-80 Identity = 163/213 (76.53%), Postives = 179/213 (84.04%), Query Frame = 0
BLAST of Sed0005685 vs. NCBI nr
Match: XP_038877425.1 (uncharacterized protein LOC120069707 [Benincasa hispida]) HSP 1 Score: 303.9 bits (777), Expect = 1.0e-78 Identity = 161/212 (75.94%), Postives = 177/212 (83.49%), Query Frame = 0
BLAST of Sed0005685 vs. NCBI nr
Match: XP_022998953.1 (uncharacterized protein LOC111493479 [Cucurbita maxima]) HSP 1 Score: 302.0 bits (772), Expect = 4.0e-78 Identity = 160/212 (75.47%), Postives = 180/212 (84.91%), Query Frame = 0
BLAST of Sed0005685 vs. NCBI nr
Match: XP_023545626.1 (uncharacterized protein LOC111805003 [Cucurbita pepo subsp. pepo] >KAG6599473.1 hypothetical protein SDJN03_09251, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030450.1 hypothetical protein SDJN02_08797, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 302.0 bits (772), Expect = 4.0e-78 Identity = 160/212 (75.47%), Postives = 180/212 (84.91%), Query Frame = 0
BLAST of Sed0005685 vs. ExPASy TrEMBL
Match: A0A5A7V077 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00510 PE=4 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 9.2e-81 Identity = 163/213 (76.53%), Postives = 180/213 (84.51%), Query Frame = 0
BLAST of Sed0005685 vs. ExPASy TrEMBL
Match: A0A1S3C8H8 (uncharacterized protein LOC103498040 OS=Cucumis melo OX=3656 GN=LOC103498040 PE=4 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 9.2e-81 Identity = 163/213 (76.53%), Postives = 180/213 (84.51%), Query Frame = 0
BLAST of Sed0005685 vs. ExPASy TrEMBL
Match: A0A0A0LHW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000960 PE=4 SV=1) HSP 1 Score: 308.9 bits (790), Expect = 1.6e-80 Identity = 163/213 (76.53%), Postives = 179/213 (84.04%), Query Frame = 0
BLAST of Sed0005685 vs. ExPASy TrEMBL
Match: A0A6J1KI86 (uncharacterized protein LOC111493479 OS=Cucurbita maxima OX=3661 GN=LOC111493479 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 1.9e-78 Identity = 160/212 (75.47%), Postives = 180/212 (84.91%), Query Frame = 0
BLAST of Sed0005685 vs. ExPASy TrEMBL
Match: A0A6J1DPK7 (uncharacterized protein LOC111021911 OS=Momordica charantia OX=3673 GN=LOC111021911 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 7.6e-75 Identity = 158/215 (73.49%), Postives = 174/215 (80.93%), Query Frame = 0
BLAST of Sed0005685 vs. TAIR 10
Match: AT4G29110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to chitin; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 82.8 bits (203), Expect = 3.5e-16 Identity = 72/208 (34.62%), Postives = 104/208 (50.00%), Query Frame = 0
BLAST of Sed0005685 vs. TAIR 10
Match: AT1G52140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 80.5 bits (197), Expect = 1.8e-15 Identity = 72/209 (34.45%), Postives = 110/209 (52.63%), Query Frame = 0
BLAST of Sed0005685 vs. TAIR 10
Match: AT3G16330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 75.1 bits (183), Expect = 7.4e-14 Identity = 70/219 (31.96%), Postives = 111/219 (50.68%), Query Frame = 0
BLAST of Sed0005685 vs. TAIR 10
Match: AT4G32860.1 (unknown protein; Has 46 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 53.9 bits (128), Expect = 1.8e-07 Identity = 59/207 (28.50%), Postives = 94/207 (45.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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