Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGTCCTGAGGTGCAGCGAGCTCGATGTGCAGCTCATGCGTTAGCTGGAACAGCTAAGTGGTGGTGGGATTCCACCTTGAGTGAGAGACCGGCTGGGTCTCCCCCTGCCACCTGGGAATTCTTCAAGGCTGAGTTCAAGGCAAAATTTATCAATGAAGAAGCCCAAGAAAAGATGATTGAGCTGTTTTCGAACCTTAAGCAGGGGTCTGACCCAATCGAGGTGTATGAGAGGAAGTTTTCGGAGTATGGGTACTTCGCACCGCAGTTGATTGCTACTCCTGAGCTGAAGATCAGGAAGTTTATTGCGGGTCTGAGGCAGGGAGTGTCTCAGGATGTTAGGGCACAGGCCCCAGAGACTTTTGCCAAGGCAGTGCAGTTGGCAACTATTTATGATGGAAAGTATCCTCCAGGAGCGGGTTGTTAGTCTGTGTGGTGCAGAAGGCCCCAGTGTACTCGGGTCAGAAGCGTAAGTTTGACGCAGGAGGTAATGGACATGGAGGCGGTCAGCGCCGTCAGGGTACTTATCATGGCAGAGACCAAAGACAGGATCGTAATCGTGATCGGCCTCGCCAACGAGGCGTAGGGAGGCCGCCACCGTATTGTAGACCCCCCGTGGTAAACAACATTGGGGGCCTTGTGGTGGTAACCCTAGAGCTTGCTATTCTTGTGGTAAGGAGGGGCATCGGGCCCGGCATTGCAACCTGTATATGGTGGTGGCACAGTGGCTCAGCAATGAGGAGGAAGAGTATATGCTACGACTCGCCAGGAGGCTGAGAAAGCCGGACCCGCAGTGGCAGGTACGCTCCTAGTTCTTGATCACCTCGCCTTTGTGTTGTTTGATTCGGGTTCCACCCATTCTTTTGTTTCTGCTGTTTTTGCTGAGCGTGCTTGCATGAATTTAGAGCCTCTAGGTTTTGAGTTATCTGTCGCTACTCCCTCGGGAACTAGTATCTTTGGCTAGCTGGAGAGGTAAGGGATGGTCGGATACAGGTGTCCGACCAGACTCTGCAGGTTACCCTCATAGTGTTAGCTATGAGCGGTTTTGATGTGATCCTCGGCATGGATTGGTTAGCTGATAACCACGCTATGATTGACTGTCGTTGTAAGGAGGTGGTGTTCAGGCCGCCAGGTAGGCCTAGCTTTAAATTTCGGGGCACCCAGAGTGGGGTGTGTCCGCCGGTGATTTCGGCAGTTAAAGCTCACCGTTTGTTAGCTCGAGGAGCTTGGGGTTTCTTAGCTAAGTTGACCGGCGAGAACCGTGACCGATTATCTGTCGGCAGTGCCCATAGTGCTAGAGTTTGCGGATGTTTTTCTGAAGAGTTGCACGCCTGCGCCGAGAGAGAGGTGGATTTCTCAATAGAGCTTGAGCCGAGGACTCGCCCTATCTCGAAAGCTCCTTATCGTATGGCGCCGCAGAATCGAAAGAGTTAA
mRNA sequence
ATGGCTTGTCCTGAGGTGCAGCGAGCTCGATGTGCAGCTCATGCGTTAGCTGGAACAGCTAAGTGGTGGTGGGATTCCACCTTGAGTGAGAGACCGGCTGGGTCTCCCCCTGCCACCTGGGAATTCTTCAAGGCTGAGTTCAAGGCAAAATTTATCAATGAAGAAGCCCAAGAAAAGATGATTGAGCTGTTTTCGAACCTTAAGCAGGGGTCTGACCCAATCGAGGTGTATGAGAGGAAGTTTTCGGAGTATGGGTACTTCGCACCGCAGTTGATTGCTACTCCTGAGCTGAAGATCAGGAAGTTTATTGCGGGTCTGAGGCAGGGAGTGTCTCAGGATGTTAGGGCACAGGCCCCAGAGACTTTTGCCAAGGCAGTGCAGTTGGCAACTATTTATGATGGAAAAAGGCCCCAGTGTACTCGGGTCAGAAGCGTAAGTTTGACGCAGGAGGTAATGGACATGGAGGCGGTCAGCGCCGTCAGGGAGGGGCATCGGGCCCGGCATTGCAACCTGTATATGGTGGTGGCACAGTGGCTCAGCAATGAGGAGGAAGAGTATATGCTACGACTCGCCAGGAGGCTGAGAAAGCCGGACCCGCAGTGGCAGTATCTTTGGCTAGCTGGAGAGGTAAGGGATGGTCGGATACAGGTGTCCGACCAGACTCTGCAGGTTACCCTCATAGTGTTAGCTATGAGCGGTTTTGATGTGATCCTCGGCATGGATTGGTTAGCTGATAACCACGCTATGATTGACTGTCGTTGTAAGGAGGTGGTGTTCAGGCCGCCAGGTAGGCCTAGCTTTAAATTTCGGGGCACCCAGAGTGGGGTGTGTCCGCCGGTGATTTCGGCAGTTAAAGCTCACCGTTTGTTAGCTCGAGGAGCTTGGGGTTTCTTAGCTAAGTTGACCGGCGAGAACCGTGACCGATTATCTGTCGGCAGTGCCCATAGTGCTAGAGTTTGCGGATGTTTTTCTGAAGAGTTGCACGCCTGCGCCGAGAGAGAGGTGGATTTCTCAATAGAGCTTGAGCCGAGGACTCGCCCTATCTCGAAAGCTCCTTATCGTATGGCGCCGCAGAATCGAAAGAGTTAA
Coding sequence (CDS)
ATGGCTTGTCCTGAGGTGCAGCGAGCTCGATGTGCAGCTCATGCGTTAGCTGGAACAGCTAAGTGGTGGTGGGATTCCACCTTGAGTGAGAGACCGGCTGGGTCTCCCCCTGCCACCTGGGAATTCTTCAAGGCTGAGTTCAAGGCAAAATTTATCAATGAAGAAGCCCAAGAAAAGATGATTGAGCTGTTTTCGAACCTTAAGCAGGGGTCTGACCCAATCGAGGTGTATGAGAGGAAGTTTTCGGAGTATGGGTACTTCGCACCGCAGTTGATTGCTACTCCTGAGCTGAAGATCAGGAAGTTTATTGCGGGTCTGAGGCAGGGAGTGTCTCAGGATGTTAGGGCACAGGCCCCAGAGACTTTTGCCAAGGCAGTGCAGTTGGCAACTATTTATGATGGAAAAAGGCCCCAGTGTACTCGGGTCAGAAGCGTAAGTTTGACGCAGGAGGTAATGGACATGGAGGCGGTCAGCGCCGTCAGGGAGGGGCATCGGGCCCGGCATTGCAACCTGTATATGGTGGTGGCACAGTGGCTCAGCAATGAGGAGGAAGAGTATATGCTACGACTCGCCAGGAGGCTGAGAAAGCCGGACCCGCAGTGGCAGTATCTTTGGCTAGCTGGAGAGGTAAGGGATGGTCGGATACAGGTGTCCGACCAGACTCTGCAGGTTACCCTCATAGTGTTAGCTATGAGCGGTTTTGATGTGATCCTCGGCATGGATTGGTTAGCTGATAACCACGCTATGATTGACTGTCGTTGTAAGGAGGTGGTGTTCAGGCCGCCAGGTAGGCCTAGCTTTAAATTTCGGGGCACCCAGAGTGGGGTGTGTCCGCCGGTGATTTCGGCAGTTAAAGCTCACCGTTTGTTAGCTCGAGGAGCTTGGGGTTTCTTAGCTAAGTTGACCGGCGAGAACCGTGACCGATTATCTGTCGGCAGTGCCCATAGTGCTAGAGTTTGCGGATGTTTTTCTGAAGAGTTGCACGCCTGCGCCGAGAGAGAGGTGGATTTCTCAATAGAGCTTGAGCCGAGGACTCGCCCTATCTCGAAAGCTCCTTATCGTATGGCGCCGCAGAATCGAAAGAGTTAA
Protein sequence
MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPATWEFFKAEFKAKFINEEAQEKMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQAPETFAKAVQLATIYDGKRPQCTRVRSVSLTQEVMDMEAVSAVREGHRARHCNLYMVVAQWLSNEEEEYMLRLARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLSVGSAHSARVCGCFSEELHACAEREVDFSIELEPRTRPISKAPYRMAPQNRKS
Homology
BLAST of Sed0005616 vs. NCBI nr
Match:
KAA0052126.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 200.7 bits (509), Expect = 2.2e-47
Identity = 139/413 (33.66%), Postives = 196/413 (47.46%), Query Frame = 0
Query: 1 MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
M CPE Q+ +CA L WW++T ER G + TW+ FK F AKF + ++
Sbjct: 339 MKCPEDQKVQCAVFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 398
Query: 61 KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
+ F NL+QG +E Y+ +F FAP++IAT + KF+ GLR + VRA
Sbjct: 399 AKRQKFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFR 458
Query: 121 PETFAKAVQLAT-----------------------------------------------I 180
P T A A++LA +
Sbjct: 459 PATHADALRLAVDLSLQERANSSKAAGRGSTSGQKRKTEQQPVLVPQRNFRSGAPHQGKV 518
Query: 181 YDGKRPQCTRVRSVSL-TQEVMDMEAVSAVREGHRARHCNLYMVVAQWLSNEEEEYMLRL 240
+ + + RV +V + T V+ A+ G + V+ L E +L +
Sbjct: 519 FATNKTEAERVGTVVIGTLPVLGHYALVLFDSGSSHSFISFAFVLHARLEVEPLHNVLSV 578
Query: 241 ARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMI 300
+ P + + +V+ +I+++ ++VTL+VL M FDVILGMDWLA HA I
Sbjct: 579 S------TPSGECMLSKEKVKTCQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAAKHASI 638
Query: 301 DCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLS 360
DC CKEV F PP SFKF+G S P VIS ++A +LL++G WG LA + +S
Sbjct: 639 DCSCKEVAFNPPSMASFKFKGEGSRSLPQVISTIRASKLLSQGTWGILASVVDTREVDVS 698
Query: 361 VGSAHSAR-VCGCFSEELHAC-AEREVDFSIELEPRTRPISKAPYRMAPQNRK 362
+ S R F EEL REV+F+IELEP T PIS+APYRMAP K
Sbjct: 699 LSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELK 743
BLAST of Sed0005616 vs. NCBI nr
Match:
KAA0048442.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 194.9 bits (494), Expect = 1.2e-45
Identity = 141/439 (32.12%), Postives = 193/439 (43.96%), Query Frame = 0
Query: 1 MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSP--PATWEFFKAEFKAKFINEEAQE 60
M CPE Q+ +CA L WW++ +ER G TWE FK F AKF + +
Sbjct: 134 MKCPEDQKVQCAVFFLEDRGTAWWET--AERMLGGDVNKITWEQFKENFYAKFFSANVKH 193
Query: 61 KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
++ F NL+QG +E Y+ +F FAP +I + KF+ GLR + VRA
Sbjct: 194 AKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMIRDEAARTEKFVRGLRLDLQGIVRALR 253
Query: 121 PETFAKAVQLA-------------------------------------TIYDGKRPQCTR 180
P T A A+++A T+ G Q R
Sbjct: 254 PATHADALRIALDLSLPERADSSKAAGRGSALGQKRKVETQPDVTPQRTLRSGGVFQRHR 313
Query: 181 VRSVSLTQEVMDMEAVSAV-------------------REGHRARHC------------- 240
+ + + ++ A + + GH A C
Sbjct: 314 RELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQSGHTADVCPRKPFETTPPQPS 373
Query: 241 -----NLYMVVAQWLSNEEEEYMLRLARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQV 300
++ Q L L P + LW +++ R++++++ L V
Sbjct: 374 ASQQGRVFATTRQEAERAGTVVTEPLGSVLSVSTPSGEVLWSKEQIKACRVEIANRMLDV 433
Query: 301 TLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAV 360
TL+VL M FDVILGMDWL+ NHA IDC KEVVF PP SFKFRG P VISA+
Sbjct: 434 TLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSEASFKFRGAGMVCIPKVISAM 493
Query: 361 KAHRLLARGAWGFLAKLTGENRDRLSVGSAHSAR-VCGCFSEELHAC-AEREVDFSIELE 362
KA +LL++G WG LA + +S+ S R F +EL REVDF+IELE
Sbjct: 494 KASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELE 553
BLAST of Sed0005616 vs. NCBI nr
Match:
KAA0062258.1 (gag protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 194.5 bits (493), Expect = 1.6e-45
Identity = 148/424 (34.91%), Postives = 202/424 (47.64%), Query Frame = 0
Query: 1 MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
M CPE Q+ +CA L WW++T ER G + TW+ FK F AKF + ++
Sbjct: 1 MKCPEDQKVQCAIFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 60
Query: 61 KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
+ F NL+QG +E Y+ KF FAP++IAT + KF+ LR + VRA
Sbjct: 61 AKRQEFLNLEQGDMTVEQYDAKFDMLSRFAPEMIATEAARADKFVRSLRLDIQGLVRAFR 120
Query: 121 PETFAKAVQLA---TIYDGKRPQCTRVR-SVSLTQEVMDMEAVSAVREGHR-ARHCNLYM 180
P T A A++LA ++ + T R S S + + + V + R A C L +
Sbjct: 121 PATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRSADRCPLRL 180
Query: 181 V-VAQ------------WLSNEEE----------------------------------EY 240
AQ + +N+ E +
Sbjct: 181 TGNAQNQGAGAPHQGRVFATNKTEAERAGTVVTGTLPVLGHYALVLFDSGPSHFFISSAF 240
Query: 241 MLR-------LARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQVTLIVLAMSGFDVILG 300
ML L L P + + +V+ +I+++ ++VTL+VL M FDVILG
Sbjct: 241 MLHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILG 300
Query: 301 MDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAVKAHRLLARGAWGFLA 360
MDWLA NHA IDC KEV F PP SFKF+G S P VISA+KA +LL++G WG LA
Sbjct: 301 MDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSRSLPQVISAIKASKLLSQGTWGILA 360
Query: 361 KLTGENRDRLSVGSAHSAR-VCGCFSEELHAC-AEREVDFSIELEPRTRPISKAPYRMAP 362
+ +S+ S R F EEL REV+F+IELEPRT PIS+APYRMAP
Sbjct: 361 SVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPHREVEFAIELEPRTVPISRAPYRMAP 420
BLAST of Sed0005616 vs. NCBI nr
Match:
KAA0046094.1 (gag protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 192.2 bits (487), Expect = 7.8e-45
Identity = 150/452 (33.19%), Postives = 203/452 (44.91%), Query Frame = 0
Query: 1 MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
M CPE Q+ +CA L WW++T ER G + TW+ FK F AKF + ++
Sbjct: 1842 MKCPEDQKVQCAVFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 1901
Query: 61 KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
+ F NL+QG +E Y+ +F FAP++IAT ++ KF+ GLR + VRA
Sbjct: 1902 AKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARVDKFVRGLRLDIQGLVRAFR 1961
Query: 121 PETFAKAVQLA---TIYDGKRPQCTRVRSVSLTQ-------------------------E 180
P T A A++LA ++ + T R + Q +
Sbjct: 1962 PATHANALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPHRNFRSGGEFRRFQ 2021
Query: 181 VMDMEAVSAVR-----EGHRARHCNLYMV-VAQ------------WLSNEEE-------- 240
EA A R EGH A C L + +AQ + +N E
Sbjct: 2022 QKPFEAEEAARGKPLQEGHTADRCPLRLTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVV 2081
Query: 241 --------EYML-------------------------RLARRLRKPDPQWQYLWLAGEVR 300
Y L L L P + + +V+
Sbjct: 2082 TGTLPVLGHYALVLFDSGSSHSFISSAFVSHAHLEVEPLHHVLSVSTPSGECMLSKEKVK 2141
Query: 301 DGRIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRG 360
+I+++ ++VTLIVL M FDVILGMDWLA NHA IDC KEV F PP SFKF+G
Sbjct: 2142 ACQIEIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKG 2201
Query: 361 TQSGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLSVGSAHSAR-VCGCFSEELHAC 362
S P VISA++A +LL++G WG L + +S+ S R F EEL
Sbjct: 2202 GGSKSLPQVISAIRASKLLSQGTWGILGSVVDTREADVSLSSEPVVRDYPDVFPEELPGL 2261
BLAST of Sed0005616 vs. NCBI nr
Match:
KAA0048687.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 190.7 bits (483), Expect = 2.3e-44
Identity = 149/450 (33.11%), Postives = 205/450 (45.56%), Query Frame = 0
Query: 1 MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
M CPE Q+ +CA L WW++T ER G + TW+ FK F AKF + ++
Sbjct: 141 MKCPEDQKVQCAVFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 200
Query: 61 KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
+ F NL+QG +E Y+ +F FAP++IAT + KF+ GLR + VRA
Sbjct: 201 AKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFR 260
Query: 121 PETFAKAVQLA---TIYDGKRPQCTRVRSVSLTQ-------------------------E 180
P T A A++LA ++ + T R ++ Q +
Sbjct: 261 PATHADALRLAVDLSLQERANSSKTAGRGLTSGQKRKAEQQPVPVPQRNFRSGGEFRRFQ 320
Query: 181 VMDMEAVSAVR----------------------------EGHRARHCNLYMV-VAQ---- 240
EA A R EGH A C L + AQ
Sbjct: 321 QKPFEAGEAARWKPLCTICGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRLTGNAQNQGA 380
Query: 241 --------WLSNEEE----------------EYMLRLARRLRKPDPQWQYLWLAGEVRDG 300
+ +N+ E Y L L + P + + +V+
Sbjct: 381 GAPHQGRVFATNKTEAEKAGTVVTGTLPVLGHYALVLFDSV--STPSGECMLSKEKVKTC 440
Query: 301 RIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQ 360
+I+++ ++VTL+VL M FDVILGMDWLA +HA IDC KEV F PP R SFKF+G
Sbjct: 441 QIEIAGHVIEVTLLVLDMLDFDVILGMDWLAAHHASIDCSRKEVTFNPPSRASFKFKGGG 500
Query: 361 SGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLSVGSAHSAR-VCGCFSEELHAC-A 362
S P VISA++A +LL++G WG LA + +S+ S R F EEL
Sbjct: 501 SRSLPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPP 560
BLAST of Sed0005616 vs. ExPASy TrEMBL
Match:
A0A5A7UD41 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G001190 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 1.1e-47
Identity = 139/413 (33.66%), Postives = 196/413 (47.46%), Query Frame = 0
Query: 1 MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
M CPE Q+ +CA L WW++T ER G + TW+ FK F AKF + ++
Sbjct: 339 MKCPEDQKVQCAVFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 398
Query: 61 KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
+ F NL+QG +E Y+ +F FAP++IAT + KF+ GLR + VRA
Sbjct: 399 AKRQKFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFR 458
Query: 121 PETFAKAVQLAT-----------------------------------------------I 180
P T A A++LA +
Sbjct: 459 PATHADALRLAVDLSLQERANSSKAAGRGSTSGQKRKTEQQPVLVPQRNFRSGAPHQGKV 518
Query: 181 YDGKRPQCTRVRSVSL-TQEVMDMEAVSAVREGHRARHCNLYMVVAQWLSNEEEEYMLRL 240
+ + + RV +V + T V+ A+ G + V+ L E +L +
Sbjct: 519 FATNKTEAERVGTVVIGTLPVLGHYALVLFDSGSSHSFISFAFVLHARLEVEPLHNVLSV 578
Query: 241 ARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMI 300
+ P + + +V+ +I+++ ++VTL+VL M FDVILGMDWLA HA I
Sbjct: 579 S------TPSGECMLSKEKVKTCQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAAKHASI 638
Query: 301 DCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLS 360
DC CKEV F PP SFKF+G S P VIS ++A +LL++G WG LA + +S
Sbjct: 639 DCSCKEVAFNPPSMASFKFKGEGSRSLPQVISTIRASKLLSQGTWGILASVVDTREVDVS 698
Query: 361 VGSAHSAR-VCGCFSEELHAC-AEREVDFSIELEPRTRPISKAPYRMAPQNRK 362
+ S R F EEL REV+F+IELEP T PIS+APYRMAP K
Sbjct: 699 LSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELK 743
BLAST of Sed0005616 vs. ExPASy TrEMBL
Match:
A0A5A7TY28 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G00240 PE=4 SV=1)
HSP 1 Score: 194.9 bits (494), Expect = 5.8e-46
Identity = 141/439 (32.12%), Postives = 193/439 (43.96%), Query Frame = 0
Query: 1 MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSP--PATWEFFKAEFKAKFINEEAQE 60
M CPE Q+ +CA L WW++ +ER G TWE FK F AKF + +
Sbjct: 134 MKCPEDQKVQCAVFFLEDRGTAWWET--AERMLGGDVNKITWEQFKENFYAKFFSANVKH 193
Query: 61 KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
++ F NL+QG +E Y+ +F FAP +I + KF+ GLR + VRA
Sbjct: 194 AKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMIRDEAARTEKFVRGLRLDLQGIVRALR 253
Query: 121 PETFAKAVQLA-------------------------------------TIYDGKRPQCTR 180
P T A A+++A T+ G Q R
Sbjct: 254 PATHADALRIALDLSLPERADSSKAAGRGSALGQKRKVETQPDVTPQRTLRSGGVFQRHR 313
Query: 181 VRSVSLTQEVMDMEAVSAV-------------------REGHRARHC------------- 240
+ + + ++ A + + GH A C
Sbjct: 314 RELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQSGHTADVCPRKPFETTPPQPS 373
Query: 241 -----NLYMVVAQWLSNEEEEYMLRLARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQV 300
++ Q L L P + LW +++ R++++++ L V
Sbjct: 374 ASQQGRVFATTRQEAERAGTVVTEPLGSVLSVSTPSGEVLWSKEQIKACRVEIANRMLDV 433
Query: 301 TLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAV 360
TL+VL M FDVILGMDWL+ NHA IDC KEVVF PP SFKFRG P VISA+
Sbjct: 434 TLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSEASFKFRGAGMVCIPKVISAM 493
Query: 361 KAHRLLARGAWGFLAKLTGENRDRLSVGSAHSAR-VCGCFSEELHAC-AEREVDFSIELE 362
KA +LL++G WG LA + +S+ S R F +EL REVDF+IELE
Sbjct: 494 KASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELE 553
BLAST of Sed0005616 vs. ExPASy TrEMBL
Match:
A0A5A7V3S4 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00240 PE=4 SV=1)
HSP 1 Score: 194.5 bits (493), Expect = 7.6e-46
Identity = 148/424 (34.91%), Postives = 202/424 (47.64%), Query Frame = 0
Query: 1 MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
M CPE Q+ +CA L WW++T ER G + TW+ FK F AKF + ++
Sbjct: 1 MKCPEDQKVQCAIFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 60
Query: 61 KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
+ F NL+QG +E Y+ KF FAP++IAT + KF+ LR + VRA
Sbjct: 61 AKRQEFLNLEQGDMTVEQYDAKFDMLSRFAPEMIATEAARADKFVRSLRLDIQGLVRAFR 120
Query: 121 PETFAKAVQLA---TIYDGKRPQCTRVR-SVSLTQEVMDMEAVSAVREGHR-ARHCNLYM 180
P T A A++LA ++ + T R S S + + + V + R A C L +
Sbjct: 121 PATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRSADRCPLRL 180
Query: 181 V-VAQ------------WLSNEEE----------------------------------EY 240
AQ + +N+ E +
Sbjct: 181 TGNAQNQGAGAPHQGRVFATNKTEAERAGTVVTGTLPVLGHYALVLFDSGPSHFFISSAF 240
Query: 241 MLR-------LARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQVTLIVLAMSGFDVILG 300
ML L L P + + +V+ +I+++ ++VTL+VL M FDVILG
Sbjct: 241 MLHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILG 300
Query: 301 MDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAVKAHRLLARGAWGFLA 360
MDWLA NHA IDC KEV F PP SFKF+G S P VISA+KA +LL++G WG LA
Sbjct: 301 MDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSRSLPQVISAIKASKLLSQGTWGILA 360
Query: 361 KLTGENRDRLSVGSAHSAR-VCGCFSEELHAC-AEREVDFSIELEPRTRPISKAPYRMAP 362
+ +S+ S R F EEL REV+F+IELEPRT PIS+APYRMAP
Sbjct: 361 SVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPHREVEFAIELEPRTVPISRAPYRMAP 420
BLAST of Sed0005616 vs. ExPASy TrEMBL
Match:
A0A5A7TSQ8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00170 PE=4 SV=1)
HSP 1 Score: 192.2 bits (487), Expect = 3.8e-45
Identity = 150/452 (33.19%), Postives = 203/452 (44.91%), Query Frame = 0
Query: 1 MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
M CPE Q+ +CA L WW++T ER G + TW+ FK F AKF + ++
Sbjct: 1842 MKCPEDQKVQCAVFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 1901
Query: 61 KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
+ F NL+QG +E Y+ +F FAP++IAT ++ KF+ GLR + VRA
Sbjct: 1902 AKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARVDKFVRGLRLDIQGLVRAFR 1961
Query: 121 PETFAKAVQLA---TIYDGKRPQCTRVRSVSLTQ-------------------------E 180
P T A A++LA ++ + T R + Q +
Sbjct: 1962 PATHANALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPHRNFRSGGEFRRFQ 2021
Query: 181 VMDMEAVSAVR-----EGHRARHCNLYMV-VAQ------------WLSNEEE-------- 240
EA A R EGH A C L + +AQ + +N E
Sbjct: 2022 QKPFEAEEAARGKPLQEGHTADRCPLRLTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVV 2081
Query: 241 --------EYML-------------------------RLARRLRKPDPQWQYLWLAGEVR 300
Y L L L P + + +V+
Sbjct: 2082 TGTLPVLGHYALVLFDSGSSHSFISSAFVSHAHLEVEPLHHVLSVSTPSGECMLSKEKVK 2141
Query: 301 DGRIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRG 360
+I+++ ++VTLIVL M FDVILGMDWLA NHA IDC KEV F PP SFKF+G
Sbjct: 2142 ACQIEIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKG 2201
Query: 361 TQSGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLSVGSAHSAR-VCGCFSEELHAC 362
S P VISA++A +LL++G WG L + +S+ S R F EEL
Sbjct: 2202 GGSKSLPQVISAIRASKLLSQGTWGILGSVVDTREADVSLSSEPVVRDYPDVFPEELPGL 2261
BLAST of Sed0005616 vs. ExPASy TrEMBL
Match:
A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)
HSP 1 Score: 190.7 bits (483), Expect = 1.1e-44
Identity = 149/450 (33.11%), Postives = 205/450 (45.56%), Query Frame = 0
Query: 1 MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
M CPE Q+ +CA L WW++T ER G + TW+ FK F AKF + ++
Sbjct: 141 MKCPEDQKVQCAVFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 200
Query: 61 KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
+ F NL+QG +E Y+ +F FAP++IAT + KF+ GLR + VRA
Sbjct: 201 AKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFR 260
Query: 121 PETFAKAVQLA---TIYDGKRPQCTRVRSVSLTQ-------------------------E 180
P T A A++LA ++ + T R ++ Q +
Sbjct: 261 PATHADALRLAVDLSLQERANSSKTAGRGLTSGQKRKAEQQPVPVPQRNFRSGGEFRRFQ 320
Query: 181 VMDMEAVSAVR----------------------------EGHRARHCNLYMV-VAQ---- 240
EA A R EGH A C L + AQ
Sbjct: 321 QKPFEAGEAARWKPLCTICGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRLTGNAQNQGA 380
Query: 241 --------WLSNEEE----------------EYMLRLARRLRKPDPQWQYLWLAGEVRDG 300
+ +N+ E Y L L + P + + +V+
Sbjct: 381 GAPHQGRVFATNKTEAEKAGTVVTGTLPVLGHYALVLFDSV--STPSGECMLSKEKVKTC 440
Query: 301 RIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQ 360
+I+++ ++VTL+VL M FDVILGMDWLA +HA IDC KEV F PP R SFKF+G
Sbjct: 441 QIEIAGHVIEVTLLVLDMLDFDVILGMDWLAAHHASIDCSRKEVTFNPPSRASFKFKGGG 500
Query: 361 SGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLSVGSAHSAR-VCGCFSEELHAC-A 362
S P VISA++A +LL++G WG LA + +S+ S R F EEL
Sbjct: 501 SRSLPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPP 560
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UD41 | 1.1e-47 | 33.66 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57... | [more] |
A0A5A7TY28 | 5.8e-46 | 32.12 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61... | [more] |
A0A5A7V3S4 | 7.6e-46 | 34.91 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... | [more] |
A0A5A7TSQ8 | 3.8e-45 | 33.19 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... | [more] |
A0A5A7U330 | 1.1e-44 | 33.11 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43... | [more] |
Match Name | E-value | Identity | Description | |