Sed0005616 (gene) Chayote v1

Overview


Name	Sed0005616
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase
Location	LG10: 23412450 .. 23413885 (-)
RNA-Seq Expression	Sed0005616
Synteny	Sed0005616

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTCCTGAGGTGCAGCGAGCTCGATGTGCAGCTCATGCGTTAGCTGGAACAGCTAAGTGGTGGTGGGATTCCACCTTGAGTGAGAGACCGGCTGGGTCTCCCCCTGCCACCTGGGAATTCTTCAAGGCTGAGTTCAAGGCAAAATTTATCAATGAAGAAGCCCAAGAAAAGATGATTGAGCTGTTTTCGAACCTTAAGCAGGGGTCTGACCCAATCGAGGTGTATGAGAGGAAGTTTTCGGAGTATGGGTACTTCGCACCGCAGTTGATTGCTACTCCTGAGCTGAAGATCAGGAAGTTTATTGCGGGTCTGAGGCAGGGAGTGTCTCAGGATGTTAGGGCACAGGCCCCAGAGACTTTTGCCAAGGCAGTGCAGTTGGCAACTATTTATGATGGAAAGTATCCTCCAGGAGCGGGTTGTTAGTCTGTGTGGTGCAGAAGGCCCCAGTGTACTCGGGTCAGAAGCGTAAGTTTGACGCAGGAGGTAATGGACATGGAGGCGGTCAGCGCCGTCAGGGTACTTATCATGGCAGAGACCAAAGACAGGATCGTAATCGTGATCGGCCTCGCCAACGAGGCGTAGGGAGGCCGCCACCGTATTGTAGACCCCCCGTGGTAAACAACATTGGGGGCCTTGTGGTGGTAACCCTAGAGCTTGCTATTCTTGTGGTAAGGAGGGGCATCGGGCCCGGCATTGCAACCTGTATATGGTGGTGGCACAGTGGCTCAGCAATGAGGAGGAAGAGTATATGCTACGACTCGCCAGGAGGCTGAGAAAGCCGGACCCGCAGTGGCAGGTACGCTCCTAGTTCTTGATCACCTCGCCTTTGTGTTGTTTGATTCGGGTTCCACCCATTCTTTTGTTTCTGCTGTTTTTGCTGAGCGTGCTTGCATGAATTTAGAGCCTCTAGGTTTTGAGTTATCTGTCGCTACTCCCTCGGGAACTAGTATCTTTGGCTAGCTGGAGAGGTAAGGGATGGTCGGATACAGGTGTCCGACCAGACTCTGCAGGTTACCCTCATAGTGTTAGCTATGAGCGGTTTTGATGTGATCCTCGGCATGGATTGGTTAGCTGATAACCACGCTATGATTGACTGTCGTTGTAAGGAGGTGGTGTTCAGGCCGCCAGGTAGGCCTAGCTTTAAATTTCGGGGCACCCAGAGTGGGGTGTGTCCGCCGGTGATTTCGGCAGTTAAAGCTCACCGTTTGTTAGCTCGAGGAGCTTGGGGTTTCTTAGCTAAGTTGACCGGCGAGAACCGTGACCGATTATCTGTCGGCAGTGCCCATAGTGCTAGAGTTTGCGGATGTTTTTCTGAAGAGTTGCACGCCTGCGCCGAGAGAGAGGTGGATTTCTCAATAGAGCTTGAGCCGAGGACTCGCCCTATCTCGAAAGCTCCTTATCGTATGGCGCCGCAGAATCGAAAGAGTTAA

mRNA sequence

ATGGCTTGTCCTGAGGTGCAGCGAGCTCGATGTGCAGCTCATGCGTTAGCTGGAACAGCTAAGTGGTGGTGGGATTCCACCTTGAGTGAGAGACCGGCTGGGTCTCCCCCTGCCACCTGGGAATTCTTCAAGGCTGAGTTCAAGGCAAAATTTATCAATGAAGAAGCCCAAGAAAAGATGATTGAGCTGTTTTCGAACCTTAAGCAGGGGTCTGACCCAATCGAGGTGTATGAGAGGAAGTTTTCGGAGTATGGGTACTTCGCACCGCAGTTGATTGCTACTCCTGAGCTGAAGATCAGGAAGTTTATTGCGGGTCTGAGGCAGGGAGTGTCTCAGGATGTTAGGGCACAGGCCCCAGAGACTTTTGCCAAGGCAGTGCAGTTGGCAACTATTTATGATGGAAAAAGGCCCCAGTGTACTCGGGTCAGAAGCGTAAGTTTGACGCAGGAGGTAATGGACATGGAGGCGGTCAGCGCCGTCAGGGAGGGGCATCGGGCCCGGCATTGCAACCTGTATATGGTGGTGGCACAGTGGCTCAGCAATGAGGAGGAAGAGTATATGCTACGACTCGCCAGGAGGCTGAGAAAGCCGGACCCGCAGTGGCAGTATCTTTGGCTAGCTGGAGAGGTAAGGGATGGTCGGATACAGGTGTCCGACCAGACTCTGCAGGTTACCCTCATAGTGTTAGCTATGAGCGGTTTTGATGTGATCCTCGGCATGGATTGGTTAGCTGATAACCACGCTATGATTGACTGTCGTTGTAAGGAGGTGGTGTTCAGGCCGCCAGGTAGGCCTAGCTTTAAATTTCGGGGCACCCAGAGTGGGGTGTGTCCGCCGGTGATTTCGGCAGTTAAAGCTCACCGTTTGTTAGCTCGAGGAGCTTGGGGTTTCTTAGCTAAGTTGACCGGCGAGAACCGTGACCGATTATCTGTCGGCAGTGCCCATAGTGCTAGAGTTTGCGGATGTTTTTCTGAAGAGTTGCACGCCTGCGCCGAGAGAGAGGTGGATTTCTCAATAGAGCTTGAGCCGAGGACTCGCCCTATCTCGAAAGCTCCTTATCGTATGGCGCCGCAGAATCGAAAGAGTTAA

Coding sequence (CDS)

ATGGCTTGTCCTGAGGTGCAGCGAGCTCGATGTGCAGCTCATGCGTTAGCTGGAACAGCTAAGTGGTGGTGGGATTCCACCTTGAGTGAGAGACCGGCTGGGTCTCCCCCTGCCACCTGGGAATTCTTCAAGGCTGAGTTCAAGGCAAAATTTATCAATGAAGAAGCCCAAGAAAAGATGATTGAGCTGTTTTCGAACCTTAAGCAGGGGTCTGACCCAATCGAGGTGTATGAGAGGAAGTTTTCGGAGTATGGGTACTTCGCACCGCAGTTGATTGCTACTCCTGAGCTGAAGATCAGGAAGTTTATTGCGGGTCTGAGGCAGGGAGTGTCTCAGGATGTTAGGGCACAGGCCCCAGAGACTTTTGCCAAGGCAGTGCAGTTGGCAACTATTTATGATGGAAAAAGGCCCCAGTGTACTCGGGTCAGAAGCGTAAGTTTGACGCAGGAGGTAATGGACATGGAGGCGGTCAGCGCCGTCAGGGAGGGGCATCGGGCCCGGCATTGCAACCTGTATATGGTGGTGGCACAGTGGCTCAGCAATGAGGAGGAAGAGTATATGCTACGACTCGCCAGGAGGCTGAGAAAGCCGGACCCGCAGTGGCAGTATCTTTGGCTAGCTGGAGAGGTAAGGGATGGTCGGATACAGGTGTCCGACCAGACTCTGCAGGTTACCCTCATAGTGTTAGCTATGAGCGGTTTTGATGTGATCCTCGGCATGGATTGGTTAGCTGATAACCACGCTATGATTGACTGTCGTTGTAAGGAGGTGGTGTTCAGGCCGCCAGGTAGGCCTAGCTTTAAATTTCGGGGCACCCAGAGTGGGGTGTGTCCGCCGGTGATTTCGGCAGTTAAAGCTCACCGTTTGTTAGCTCGAGGAGCTTGGGGTTTCTTAGCTAAGTTGACCGGCGAGAACCGTGACCGATTATCTGTCGGCAGTGCCCATAGTGCTAGAGTTTGCGGATGTTTTTCTGAAGAGTTGCACGCCTGCGCCGAGAGAGAGGTGGATTTCTCAATAGAGCTTGAGCCGAGGACTCGCCCTATCTCGAAAGCTCCTTATCGTATGGCGCCGCAGAATCGAAAGAGTTAA

Protein sequence

MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPATWEFFKAEFKAKFINEEAQEKMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQAPETFAKAVQLATIYDGKRPQCTRVRSVSLTQEVMDMEAVSAVREGHRARHCNLYMVVAQWLSNEEEEYMLRLARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLSVGSAHSARVCGCFSEELHACAEREVDFSIELEPRTRPISKAPYRMAPQNRKS

Homology

[Close]

BLAST of Sed0005616 vs. NCBI nr
Match: KAA0052126.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.7 bits (509), Expect = 2.2e-47
Identity = 139/413 (33.66%), Postives = 196/413 (47.46%), Query Frame = 0


Query: 1   MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
           M CPE Q+ +CA   L      WW++T  ER  G   +  TW+ FK  F AKF +   ++
Sbjct: 339 MKCPEDQKVQCAVFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 398

Query: 61  KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
              + F NL+QG   +E Y+ +F     FAP++IAT   +  KF+ GLR  +   VRA  
Sbjct: 399 AKRQKFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFR 458

Query: 121 PETFAKAVQLAT-----------------------------------------------I 180
           P T A A++LA                                                +
Sbjct: 459 PATHADALRLAVDLSLQERANSSKAAGRGSTSGQKRKTEQQPVLVPQRNFRSGAPHQGKV 518

Query: 181 YDGKRPQCTRVRSVSL-TQEVMDMEAVSAVREGHRARHCNLYMVVAQWLSNEEEEYMLRL 240
           +   + +  RV +V + T  V+   A+     G      +   V+   L  E    +L +
Sbjct: 519 FATNKTEAERVGTVVIGTLPVLGHYALVLFDSGSSHSFISFAFVLHARLEVEPLHNVLSV 578

Query: 241 ARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMI 300
           +       P  + +    +V+  +I+++   ++VTL+VL M  FDVILGMDWLA  HA I
Sbjct: 579 S------TPSGECMLSKEKVKTCQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAAKHASI 638

Query: 301 DCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLS 360
           DC CKEV F PP   SFKF+G  S   P VIS ++A +LL++G WG LA +       +S
Sbjct: 639 DCSCKEVAFNPPSMASFKFKGEGSRSLPQVISTIRASKLLSQGTWGILASVVDTREVDVS 698

Query: 361 VGSAHSAR-VCGCFSEELHAC-AEREVDFSIELEPRTRPISKAPYRMAPQNRK 362
           + S    R     F EEL      REV+F+IELEP T PIS+APYRMAP   K
Sbjct: 699 LSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELK 743

[Close]

BLAST of Sed0005616 vs. NCBI nr
Match: KAA0048442.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 1.2e-45
Identity = 141/439 (32.12%), Postives = 193/439 (43.96%), Query Frame = 0


Query: 1   MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSP--PATWEFFKAEFKAKFINEEAQE 60
           M CPE Q+ +CA   L      WW++  +ER  G      TWE FK  F AKF +   + 
Sbjct: 134 MKCPEDQKVQCAVFFLEDRGTAWWET--AERMLGGDVNKITWEQFKENFYAKFFSANVKH 193

Query: 61  KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
             ++ F NL+QG   +E Y+ +F     FAP +I     +  KF+ GLR  +   VRA  
Sbjct: 194 AKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMIRDEAARTEKFVRGLRLDLQGIVRALR 253

Query: 121 PETFAKAVQLA-------------------------------------TIYDGKRPQCTR 180
           P T A A+++A                                     T+  G   Q  R
Sbjct: 254 PATHADALRIALDLSLPERADSSKAAGRGSALGQKRKVETQPDVTPQRTLRSGGVFQRHR 313

Query: 181 VRSVSLTQEVMDMEAVSAV-------------------REGHRARHC------------- 240
               +  + + ++ A +                     + GH A  C             
Sbjct: 314 RELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQSGHTADVCPRKPFETTPPQPS 373

Query: 241 -----NLYMVVAQWLSNEEEEYMLRLARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQV 300
                 ++    Q            L   L    P  + LW   +++  R++++++ L V
Sbjct: 374 ASQQGRVFATTRQEAERAGTVVTEPLGSVLSVSTPSGEVLWSKEQIKACRVEIANRMLDV 433

Query: 301 TLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAV 360
           TL+VL M  FDVILGMDWL+ NHA IDC  KEVVF PP   SFKFRG      P VISA+
Sbjct: 434 TLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSEASFKFRGAGMVCIPKVISAM 493

Query: 361 KAHRLLARGAWGFLAKLTGENRDRLSVGSAHSAR-VCGCFSEELHAC-AEREVDFSIELE 362
           KA +LL++G WG LA +       +S+ S    R     F +EL      REVDF+IELE
Sbjct: 494 KASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELE 553

[Close]

BLAST of Sed0005616 vs. NCBI nr
Match: KAA0062258.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 1.6e-45
Identity = 148/424 (34.91%), Postives = 202/424 (47.64%), Query Frame = 0


Query: 1   MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
           M CPE Q+ +CA   L      WW++T  ER  G   +  TW+ FK  F AKF +   ++
Sbjct: 1   MKCPEDQKVQCAIFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 60

Query: 61  KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
              + F NL+QG   +E Y+ KF     FAP++IAT   +  KF+  LR  +   VRA  
Sbjct: 61  AKRQEFLNLEQGDMTVEQYDAKFDMLSRFAPEMIATEAARADKFVRSLRLDIQGLVRAFR 120

Query: 121 PETFAKAVQLA---TIYDGKRPQCTRVR-SVSLTQEVMDMEAVSAVREGHR-ARHCNLYM 180
           P T A A++LA   ++ +      T  R S S  +   + + V   +   R A  C L +
Sbjct: 121 PATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRSADRCPLRL 180

Query: 181 V-VAQ------------WLSNEEE----------------------------------EY 240
              AQ            + +N+ E                                   +
Sbjct: 181 TGNAQNQGAGAPHQGRVFATNKTEAERAGTVVTGTLPVLGHYALVLFDSGPSHFFISSAF 240

Query: 241 MLR-------LARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQVTLIVLAMSGFDVILG 300
           ML        L   L    P  + +    +V+  +I+++   ++VTL+VL M  FDVILG
Sbjct: 241 MLHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILG 300

Query: 301 MDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAVKAHRLLARGAWGFLA 360
           MDWLA NHA IDC  KEV F PP   SFKF+G  S   P VISA+KA +LL++G WG LA
Sbjct: 301 MDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSRSLPQVISAIKASKLLSQGTWGILA 360

Query: 361 KLTGENRDRLSVGSAHSAR-VCGCFSEELHAC-AEREVDFSIELEPRTRPISKAPYRMAP 362
            +       +S+ S    R     F EEL      REV+F+IELEPRT PIS+APYRMAP
Sbjct: 361 SVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPHREVEFAIELEPRTVPISRAPYRMAP 420

[Close]

BLAST of Sed0005616 vs. NCBI nr
Match: KAA0046094.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 7.8e-45
Identity = 150/452 (33.19%), Postives = 203/452 (44.91%), Query Frame = 0


Query: 1    MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
            M CPE Q+ +CA   L      WW++T  ER  G   +  TW+ FK  F AKF +   ++
Sbjct: 1842 MKCPEDQKVQCAVFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 1901

Query: 61   KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
               + F NL+QG   +E Y+ +F     FAP++IAT   ++ KF+ GLR  +   VRA  
Sbjct: 1902 AKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARVDKFVRGLRLDIQGLVRAFR 1961

Query: 121  PETFAKAVQLA---TIYDGKRPQCTRVRSVSLTQ-------------------------E 180
            P T A A++LA   ++ +      T  R  +  Q                         +
Sbjct: 1962 PATHANALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPHRNFRSGGEFRRFQ 2021

Query: 181  VMDMEAVSAVR-----EGHRARHCNLYMV-VAQ------------WLSNEEE-------- 240
                EA  A R     EGH A  C L +  +AQ            + +N  E        
Sbjct: 2022 QKPFEAEEAARGKPLQEGHTADRCPLRLTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVV 2081

Query: 241  --------EYML-------------------------RLARRLRKPDPQWQYLWLAGEVR 300
                     Y L                          L   L    P  + +    +V+
Sbjct: 2082 TGTLPVLGHYALVLFDSGSSHSFISSAFVSHAHLEVEPLHHVLSVSTPSGECMLSKEKVK 2141

Query: 301  DGRIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRG 360
              +I+++   ++VTLIVL M  FDVILGMDWLA NHA IDC  KEV F PP   SFKF+G
Sbjct: 2142 ACQIEIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKG 2201

Query: 361  TQSGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLSVGSAHSAR-VCGCFSEELHAC 362
              S   P VISA++A +LL++G WG L  +       +S+ S    R     F EEL   
Sbjct: 2202 GGSKSLPQVISAIRASKLLSQGTWGILGSVVDTREADVSLSSEPVVRDYPDVFPEELPGL 2261

[Close]

BLAST of Sed0005616 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 2.3e-44
Identity = 149/450 (33.11%), Postives = 205/450 (45.56%), Query Frame = 0


Query: 1   MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
           M CPE Q+ +CA   L      WW++T  ER  G   +  TW+ FK  F AKF +   ++
Sbjct: 141 MKCPEDQKVQCAVFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 200

Query: 61  KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
              + F NL+QG   +E Y+ +F     FAP++IAT   +  KF+ GLR  +   VRA  
Sbjct: 201 AKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFR 260

Query: 121 PETFAKAVQLA---TIYDGKRPQCTRVRSVSLTQ-------------------------E 180
           P T A A++LA   ++ +      T  R ++  Q                         +
Sbjct: 261 PATHADALRLAVDLSLQERANSSKTAGRGLTSGQKRKAEQQPVPVPQRNFRSGGEFRRFQ 320

Query: 181 VMDMEAVSAVR----------------------------EGHRARHCNLYMV-VAQ---- 240
               EA  A R                            EGH A  C L +   AQ    
Sbjct: 321 QKPFEAGEAARWKPLCTICGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRLTGNAQNQGA 380

Query: 241 --------WLSNEEE----------------EYMLRLARRLRKPDPQWQYLWLAGEVRDG 300
                   + +N+ E                 Y L L   +    P  + +    +V+  
Sbjct: 381 GAPHQGRVFATNKTEAEKAGTVVTGTLPVLGHYALVLFDSV--STPSGECMLSKEKVKTC 440

Query: 301 RIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQ 360
           +I+++   ++VTL+VL M  FDVILGMDWLA +HA IDC  KEV F PP R SFKF+G  
Sbjct: 441 QIEIAGHVIEVTLLVLDMLDFDVILGMDWLAAHHASIDCSRKEVTFNPPSRASFKFKGGG 500

Query: 361 SGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLSVGSAHSAR-VCGCFSEELHAC-A 362
           S   P VISA++A +LL++G WG LA +       +S+ S    R     F EEL     
Sbjct: 501 SRSLPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPP 560

[Close]

BLAST of Sed0005616 vs. ExPASy TrEMBL
Match: A0A5A7UD41 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G001190 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-47
Identity = 139/413 (33.66%), Postives = 196/413 (47.46%), Query Frame = 0


Query: 1   MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
           M CPE Q+ +CA   L      WW++T  ER  G   +  TW+ FK  F AKF +   ++
Sbjct: 339 MKCPEDQKVQCAVFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 398

Query: 61  KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
              + F NL+QG   +E Y+ +F     FAP++IAT   +  KF+ GLR  +   VRA  
Sbjct: 399 AKRQKFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFR 458

Query: 121 PETFAKAVQLAT-----------------------------------------------I 180
           P T A A++LA                                                +
Sbjct: 459 PATHADALRLAVDLSLQERANSSKAAGRGSTSGQKRKTEQQPVLVPQRNFRSGAPHQGKV 518

Query: 181 YDGKRPQCTRVRSVSL-TQEVMDMEAVSAVREGHRARHCNLYMVVAQWLSNEEEEYMLRL 240
           +   + +  RV +V + T  V+   A+     G      +   V+   L  E    +L +
Sbjct: 519 FATNKTEAERVGTVVIGTLPVLGHYALVLFDSGSSHSFISFAFVLHARLEVEPLHNVLSV 578

Query: 241 ARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMI 300
           +       P  + +    +V+  +I+++   ++VTL+VL M  FDVILGMDWLA  HA I
Sbjct: 579 S------TPSGECMLSKEKVKTCQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAAKHASI 638

Query: 301 DCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLS 360
           DC CKEV F PP   SFKF+G  S   P VIS ++A +LL++G WG LA +       +S
Sbjct: 639 DCSCKEVAFNPPSMASFKFKGEGSRSLPQVISTIRASKLLSQGTWGILASVVDTREVDVS 698

Query: 361 VGSAHSAR-VCGCFSEELHAC-AEREVDFSIELEPRTRPISKAPYRMAPQNRK 362
           + S    R     F EEL      REV+F+IELEP T PIS+APYRMAP   K
Sbjct: 699 LSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELK 743

[Close]

BLAST of Sed0005616 vs. ExPASy TrEMBL
Match: A0A5A7TY28 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G00240 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.8e-46
Identity = 141/439 (32.12%), Postives = 193/439 (43.96%), Query Frame = 0


Query: 1   MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSP--PATWEFFKAEFKAKFINEEAQE 60
           M CPE Q+ +CA   L      WW++  +ER  G      TWE FK  F AKF +   + 
Sbjct: 134 MKCPEDQKVQCAVFFLEDRGTAWWET--AERMLGGDVNKITWEQFKENFYAKFFSANVKH 193

Query: 61  KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
             ++ F NL+QG   +E Y+ +F     FAP +I     +  KF+ GLR  +   VRA  
Sbjct: 194 AKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMIRDEAARTEKFVRGLRLDLQGIVRALR 253

Query: 121 PETFAKAVQLA-------------------------------------TIYDGKRPQCTR 180
           P T A A+++A                                     T+  G   Q  R
Sbjct: 254 PATHADALRIALDLSLPERADSSKAAGRGSALGQKRKVETQPDVTPQRTLRSGGVFQRHR 313

Query: 181 VRSVSLTQEVMDMEAVSAV-------------------REGHRARHC------------- 240
               +  + + ++ A +                     + GH A  C             
Sbjct: 314 RELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQSGHTADVCPRKPFETTPPQPS 373

Query: 241 -----NLYMVVAQWLSNEEEEYMLRLARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQV 300
                 ++    Q            L   L    P  + LW   +++  R++++++ L V
Sbjct: 374 ASQQGRVFATTRQEAERAGTVVTEPLGSVLSVSTPSGEVLWSKEQIKACRVEIANRMLDV 433

Query: 301 TLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAV 360
           TL+VL M  FDVILGMDWL+ NHA IDC  KEVVF PP   SFKFRG      P VISA+
Sbjct: 434 TLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSEASFKFRGAGMVCIPKVISAM 493

Query: 361 KAHRLLARGAWGFLAKLTGENRDRLSVGSAHSAR-VCGCFSEELHAC-AEREVDFSIELE 362
           KA +LL++G WG LA +       +S+ S    R     F +EL      REVDF+IELE
Sbjct: 494 KASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPLPREVDFAIELE 553

[Close]

BLAST of Sed0005616 vs. ExPASy TrEMBL
Match: A0A5A7V3S4 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00240 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 7.6e-46
Identity = 148/424 (34.91%), Postives = 202/424 (47.64%), Query Frame = 0


Query: 1   MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
           M CPE Q+ +CA   L      WW++T  ER  G   +  TW+ FK  F AKF +   ++
Sbjct: 1   MKCPEDQKVQCAIFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 60

Query: 61  KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
              + F NL+QG   +E Y+ KF     FAP++IAT   +  KF+  LR  +   VRA  
Sbjct: 61  AKRQEFLNLEQGDMTVEQYDAKFDMLSRFAPEMIATEAARADKFVRSLRLDIQGLVRAFR 120

Query: 121 PETFAKAVQLA---TIYDGKRPQCTRVR-SVSLTQEVMDMEAVSAVREGHR-ARHCNLYM 180
           P T A A++LA   ++ +      T  R S S  +   + + V   +   R A  C L +
Sbjct: 121 PATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRSADRCPLRL 180

Query: 181 V-VAQ------------WLSNEEE----------------------------------EY 240
              AQ            + +N+ E                                   +
Sbjct: 181 TGNAQNQGAGAPHQGRVFATNKTEAERAGTVVTGTLPVLGHYALVLFDSGPSHFFISSAF 240

Query: 241 MLR-------LARRLRKPDPQWQYLWLAGEVRDGRIQVSDQTLQVTLIVLAMSGFDVILG 300
           ML        L   L    P  + +    +V+  +I+++   ++VTL+VL M  FDVILG
Sbjct: 241 MLHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILG 300

Query: 301 MDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQSGVCPPVISAVKAHRLLARGAWGFLA 360
           MDWLA NHA IDC  KEV F PP   SFKF+G  S   P VISA+KA +LL++G WG LA
Sbjct: 301 MDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSRSLPQVISAIKASKLLSQGTWGILA 360

Query: 361 KLTGENRDRLSVGSAHSAR-VCGCFSEELHAC-AEREVDFSIELEPRTRPISKAPYRMAP 362
            +       +S+ S    R     F EEL      REV+F+IELEPRT PIS+APYRMAP
Sbjct: 361 SVVDTREVDVSLSSEPVVRDYPDVFLEELPGLPPHREVEFAIELEPRTVPISRAPYRMAP 420

[Close]

BLAST of Sed0005616 vs. ExPASy TrEMBL
Match: A0A5A7TSQ8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00170 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.8e-45
Identity = 150/452 (33.19%), Postives = 203/452 (44.91%), Query Frame = 0


Query: 1    MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
            M CPE Q+ +CA   L      WW++T  ER  G   +  TW+ FK  F AKF +   ++
Sbjct: 1842 MKCPEDQKVQCAVFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 1901

Query: 61   KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
               + F NL+QG   +E Y+ +F     FAP++IAT   ++ KF+ GLR  +   VRA  
Sbjct: 1902 AKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARVDKFVRGLRLDIQGLVRAFR 1961

Query: 121  PETFAKAVQLA---TIYDGKRPQCTRVRSVSLTQ-------------------------E 180
            P T A A++LA   ++ +      T  R  +  Q                         +
Sbjct: 1962 PATHANALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPHRNFRSGGEFRRFQ 2021

Query: 181  VMDMEAVSAVR-----EGHRARHCNLYMV-VAQ------------WLSNEEE-------- 240
                EA  A R     EGH A  C L +  +AQ            + +N  E        
Sbjct: 2022 QKPFEAEEAARGKPLQEGHTADRCPLRLTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVV 2081

Query: 241  --------EYML-------------------------RLARRLRKPDPQWQYLWLAGEVR 300
                     Y L                          L   L    P  + +    +V+
Sbjct: 2082 TGTLPVLGHYALVLFDSGSSHSFISSAFVSHAHLEVEPLHHVLSVSTPSGECMLSKEKVK 2141

Query: 301  DGRIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRG 360
              +I+++   ++VTLIVL M  FDVILGMDWLA NHA IDC  KEV F PP   SFKF+G
Sbjct: 2142 ACQIEIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKG 2201

Query: 361  TQSGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLSVGSAHSAR-VCGCFSEELHAC 362
              S   P VISA++A +LL++G WG L  +       +S+ S    R     F EEL   
Sbjct: 2202 GGSKSLPQVISAIRASKLLSQGTWGILGSVVDTREADVSLSSEPVVRDYPDVFPEELPGL 2261

[Close]

BLAST of Sed0005616 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-44
Identity = 149/450 (33.11%), Postives = 205/450 (45.56%), Query Frame = 0


Query: 1   MACPEVQRARCAAHALAGTAKWWWDSTLSERPAGSPPA--TWEFFKAEFKAKFINEEAQE 60
           M CPE Q+ +CA   L      WW++T  ER  G   +  TW+ FK  F AKF +   ++
Sbjct: 141 MKCPEDQKVQCAVFMLTDRGTAWWETT--ERMLGGDVSQITWQQFKESFYAKFFSASLRD 200

Query: 61  KMIELFSNLKQGSDPIEVYERKFSEYGYFAPQLIATPELKIRKFIAGLRQGVSQDVRAQA 120
              + F NL+QG   +E Y+ +F     FAP++IAT   +  KF+ GLR  +   VRA  
Sbjct: 201 AKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFR 260

Query: 121 PETFAKAVQLA---TIYDGKRPQCTRVRSVSLTQ-------------------------E 180
           P T A A++LA   ++ +      T  R ++  Q                         +
Sbjct: 261 PATHADALRLAVDLSLQERANSSKTAGRGLTSGQKRKAEQQPVPVPQRNFRSGGEFRRFQ 320

Query: 181 VMDMEAVSAVR----------------------------EGHRARHCNLYMV-VAQ---- 240
               EA  A R                            EGH A  C L +   AQ    
Sbjct: 321 QKPFEAGEAARWKPLCTICGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRLTGNAQNQGA 380

Query: 241 --------WLSNEEE----------------EYMLRLARRLRKPDPQWQYLWLAGEVRDG 300
                   + +N+ E                 Y L L   +    P  + +    +V+  
Sbjct: 381 GAPHQGRVFATNKTEAEKAGTVVTGTLPVLGHYALVLFDSV--STPSGECMLSKEKVKTC 440

Query: 301 RIQVSDQTLQVTLIVLAMSGFDVILGMDWLADNHAMIDCRCKEVVFRPPGRPSFKFRGTQ 360
           +I+++   ++VTL+VL M  FDVILGMDWLA +HA IDC  KEV F PP R SFKF+G  
Sbjct: 441 QIEIAGHVIEVTLLVLDMLDFDVILGMDWLAAHHASIDCSRKEVTFNPPSRASFKFKGGG 500

Query: 361 SGVCPPVISAVKAHRLLARGAWGFLAKLTGENRDRLSVGSAHSAR-VCGCFSEELHAC-A 362
           S   P VISA++A +LL++G WG LA +       +S+ S    R     F EEL     
Sbjct: 501 SRSLPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPP 560

The following BLAST results are available for this feature:

BLAST of Sed0005616 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052126.1	2.2e-47	33.66	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048442.1	1.2e-45	32.12	pol protein [Cucumis melo var. makuwa]	[more]
KAA0062258.1	1.6e-45	34.91	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0046094.1	7.8e-45	33.19	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	2.3e-44	33.11	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0005616 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005616 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UD41	1.1e-47	33.66	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57...	[more]
A0A5A7TY28	5.8e-46	32.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61...	[more]
A0A5A7V3S4	7.6e-46	34.91	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7TSQ8	3.8e-45	33.19	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]
A0A5A7U330	1.1e-44	33.11	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]

BLAST of Sed0005616 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 11..108 e-value: 2.7E-16 score: 59.6
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 199..269 e-value: 6.1E-11 score: 44.2
None	No IPR available	PFAM	PF08284	RVP_2	coord: 214..260 e-value: 2.7E-12 score: 46.6
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 215..361
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 215..361

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005616.1	Sed0005616.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity