Sed0005536 (gene) Chayote v1

Overview


Name	Sed0005536
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Histone H3
Location	LG04: 1087188 .. 1088537 (-)
RNA-Seq Expression	Sed0005536
Synteny	Sed0005536

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTAATCGCGTCCATCCGCCGCCATACGGCATGGGTCTTCGCTCGAACCGGGGGGCCCTATAAAAAGAGCTGTGGTCGCCATTATTCCAATTCAATTTGCGTTTCAAAAAAATCCAAATCTATTCGAAGTCGATAATTTTCTCTCGTTTCTCAAGTCTTTGTTCATCAATCCAGGTTTGTTTCTGTTTGATTCTTTCATCTTCTTTTTGTTTTCTGAGAATTTTCTTTGCCCGATTAGTTTCTGCTTTCAAACTCCTGCGGATATGTTTAATTATATCCTCCAATTCCTTTAGAATAGAGATTTCAATTGAAGATTAGGTTTAGAATACTTTCTGGAATCTGTTTCTTGAACACCAACGATCTTAAAAGTTCGAATCATTAGAAGAAATTTTGCCATAGTTCGTGTAAATCTTCGCAATGGAATCGGAAGAATTAGGTCAAATTGTTCATTTTAATTACGATACGGAGTAAAATCGCGCATATGCGATGAAATTGTTTGAGAAATTTGTCTTGTTTTGATTTGAACGACATTGATGCAGATGGCTCGTACGAAGCAAACCGCTCGCAAATCCACCGGTGGGAAAGCTCCTAGGAAACAGCTTGCAACCAAGGTATGAGCGAAGAAGATTGGATTGCAACCTAATTCTTAATCCTCTTTTTTTGTTTTCCTGATCTAATGTATTGTTATCACAATTCCCTCAGGCTGCTCGTAAATCTGCTCCAACTACGGGAGGTGTGAAGAAACCACACAGATACCGTCCCGGAACTGTCGCACTTCGGTATGCAACCTTGAATATTGGATTCAACATTGTTTTGTTGTTTATAGGAATCTCATCCTCTGGTGTATATATGATGCAGTGAAATCCGTAAGTACCAGAAGAGTACTGAGCTTCTAATCCGCAAACTGCCATTCCAGAGGCTTGTGCGAGAAATTGCGCAAGATTTCAAGACGGATCTGCGTTTCCAGAGCCACGCGGTGTTGGCACTTCAAGAGGCGGCGGAAGCGTACCTGGTTGGGCTGTTTGAAGACACCAACTTGTGCGCCATTCATGCCAAGCGCGTTACCATTATGCCCAAAGATATTCAACTTGCCAGAAGAATTCGTGGGGAAAGAGCTTGATGATGATGATGATTTGATAGAATTTGTGTTTCTTTTGTTTTCGAATTTTAATCGCTGTGTAAATTGAGCGGTTTAGCTACATTAAACACAATCTCTATGTTCACTTTTTCTATTTCAGTGTTGTTTGCGAAATTCATTTGCCTATCATTCACCATTTCTTACTATATTTTGGCTCTCATGGATGATGAAATTTATTATGCTTTAAATTACACTGTTCGATTTAGTTTCA

mRNA sequence

TGTTAATCGCGTCCATCCGCCGCCATACGGCATGGGTCTTCGCTCGAACCGGGGGGCCCTATAAAAAGAGCTGTGGTCGCCATTATTCCAATTCAATTTGCGTTTCAAAAAAATCCAAATCTATTCGAAGTCGATAATTTTCTCTCGTTTCTCAAGTCTTTGTTCATCAATCCAGATGGCTCGTACGAAGCAAACCGCTCGCAAATCCACCGGTGGGAAAGCTCCTAGGAAACAGCTTGCAACCAAGGCTGCTCGTAAATCTGCTCCAACTACGGGAGGTGTGAAGAAACCACACAGATACCGTCCCGGAACTGTCGCACTTCGTGAAATCCGTAAGTACCAGAAGAGTACTGAGCTTCTAATCCGCAAACTGCCATTCCAGAGGCTTGTGCGAGAAATTGCGCAAGATTTCAAGACGGATCTGCGTTTCCAGAGCCACGCGGTGTTGGCACTTCAAGAGGCGGCGGAAGCGTACCTGGTTGGGCTGTTTGAAGACACCAACTTGTGCGCCATTCATGCCAAGCGCGTTACCATTATGCCCAAAGATATTCAACTTGCCAGAAGAATTCGTGGGGAAAGAGCTTGATGATGATGATGATTTGATAGAATTTGTGTTTCTTTTGTTTTCGAATTTTAATCGCTGTGTAAATTGAGCGGTTTAGCTACATTAAACACAATCTCTATGTTCACTTTTTCTATTTCAGTGTTGTTTGCGAAATTCATTTGCCTATCATTCACCATTTCTTACTATATTTTGGCTCTCATGGATGATGAAATTTATTATGCTTTAAATTACACTGTTCGATTTAGTTTCA

Coding sequence (CDS)

ATGGCTCGTACGAAGCAAACCGCTCGCAAATCCACCGGTGGGAAAGCTCCTAGGAAACAGCTTGCAACCAAGGCTGCTCGTAAATCTGCTCCAACTACGGGAGGTGTGAAGAAACCACACAGATACCGTCCCGGAACTGTCGCACTTCGTGAAATCCGTAAGTACCAGAAGAGTACTGAGCTTCTAATCCGCAAACTGCCATTCCAGAGGCTTGTGCGAGAAATTGCGCAAGATTTCAAGACGGATCTGCGTTTCCAGAGCCACGCGGTGTTGGCACTTCAAGAGGCGGCGGAAGCGTACCTGGTTGGGCTGTTTGAAGACACCAACTTGTGCGCCATTCATGCCAAGCGCGTTACCATTATGCCCAAAGATATTCAACTTGCCAGAAGAATTCGTGGGGAAAGAGCTTGA

Protein sequence

MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Homology

[Close]

BLAST of Sed0005536 vs. NCBI nr
Match: KAG6598700.1 (hypothetical protein SDJN03_08478, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 62  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 121

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 122 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 181

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 182 MPKDIQLARRIRGERA 197

[Close]

BLAST of Sed0005536 vs. NCBI nr
Match: XP_039807871.1 (histone H3.3-like [Panicum virgatum])

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 38  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 97

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 98  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 157

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 158 MPKDIQLARRIRGERA 173

[Close]

BLAST of Sed0005536 vs. NCBI nr
Match: KAF9612072.1 (hypothetical protein IFM89_037991 [Coptis chinensis])

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 118 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 177

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 178 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 237

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 238 MPKDIQLARRIRGERA 253

[Close]

BLAST of Sed0005536 vs. NCBI nr
Match: KAF9681853.1 (hypothetical protein SADUNF_Sadunf05G0046100 [Salix dunnii])

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 658 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 717

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 718 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 777

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 778 MPKDIQLARRIRGERA 793

[Close]

BLAST of Sed0005536 vs. NCBI nr
Match: KAG6585308.1 (O-fucosyltransferase 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 593 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 652

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 653 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 712

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 713 MPKDIQLARRIRGERA 728

[Close]

BLAST of Sed0005536 vs. ExPASy Swiss-Prot
Match: P59169 (Histone H3.3 OS=Arabidopsis thaliana OX=3702 GN=HTR4 PE=1 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Sed0005536 vs. ExPASy Swiss-Prot
Match: Q6RUR1 (Histone H3.3 OS=Capsicum annuum OX=4072 PE=2 SV=3)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Sed0005536 vs. ExPASy Swiss-Prot
Match: Q71V89 (Histone H3.3 OS=Gossypium hirsutum OX=3635 GN=HIS3 PE=2 SV=3)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Sed0005536 vs. ExPASy Swiss-Prot
Match: Q3C2E5 (Histone H3.3 OS=Lolium multiflorum OX=4521 GN=RH3 PE=2 SV=3)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Sed0005536 vs. ExPASy Swiss-Prot
Match: P69245 (Histone H3.3 OS=Lolium temulentum OX=34176 PE=2 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Sed0005536 vs. ExPASy TrEMBL
Match: A0A7S0JMT0 (Hypothetical protein OS=Minchinia chitonis OX=262233 GN=MCHI0186_LOCUS489 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.0e-65
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 123 MPKDIQLARRIRGERA 138

[Close]

BLAST of Sed0005536 vs. ExPASy TrEMBL
Match: A0A0V0RDG7 (Histone H3 OS=Trichinella nelsoni OX=6336 GN=T07_6184 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.0e-65
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Sed0005536 vs. ExPASy TrEMBL
Match: A0A5D2HEA1 (Histone H3 OS=Gossypium darwinii OX=34276 GN=ES288_A02G110500v1 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.0e-65
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Sed0005536 vs. ExPASy TrEMBL
Match: Q6LB28 (Histone H3 OS=Solanum lycopersicum OX=4081 GN=101263309 PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.0e-65
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Sed0005536 vs. ExPASy TrEMBL
Match: A0A6J1J540 (Histone H3 OS=Cucurbita maxima OX=3661 GN=LOC111483511 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.0e-65
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Sed0005536 vs. TAIR 10
Match: AT4G40030.1 (Histone superfamily protein )

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Sed0005536 vs. TAIR 10
Match: AT4G40040.1 (Histone superfamily protein )

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Sed0005536 vs. TAIR 10
Match: AT4G40040.2 (Histone superfamily protein )

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Sed0005536 vs. TAIR 10
Match: AT4G40030.2 (Histone superfamily protein )

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 29  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 88

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 89  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 148

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 149 MPKDIQLARRIRGERA 164

[Close]

BLAST of Sed0005536 vs. TAIR 10
Match: AT4G40030.3 (Histone superfamily protein )

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of Sed0005536 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598700.1	1.7e-64	100.00	hypothetical protein SDJN03_08478, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_039807871.1	1.7e-64	100.00	histone H3.3-like [Panicum virgatum]	[more]
KAF9612072.1	1.7e-64	100.00	hypothetical protein IFM89_037991 [Coptis chinensis]	[more]
KAF9681853.1	1.7e-64	100.00	hypothetical protein SADUNF_Sadunf05G0046100 [Salix dunnii]	[more]
KAG6585308.1	1.7e-64	100.00	O-fucosyltransferase 7, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0005536 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P59169	2.2e-67	100.00	Histone H3.3 OS=Arabidopsis thaliana OX=3702 GN=HTR4 PE=1 SV=2	[more]
Q6RUR1	2.2e-67	100.00	Histone H3.3 OS=Capsicum annuum OX=4072 PE=2 SV=3	[more]
Q71V89	2.2e-67	100.00	Histone H3.3 OS=Gossypium hirsutum OX=3635 GN=HIS3 PE=2 SV=3	[more]
Q3C2E5	2.2e-67	100.00	Histone H3.3 OS=Lolium multiflorum OX=4521 GN=RH3 PE=2 SV=3	[more]
P69245	2.2e-67	100.00	Histone H3.3 OS=Lolium temulentum OX=34176 PE=2 SV=2	[more]

BLAST of Sed0005536 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7S0JMT0	8.0e-65	100.00	Hypothetical protein OS=Minchinia chitonis OX=262233 GN=MCHI0186_LOCUS489 PE=4 S...	[more]
A0A0V0RDG7	8.0e-65	100.00	Histone H3 OS=Trichinella nelsoni OX=6336 GN=T07_6184 PE=3 SV=1	[more]
A0A5D2HEA1	8.0e-65	100.00	Histone H3 OS=Gossypium darwinii OX=34276 GN=ES288_A02G110500v1 PE=3 SV=1	[more]
Q6LB28	8.0e-65	100.00	Histone H3 OS=Solanum lycopersicum OX=4081 GN=101263309 PE=2 SV=1	[more]
A0A6J1J540	8.0e-65	100.00	Histone H3 OS=Cucurbita maxima OX=3661 GN=LOC111483511 PE=3 SV=1	[more]

BLAST of Sed0005536 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G40030.1	1.5e-68	100.00	Histone superfamily protein	[more]
AT4G40040.1	1.5e-68	100.00	Histone superfamily protein	[more]
AT4G40040.2	1.5e-68	100.00	Histone superfamily protein	[more]
AT4G40030.2	1.5e-68	100.00	Histone superfamily protein	[more]
AT4G40030.3	1.5e-68	100.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 114..135 score: 94.86 coord: 98..114 score: 96.93 coord: 80..98 score: 82.38 coord: 3..17 score: 97.1 coord: 17..31 score: 92.32 coord: 34..55 score: 91.8 coord: 58..75 score: 97.46
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 34..136 e-value: 1.1E-74 score: 264.1
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 1..136
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 67..75
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 15..21
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 1..132 e-value: 9.1E-54 score: 181.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..136 e-value: 6.1E-76 score: 254.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 2..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR11426:SF198	SUBFAMILY NOT NAMED	coord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005536.1	Sed0005536.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity