Sed0005338 (gene) Chayote v1

Overview


Name	Sed0005338
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pre-mRNA cleavage factor Im 25 kDa subunit
Location	LG02: 51715912 .. 51719467 (-)
RNA-Seq Expression	Sed0005338
Synteny	Sed0005338

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTTACCAGTTGTCGTCTTGTCCTCTGTTTTCCGTTTCAAGTATCCGTAGAGTTGAACGGAACGGAGCCATGGCGACGGCGATAGCGACGGCGATGACGACGGCGCCGGTGGTGAATACGTATCCACTTTCAAGCTACACATTCGGCAACAAAGAGCCGAAGCTCGAGAAGGACACATCCGTTGCTGATCGCCTTGCTCGCATGAAAATCAAGTACTCCAAATTCACTCCCTAATTTATTTGTTTTTTTCAACGTCTTAGGGTTCTGTTGTTTTTTATCGCTTTACATTTGATATGTAGTTCTACATTGGCTTTGTAGAATTAGTAACTAATTGTGTAGAGTACATAATAGAGGTGTTCATATATTTTCCGAAAATCGATTTGAATGATCGAAACCAACTGATTTAGGGTTGGTTAGTCGATTTTCAAGTATATGTTGTCGGCGTCATTTATAAAAATAGTTATTCTCAGCTCGAAGTTGGTGTTGAACTAGTTTACAACCAAACACTGAAACCGTTGATCACCGCCACCGACCCATTCGATACCGAAATTTTTTGTTAAGTAGGTTGTTTTAGTGGTTTAGTCGGGTAACCAAATATTTTTTTTATATATAAATGGGCTTTCAAAAAATGATTCCATGTGCATTTTTTAAAAATTATTTCACAAAATTTAATTGAAAAAATTGTATGGTGAATACGTTTTTTTTAATTAAAAATATAATATGAATTAACTAATTTTATTGAAACCAACAGAGATTGATGGGTTGGTTTGGTGTCGATCTTCACTTACTAATAGATGAACACCCCTTTATTTGTTTTTTTTTCGAAAAACAATATATGACGTGTTTCTAATTTCATTTAAAGAAAAAGGGATTGGGAGCTCCTTAAGAAATTGTATCACTTAATTTTATACAAGTGATTTTTTCATAGGTAAACTTAGTGTTGTTTTTATTTTATTTTTATTGTTTGAATCGATTGCCTTAAAAAAATAACTTTCATATAATTGCTTTAGAGGGAATGAGTAACTTGTCTTGCTGTTTATTTCACTTCACAGCTATATGAAGGAAGGCATGAGAACAAGTGTTGAAGCTATTCTGGTGGTAAGTATCTAGAACAACCAGTAATGTTATCTTTCATATTTCAATTCTCTGCTCGCCTCTAAGCCGCCATCGAACTCGAAATCGAGCCGCTCTCCATGTCACTAACTAACTACTCTTTAGGAGAAACTGTTGTTGTACTGCTATAGTTTCTGAACAGCTTTGATTGAGTTAGACTAGAGAATTATAGTTTTTGCCTATTTCTTGAATTGCTCTCTTTTTAGTTGGTACATTTCAATGATTAATATTCACGAGAATCACATCTTTGAATATTTCCCACAGGTGCAAGAACATAACCATCCCCATATTCTACTACTCCAAATTGGAAATACCTTTTGTAAGCTTCCTGGGGGTCGGTTGAAGCCTGGAGAAAATGGTAAGATTTTATAAATCCCCACATCCCATTGAGTAAAAACATATATCTCTTCATTTTGCTTTCTGGTGGAAGATATAGAACATGCAGAACGATTACACATCTACTGACGAGTCACGAAAATTCCCAAGCGTAGATCATCATCGAACTCTATTACCTTTCTTGCCATTTCTTGAGCCCAGAAATCTTTACCTTTCAAAGATAATAGTTTTACTGCTCTTTTATCCCATTGGAAAGGCTTTTTGTAACTTTTGATAGACTTTTTGTAATTTTTCATCCAATCAATGAAAGTTTTTCGTTTTTCATCAAAAAAGAAAAGAACAGTAAAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATCTCACGTTTATCCTAACATCCACAGAAATTGATGGTTTAAAGAGGAAACTGACCAGCAAACTAGGTGGAAGTTCATCTGCCGCCTACCAGCCTGATTGGCAGGTTTGTGTCAATTCTCAAATATATATTTTATGGAATTATATATGTTCCTATGAGGAGTTAAGATTCTTTGTTTCAAATTTCCTGCAGATTGGCGAATGTGTGGCTATTTGGTGGAGACCAAATTTTGAAACTGTCATGTATCCTTATTGTCCTCCTCATATTACAAAACCCAAGGTATCTCTCTCGACCCCACGCTTATATGAGTTTAGTCATAAAATCTCTGGTTGTCTCTCAGGTCTGGGTCTTGGGATGGGCGTGGGCACCCCTCGGTATCCAATAGCCTCGTTATTATCCTCTTTTTTGGGTTGGGGAACGTCCTGATCTCCATTTTCTTCTCACTGTGATTTGCATTGTCAAGATAGCAGAAATCCTTTTGAGGGACTCTTTTTTATAGCAGTTTTAAGAAATAAGAACTTTTGAAGAGAAAAAAAAAAGAAGAAAACTCTAATTCGGTTTTTGGTGATTCAGGAATGTAAAAAGATTTTTATCGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTATGACAATGTTCAGGTAAATTGCCTTTTCCCATGTAGGCTCACATGAGGGGAAAAGTTCATTGTGAATTTTTTGAAAACGTAAGATCGGTTTGATAATTATTTGATATTTGTTTTTTGAAATTTAAGTCTATTTTTGCGATAATATGTTACATCTTTCCTACATCATATCCATATTTTCTTAAGAAAGCATGTGGATGCTAATCAAATTTAAAAAACAAAACAAACTTTTGGAAGTTAGTTGTTTTTTGGTTTTCAAACTTTGATTTGGTTTCTAAAAATATAACTTATAAGTAAATATGTAGATATAAAAATAAGAAAAAATATATGGTAAGCTAGTTTGTAGTAGGGTTAAATTTCAAAAATAAAAAACTAAAAACAAAATGATTATCAAACGGGTCCTAAATAATTAATACGTGGTTTGTTTGTTTTTTTTGAAAATAATATGCTGTTTGTTGGATATCAAGGAAAAGATAAATTTTAGATCGAAACTTTAGATGCTGGATATGATATTGATAGTACATGTAGTCTCTGTTAGTCTCAAAATACCATGTTTTTCGCACTTGATCGCAGCGATATGGACCGATTATATCGACGATCCCGCACCATCTTTCCAGGTTTTGGTTCAACATGGTCACCACACGAGATTGCAACACATGAAGTCCATATTTGCACCAGTGACGTATAATCTTACTTATTTGGCTGAGGTATTCTTATTTGGCTTAGTTAGAACTTGAAGACATTCTTTTTTCTTTTTAATTCTAAATTTTGTGGATGGCTTTCTGAGCCTAAAGCCCAAGAAAAATTTATGCTTCTGATCAGAGCAGCTAAATGAAAATCGAATGACTATTGTTGGTATTTTGTTTTTCAAAAGCGTCAAACCAAAAAACATTTTCGATAATCGTTTTTTATTTTAAAAATTCAAAACAACACTTGATTAATGTTTGTAATTTTTAATTAAAAAAAAGCAAATTATTTTTATAGTATTATTCATCTTTTTTTATGTATGTCTTGACTATTCAATTTATAAAAGTGT

mRNA sequence

AGTTTACCAGTTGTCGTCTTGTCCTCTGTTTTCCGTTTCAAGTATCCGTAGAGTTGAACGGAACGGAGCCATGGCGACGGCGATAGCGACGGCGATGACGACGGCGCCGGTGGTGAATACGTATCCACTTTCAAGCTACACATTCGGCAACAAAGAGCCGAAGCTCGAGAAGGACACATCCGTTGCTGATCGCCTTGCTCGCATGAAAATCAACTATATGAAGGAAGGCATGAGAACAAGTGTTGAAGCTATTCTGGTGGTGCAAGAACATAACCATCCCCATATTCTACTACTCCAAATTGGAAATACCTTTTGTAAGCTTCCTGGGGGTCGGTTGAAGCCTGGAGAAAATGAAATTGATGGTTTAAAGAGGAAACTGACCAGCAAACTAGGTGGAAGTTCATCTGCCGCCTACCAGCCTGATTGGCAGATTGGCGAATGTGTGGCTATTTGGTGGAGACCAAATTTTGAAACTGTCATGTATCCTTATTGTCCTCCTCATATTACAAAACCCAAGGAATGTAAAAAGATTTTTATCGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTATGACAATGTTCAGCGATATGGACCGATTATATCGACGATCCCGCACCATCTTTCCAGGTTTTGGTTCAACATGGTCACCACACGAGATTGCAACACATGAAGTCCATATTTGCACCAGTGACGTATAATCTTACTTATTTGGCTGAGGTATTCTTATTTGGCTTAGTTAGAACTTGAAGACATTCTTTTTTCTTTTTAATTCTAAATTTTGTGGATGGCTTTCTGAGCCTAAAGCCCAAGAAAAATTTATGCTTCTGATCAGAGCAGCTAAATGAAAATCGAATGACTATTGTTGGTATTTTGTTTTTCAAAAGCGTCAAACCAAAAAACATTTTCGATAATCGTTTTTTATTTTAAAAATTCAAAACAACACTTGATTAATGTTTGTAATTTTTAATTAAAAAAAAGCAAATTATTTTTATAGTATTATTCATCTTTTTTTATGTATGTCTTGACTATTCAATTTATAAAAGTGT

Coding sequence (CDS)

ATGGCGACGGCGATAGCGACGGCGATGACGACGGCGCCGGTGGTGAATACGTATCCACTTTCAAGCTACACATTCGGCAACAAAGAGCCGAAGCTCGAGAAGGACACATCCGTTGCTGATCGCCTTGCTCGCATGAAAATCAACTATATGAAGGAAGGCATGAGAACAAGTGTTGAAGCTATTCTGGTGGTGCAAGAACATAACCATCCCCATATTCTACTACTCCAAATTGGAAATACCTTTTGTAAGCTTCCTGGGGGTCGGTTGAAGCCTGGAGAAAATGAAATTGATGGTTTAAAGAGGAAACTGACCAGCAAACTAGGTGGAAGTTCATCTGCCGCCTACCAGCCTGATTGGCAGATTGGCGAATGTGTGGCTATTTGGTGGAGACCAAATTTTGAAACTGTCATGTATCCTTATTGTCCTCCTCATATTACAAAACCCAAGGAATGTAAAAAGATTTTTATCGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTATGACAATGTTCAGCGATATGGACCGATTATATCGACGATCCCGCACCATCTTTCCAGGTTTTGGTTCAACATGGTCACCACACGAGATTGCAACACATGA

Protein sequence

MATAIATAMTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPIISTIPHHLSRFWFNMVTTRDCNT

Homology

[Close]

BLAST of Sed0005338 vs. NCBI nr
Match: XP_022147484.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Momordica charantia] >XP_022950750.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Cucurbita moschata] >XP_022974610.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Cucurbita maxima] >XP_022975252.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like isoform X1 [Cucurbita maxima] >XP_022975253.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like isoform X2 [Cucurbita maxima] >XP_022975430.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Cucurbita maxima] >XP_023541013.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Cucurbita pepo subsp. pepo] >KAG7028617.1 Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 386.7 bits (992), Expect = 1.3e-103
Identity = 183/201 (91.04%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           M T+PVVNTYPLSSYTFG KEPKLEKDTSVADRLARMK+NYMKEGMRTSVEAIL+VQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKL G++S A QPDWQIGECVAIW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKL-GANSPALQPDWQIGECVAIW 120

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFETVMYPYCPPHITKPKECKK+FIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 180

Query: 189 GPIISTIPHHLSRFWFNMVTT 210
           GP+ISTIP  LSRF FNM+TT
Sbjct: 181 GPVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0005338 vs. NCBI nr
Match: GAV81269.1 (NUDIX_2 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 386.0 bits (990), Expect = 2.2e-103
Identity = 181/200 (90.50%), Postives = 192/200 (96.00%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           M T+PVVNTYPLSSYTFG KEPK+EKDTSVADRLARMK+NYMKEGMRTSVEAIL+VQEHN
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
           HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKL G++SAA  PDWQIGECVAIW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKL-GANSAALVPDWQIGECVAIW 120

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFET+MYPYCPPHITKPKECKK+F+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 180

Query: 189 GPIISTIPHHLSRFWFNMVT 209
           GP+ISTIP  LSRF FNM+T
Sbjct: 181 GPVISTIPQQLSRFQFNMIT 199

[Close]

BLAST of Sed0005338 vs. NCBI nr
Match: XP_004133873.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus] >XP_008438064.1 PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis melo] >XP_038876350.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Benincasa hispida] >KAA0048979.1 Cleavage/polyadenylation specificity factor, 25kDa subunit [Cucumis melo var. makuwa] >TYK17587.1 Cleavage/polyadenylation specificity factor, 25kDa subunit [Cucumis melo var. makuwa])

HSP 1 Score: 385.6 bits (989), Expect = 2.8e-103
Identity = 182/201 (90.55%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           M T+PVVNTYPLSSYTFG KEPKLEKDTSVADRLARMK+NYMKEGMRTSVEAIL+VQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKL G++S + QPDWQIGECVAIW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKL-GANSPSLQPDWQIGECVAIW 120

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFETVMYPYCPPHITKPKECKK+FIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 180

Query: 189 GPIISTIPHHLSRFWFNMVTT 210
           GP+ISTIP  LSRF FNM+TT
Sbjct: 181 GPVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0005338 vs. NCBI nr
Match: XP_031259563.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Pistacia vera] >XP_031261299.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Pistacia vera])

HSP 1 Score: 384.4 bits (986), Expect = 6.3e-103
Identity = 180/201 (89.55%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           M T+PVVNTYPLSSYTFG KEPK+EKDTSVADRLARMK+NYMKEGMRTSVEAIL+VQEHN
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKL G++S A  PDWQIGECVAIW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKL-GANSPALVPDWQIGECVAIW 120

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFET+MYPYCPPHITKPKECKK+F+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 180

Query: 189 GPIISTIPHHLSRFWFNMVTT 210
           GP+ISTIP  LSRF FNM+TT
Sbjct: 181 GPVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0005338 vs. NCBI nr
Match: XP_022924789.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita moschata] >XP_022980420.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita maxima] >XP_023528578.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.0 bits (985), Expect = 8.3e-103
Identity = 182/201 (90.55%), Postives = 191/201 (95.02%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           M T+PVVNTYPLSSYTFG KEPKLEKDTSVADRLARMK+NYMKEGMRTSVEAIL+VQEHN
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKL G++S A QPDWQIGECVA W
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKL-GANSPALQPDWQIGECVATW 120

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFETVMYPYCPPHITK KECKK+FIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 180

Query: 189 GPIISTIPHHLSRFWFNMVTT 210
           GP+ISTIP  LSRF FNM+TT
Sbjct: 181 GPVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0005338 vs. ExPASy Swiss-Prot
Match: Q8GXS3 (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 8.0e-101
Identity = 172/201 (85.57%), Postives = 187/201 (93.03%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           M  + VVNTYPLS+Y+FG KEPKLEKDTSVADRLARMKINYMKEGMRTSVE IL+VQEHN
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
           HPHILLLQIGNTFCKLPGGRLKPGENE DGLKRKLTSKLGG +SAA  PDW +GECVA W
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGG-NSAALVPDWTVGECVATW 120

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFET+MYPYCPPHITKPKECK+++IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRY 180

Query: 189 GPIISTIPHHLSRFWFNMVTT 210
           GP+ISTIP  LSRF FNM+++
Sbjct: 181 GPVISTIPQQLSRFHFNMISS 200

[Close]

BLAST of Sed0005338 vs. ExPASy Swiss-Prot
Match: Q6DJE4 (Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis OX=8355 GN=nudt21 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 5.1e-63
Identity = 115/196 (58.67%), Postives = 139/196 (70.92%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           +T    +N YPL++YTFG KEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH 
Sbjct: 31  LTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
            PH+LLLQ+G TF KLPGG L PGE+E++GLKR +T  LG       Q DW I +C+  W
Sbjct: 91  LPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGV--QQDWVIDDCIGNW 150

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFE   YPY P HITKPKE KK+F+V L E+  FAVPKN KL+A PLFELYDN   Y
Sbjct: 151 WRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGY 210

Query: 189 GPIISTIPHHLSRFWF 205
           GPIIS++P  LSRF F
Sbjct: 211 GPIISSLPQLLSRFNF 224

[Close]

BLAST of Sed0005338 vs. ExPASy Swiss-Prot
Match: Q3ZCA2 (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.5e-62
Identity = 114/196 (58.16%), Postives = 138/196 (70.41%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           +T    +N YPL++YTFG KEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH 
Sbjct: 31  LTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
            PH+LLLQ+G TF KLPGG L PGE+E++GLKR +T  LG         DW I +C+  W
Sbjct: 91  LPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVL--QDWVIDDCIGNW 150

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFE   YPY P HITKPKE KK+F+V L E+  FAVPKN KL+A PLFELYDN   Y
Sbjct: 151 WRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGY 210

Query: 189 GPIISTIPHHLSRFWF 205
           GPIIS++P  LSRF F
Sbjct: 211 GPIISSLPQLLSRFNF 224

[Close]

BLAST of Sed0005338 vs. ExPASy Swiss-Prot
Match: Q7T3C6 (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio OX=7955 GN=nudt21 PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.5e-62
Identity = 115/202 (56.93%), Postives = 140/202 (69.31%), Query Frame = 0


Query: 3   TAIATAMTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAIL 62
           T     +T    +N YPL++YTFG KEP  EKD+SVA R  RM+  + K GMR +VE +L
Sbjct: 26  TQATKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVL 85

Query: 63  VVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIG 122
           +V EH  PH+LLLQ+G TF KLPGG L PGE+E++GLKR +T  LG       + DW I 
Sbjct: 86  IVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGV--KQDWVID 145

Query: 123 ECVAIWWRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELY 182
           +C+  WWRPNFE   YPY P HITKPKE KK+F+V L E+  FAVPKN KL+A PLFELY
Sbjct: 146 DCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELY 205

Query: 183 DNVQRYGPIISTIPHHLSRFWF 205
           DN   YGPIIS++P  LSRF F
Sbjct: 206 DNAPGYGPIISSLPQLLSRFNF 225

[Close]

BLAST of Sed0005338 vs. ExPASy Swiss-Prot
Match: O43809 (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=9606 GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.5e-62
Identity = 114/196 (58.16%), Postives = 138/196 (70.41%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           +T    +N YPL++YTFG KEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH 
Sbjct: 31  LTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
            PH+LLLQ+G TF KLPGG L PGE+E++GLKR +T  LG         DW I +C+  W
Sbjct: 91  LPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVL--QDWVIDDCIGNW 150

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFE   YPY P HITKPKE KK+F+V L E+  FAVPKN KL+A PLFELYDN   Y
Sbjct: 151 WRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGY 210

Query: 189 GPIISTIPHHLSRFWF 205
           GPIIS++P  LSRF F
Sbjct: 211 GPIISSLPQLLSRFNF 224

[Close]

BLAST of Sed0005338 vs. ExPASy TrEMBL
Match: A0A6J1IEE3 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita maxima OX=3661 GN=LOC111473295 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.2e-104
Identity = 183/201 (91.04%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           M T+PVVNTYPLSSYTFG KEPKLEKDTSVADRLARMK+NYMKEGMRTSVEAIL+VQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKL G++S A QPDWQIGECVAIW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKL-GANSPALQPDWQIGECVAIW 120

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFETVMYPYCPPHITKPKECKK+FIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 180

Query: 189 GPIISTIPHHLSRFWFNMVTT 210
           GP+ISTIP  LSRF FNM+TT
Sbjct: 181 GPVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0005338 vs. ExPASy TrEMBL
Match: A0A6J1D153 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Momordica charantia OX=3673 GN=LOC111016395 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.2e-104
Identity = 183/201 (91.04%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           M T+PVVNTYPLSSYTFG KEPKLEKDTSVADRLARMK+NYMKEGMRTSVEAIL+VQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKL G++S A QPDWQIGECVAIW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKL-GANSPALQPDWQIGECVAIW 120

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFETVMYPYCPPHITKPKECKK+FIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 180

Query: 189 GPIISTIPHHLSRFWFNMVTT 210
           GP+ISTIP  LSRF FNM+TT
Sbjct: 181 GPVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0005338 vs. ExPASy TrEMBL
Match: A0A6J1GGL6 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC111453755 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.2e-104
Identity = 183/201 (91.04%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           M T+PVVNTYPLSSYTFG KEPKLEKDTSVADRLARMK+NYMKEGMRTSVEAIL+VQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKL G++S A QPDWQIGECVAIW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKL-GANSPALQPDWQIGECVAIW 120

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFETVMYPYCPPHITKPKECKK+FIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 180

Query: 189 GPIISTIPHHLSRFWFNMVTT 210
           GP+ISTIP  LSRF FNM+TT
Sbjct: 181 GPVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0005338 vs. ExPASy TrEMBL
Match: A0A1Q3CM00 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_24727 PE=3 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.1e-103
Identity = 181/200 (90.50%), Postives = 192/200 (96.00%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           M T+PVVNTYPLSSYTFG KEPK+EKDTSVADRLARMK+NYMKEGMRTSVEAIL+VQEHN
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
           HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKL G++SAA  PDWQIGECVAIW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKL-GANSAALVPDWQIGECVAIW 120

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFET+MYPYCPPHITKPKECKK+F+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 180

Query: 189 GPIISTIPHHLSRFWFNMVT 209
           GP+ISTIP  LSRF FNM+T
Sbjct: 181 GPVISTIPQQLSRFQFNMIT 199

[Close]

BLAST of Sed0005338 vs. ExPASy TrEMBL
Match: A0A5D3D0Y8 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004570 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.4e-103
Identity = 182/201 (90.55%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           M T+PVVNTYPLSSYTFG KEPKLEKDTSVADRLARMK+NYMKEGMRTSVEAIL+VQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKL G++S + QPDWQIGECVAIW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKL-GANSPSLQPDWQIGECVAIW 120

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFETVMYPYCPPHITKPKECKK+FIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 180

Query: 189 GPIISTIPHHLSRFWFNMVTT 210
           GP+ISTIP  LSRF FNM+TT
Sbjct: 181 GPVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0005338 vs. TAIR 10
Match: AT4G25550.1 (Cleavage/polyadenylation specificity factor, 25kDa subunit )

HSP 1 Score: 367.9 bits (943), Expect = 5.7e-102
Identity = 172/201 (85.57%), Postives = 187/201 (93.03%), Query Frame = 0


Query: 9   MTTAPVVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHN 68
           M  + VVNTYPLS+Y+FG KEPKLEKDTSVADRLARMKINYMKEGMRTSVE IL+VQEHN
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 69  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIW 128
           HPHILLLQIGNTFCKLPGGRLKPGENE DGLKRKLTSKLGG +SAA  PDW +GECVA W
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGG-NSAALVPDWTVGECVATW 120

Query: 129 WRPNFETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY 188
           WRPNFET+MYPYCPPHITKPKECK+++IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRY 180

Query: 189 GPIISTIPHHLSRFWFNMVTT 210
           GP+ISTIP  LSRF FNM+++
Sbjct: 181 GPVISTIPQQLSRFHFNMISS 200

[Close]

BLAST of Sed0005338 vs. TAIR 10
Match: AT4G29820.1 (homolog of CFIM-25 )

HSP 1 Score: 232.3 bits (591), Expect = 3.7e-61
Identity = 107/194 (55.15%), Postives = 144/194 (74.23%), Query Frame = 0


Query: 14  VVNTYPLSSYTFGNKEPKLEKDTSVADRLARMKINYMKEGMRTSVEAILVVQEHNHPHIL 73
           +V+ YPLSSY FG+KE    KD  ++DR+ R+K NY   G+RT VEA+L+V+   HPH+L
Sbjct: 28  MVDLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVL 87

Query: 74  LLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGGSSSAAYQPDWQIGECVAIWWRPNF 133
           LLQ  N+  KLPGGRL+PGE++I+GLKRKL SKL  + +      +++GEC+ +WWRPNF
Sbjct: 88  LLQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVS-GYEVGECIGMWWRPNF 147

Query: 134 ETVMYPYCPPHITKPKECKKIFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPIIS 193
           ET+MYP+ PP+I  PKEC K+F+V L   + F VPKN KLLAVPL +L++N + YGPI+S
Sbjct: 148 ETLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMS 207

Query: 194 TIPHHLSRFWFNMV 208
            IP  LS+F FNM+
Sbjct: 208 QIPKLLSKFSFNMM 220

The following BLAST results are available for this feature:

BLAST of Sed0005338 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147484.1	1.3e-103	91.04	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Momordica charantia] >XP_022950750...	[more]
GAV81269.1	2.2e-103	90.50	NUDIX_2 domain-containing protein [Cephalotus follicularis]	[more]
XP_004133873.1	2.8e-103	90.55	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus] >XP_008438064.1 P...	[more]
XP_031259563.1	6.3e-103	89.55	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Pistacia vera] >XP_031261299.1 pre...	[more]
XP_022924789.1	8.3e-103	90.55	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita moschata] >XP_022980420....	[more]

BLAST of Sed0005338 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GXS3	8.0e-101	85.57	Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q6DJE4	5.1e-63	58.67	Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis OX=8...	[more]
Q3ZCA2	2.5e-62	58.16	Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 ...	[more]
Q7T3C6	2.5e-62	56.93	Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio OX=7955...	[more]
O43809	2.5e-62	58.16	Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=960...	[more]

BLAST of Sed0005338 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IEE3	6.2e-104	91.04	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1D153	6.2e-104	91.04	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1GGL6	6.2e-104	91.04	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A1Q3CM00	1.1e-103	90.50	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cephalotus follicularis OX=3775 GN...	[more]
A0A5D3D0Y8	1.4e-103	90.55	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of Sed0005338 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25550.1	5.7e-102	85.57	Cleavage/polyadenylation specificity factor, 25kDa subunit	[more]
AT4G29820.1	3.7e-61	55.15	homolog of CFIM-25	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 14..206 e-value: 4.1E-90 score: 302.3
None	No IPR available	PANTHER	PTHR13047:SF2	PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 2-LIKE	coord: 5..191
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PFAM	PF13869	NUDIX_2	coord: 14..202 e-value: 8.6E-83 score: 276.5
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PIRSF	PIRSF017888	CPSF-25	coord: 2..210 e-value: 7.3E-96 score: 317.7
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PANTHER	PTHR13047	PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT	coord: 5..191
IPR000086	NUDIX hydrolase domain	PROSITE	PS51462	NUDIX	coord: 54..180 score: 8.665177
IPR015797	NUDIX hydrolase-like domain superfamily	SUPERFAMILY	55811	Nudix	coord: 55..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005338.1	Sed0005338.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005849	mRNA cleavage factor complex
molecular_function	GO:0003729	mRNA binding