Sed0005326 (gene) Chayote v1

Overview


Name	Sed0005326
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DUF4228 domain-containing protein
Location	LG08: 35972169 .. 35973226 (+)
RNA-Seq Expression	Sed0005326
Synteny	Sed0005326

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAATAAAGAATGAATGAATGAATGTGAAGTCCAAAATATAAAAACATTATTAATTAATAAAGGAAGGGAAAAAAAGAAAAAATGATGAAGCTCTCACTCTCTCTCGATCTTTTGATCTCCCCCTTCTCCCCTCTCTCAATTCTTCTCTTTCCTCCAAGAAATTGACCAAAAAAAGAAGCAATGAAAAACAGCATAAGATGCTGCATATCCTGCATTTTACCATGCGGAGCTCTTGATGTAATTCGCATAGTCCATTCCAATGGCTACGTCGAAGAAATCAGCGGCTCCATCAAAGCCTCCGATGTCATGAAAGCTCATCCCAAACACGTCCTTAAAAAGCCTTCCTCCTCCGTCGACGATGACGATCCCACCACCGTCCCGAAGATCGTCATCGTCCCGCCCGAGGCCGACCTTCAGCGCGGTAAGATTTATTTCCTCATGCCCCTGCCTCCCAACCCCGACAAGGCCCGCTCCCGATCCTCATCCAGGAGAAAAAAGAGAGATCATGTTAACAACAACAACCACAACAACAACGCTACCCACCACTCTGCTGCTGTCGATAGCAACGCAATTTCCATGACGAATCTCCTCGTTTCCGACCAGTACCTCTCCGAAATCCTCTCCGAAAAGGCCTCGACCCACCACTGCGAACGACGACGCGGCCGCGTCGGCGTCTGGAGACCTCACTTGCAGAGCATTTGTGAGTCCCCCAGTGATATCTAGAAATTACCGGCTACTCAGGTTGTGGGTTGTTTTTTTTTTCCTTTTTAACATATATTATTATATCATCATTTTCTTTTACCTCATGATCATTTATTTTACAAAAAATGTTCATATATCCCTTTTATTTTATCTTCCAAATTTACCAGATTGATTATTGAAGAGAGGGGATCTGAAATAAATTAATTACTTTTTAGAGAGAGCCCACTTTTGATCACTGTGTGTGAGAATTCATGTGTGTGTGTGTGTGTGTTTGCATGAACAAAAGAACATAATTTTGAGTGATTGTGATATATGATGATATGGTTGTACAGCTACAAAATAATCTATACCCA

mRNA sequence

GAAAAATAAAGAATGAATGAATGAATGTGAAGTCCAAAATATAAAAACATTATTAATTAATAAAGGAAGGGAAAAAAAGAAAAAATGATGAAGCTCTCACTCTCTCTCGATCTTTTGATCTCCCCCTTCTCCCCTCTCTCAATTCTTCTCTTTCCTCCAAGAAATTGACCAAAAAAAGAAGCAATGAAAAACAGCATAAGATGCTGCATATCCTGCATTTTACCATGCGGAGCTCTTGATGTAATTCGCATAGTCCATTCCAATGGCTACGTCGAAGAAATCAGCGGCTCCATCAAAGCCTCCGATGTCATGAAAGCTCATCCCAAACACGTCCTTAAAAAGCCTTCCTCCTCCGTCGACGATGACGATCCCACCACCGTCCCGAAGATCGTCATCGTCCCGCCCGAGGCCGACCTTCAGCGCGGTAAGATTTATTTCCTCATGCCCCTGCCTCCCAACCCCGACAAGGCCCGCTCCCGATCCTCATCCAGGAGAAAAAAGAGAGATCATGTTAACAACAACAACCACAACAACAACGCTACCCACCACTCTGCTGCTGTCGATAGCAACGCAATTTCCATGACGAATCTCCTCGTTTCCGACCAGTACCTCTCCGAAATCCTCTCCGAAAAGGCCTCGACCCACCACTGCGAACGACGACGCGGCCGCGTCGGCGTCTGGAGACCTCACTTGCAGAGCATTTGTGAGTCCCCCAGTGATATCTAGAAATTACCGGCTACTCAGGTTGTGGGTTGTTTTTTTTTTCCTTTTTAACATATATTATTATATCATCATTTTCTTTTACCTCATGATCATTTATTTTACAAAAAATGTTCATATATCCCTTTTATTTTATCTTCCAAATTTACCAGATTGATTATTGAAGAGAGGGGATCTGAAATAAATTAATTACTTTTTAGAGAGAGCCCACTTTTGATCACTGTGTGTGAGAATTCATGTGTGTGTGTGTGTGTGTTTGCATGAACAAAAGAACATAATTTTGAGTGATTGTGATATATGATGATATGGTTGTACAGCTACAAAATAATCTATACCCA

Coding sequence (CDS)

ATGAAAAACAGCATAAGATGCTGCATATCCTGCATTTTACCATGCGGAGCTCTTGATGTAATTCGCATAGTCCATTCCAATGGCTACGTCGAAGAAATCAGCGGCTCCATCAAAGCCTCCGATGTCATGAAAGCTCATCCCAAACACGTCCTTAAAAAGCCTTCCTCCTCCGTCGACGATGACGATCCCACCACCGTCCCGAAGATCGTCATCGTCCCGCCCGAGGCCGACCTTCAGCGCGGTAAGATTTATTTCCTCATGCCCCTGCCTCCCAACCCCGACAAGGCCCGCTCCCGATCCTCATCCAGGAGAAAAAAGAGAGATCATGTTAACAACAACAACCACAACAACAACGCTACCCACCACTCTGCTGCTGTCGATAGCAACGCAATTTCCATGACGAATCTCCTCGTTTCCGACCAGTACCTCTCCGAAATCCTCTCCGAAAAGGCCTCGACCCACCACTGCGAACGACGACGCGGCCGCGTCGGCGTCTGGAGACCTCACTTGCAGAGCATTTGTGAGTCCCCCAGTGATATCTAG

Protein sequence

MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKRDHVNNNNHNNNATHHSAAVDSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPSDI

Homology

[Close]

BLAST of Sed0005326 vs. NCBI nr
Match: KAG6583958.1 (hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 274.6 bits (701), Expect = 5.9e-70
Identity = 155/202 (76.73%), Postives = 164/202 (81.19%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP----SS 60
           M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP    SS
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  SVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKRDHVNNNNHN 120
           +   DD + +PKIVIVPPEADLQRGKIYFLMPLPPNPDK RSRSSSRRKKR  V NNN+ 
Sbjct: 61  AACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKR--VTNNNNK 120

Query: 121 NNATHH---------SAAVDS---------NAISMTNLLVSDQYLSEILSEKASTHHCER 180
           NN  HH         SA  DS         N+ISM+NLLVSDQYLSEILSEKASTH  ER
Sbjct: 121 NN--HHSDRTPPAAASATADSDDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHR-ER 180

[Close]

BLAST of Sed0005326 vs. NCBI nr
Match: KAG7019577.1 (hypothetical protein SDJN02_18538, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.5 bits (698), Expect = 1.3e-69
Identity = 155/205 (75.61%), Postives = 164/205 (80.00%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP----SS 60
           M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP    SS
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  SVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKRDHVNNNNHN 120
           +   DD + +PKIVIVPPEADLQRGKIYFLMPLPPNPDK RSRSSSRRKKR  V NNN+ 
Sbjct: 61  AACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKR--VTNNNNK 120

Query: 121 NNATHH-------------SAAVDS--------NAISMTNLLVSDQYLSEILSEKASTHH 180
           NN  HH             SA  DS        N+ISM+NLLVSDQYLSEILSEKASTH 
Sbjct: 121 NN--HHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHR 180

[Close]

BLAST of Sed0005326 vs. NCBI nr
Match: XP_023519997.1 (uncharacterized protein LOC111783307, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67
Identity = 147/195 (75.38%), Postives = 162/195 (83.08%), Query Frame = 0


Query: 5   IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP-------SSS 64
           IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP       SS+
Sbjct: 2   IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSSSSA 61

Query: 65  VDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKR--DHVNNNNH 124
              DD + +PKIVIVPPEADLQRGKIYFLMPLPPNPDK RSRSSSRRKKR  ++ N NNH
Sbjct: 62  ACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNNH 121

Query: 125 NNNATHHSAAV----------DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGV 181
           +++ T  +AA           ++N+ISM+NLLVSDQYLSEILSEKASTH  ERRRGRVGV
Sbjct: 122 HSDRTPPAAAAAASATADPDDNNNSISMSNLLVSDQYLSEILSEKASTHR-ERRRGRVGV 181

[Close]

BLAST of Sed0005326 vs. NCBI nr
Match: XP_023001645.1 (rhoGEF domain-containing protein gxcI-like [Cucurbita maxima])

HSP 1 Score: 265.8 bits (678), Expect = 2.8e-67
Identity = 152/204 (74.51%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDD 60
           M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS    
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  ----DDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKRDHVNNNNHN 120
               DD + +PKIVIVPPEADLQRGKIYFLMPLPPNPDK RSRSSSRRKKR  V NNN+ 
Sbjct: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKR--VTNNNNK 120

Query: 121 NNATHHS------------AAVDSN--------AISMTNLLVSDQYLSEILSEKASTHHC 180
           NN  HHS            A  D N        +ISM+NL VSDQYLSEILSEKASTH  
Sbjct: 121 NN--HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHR- 180

[Close]

BLAST of Sed0005326 vs. NCBI nr
Match: KGN65978.2 (hypothetical protein Csa_019723 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 8.9e-66
Identity = 143/186 (76.88%), Postives = 156/186 (83.87%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKK---PSSS 60
           MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKK   PSSS
Sbjct: 3   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 62

Query: 61  VDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKRDHVNNNNHNN 120
              D  + +PKIVIVPPEADLQRGKIYFLMPLPP+PDK R     RRKKR++ NN++   
Sbjct: 63  AAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR-----RRKKREYSNNHHRTT 122

Query: 121 NATHHSAAV---DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSIC 180
            A   ++AV    +N+ISMTNLLVSD YLSEILS+KASTH  ERRRGRVGVWRPHLQSIC
Sbjct: 123 TAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHR-ERRRGRVGVWRPHLQSIC 182

[Close]

BLAST of Sed0005326 vs. ExPASy TrEMBL
Match: A0A6J1KLR7 (rhoGEF domain-containing protein gxcI-like OS=Cucurbita maxima OX=3661 GN=LOC111495719 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.3e-67
Identity = 152/204 (74.51%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDD 60
           M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS    
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  ----DDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKRDHVNNNNHN 120
               DD + +PKIVIVPPEADLQRGKIYFLMPLPPNPDK RSRSSSRRKKR  V NNN+ 
Sbjct: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKR--VTNNNNK 120

Query: 121 NNATHHS------------AAVDSN--------AISMTNLLVSDQYLSEILSEKASTHHC 180
           NN  HHS            A  D N        +ISM+NL VSDQYLSEILSEKASTH  
Sbjct: 121 NN--HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHR- 180

[Close]

BLAST of Sed0005326 vs. ExPASy TrEMBL
Match: A0A0A0M094 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G471460 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.3e-66
Identity = 143/186 (76.88%), Postives = 156/186 (83.87%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKK---PSSS 60
           MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKK   PSSS
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  VDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKRDHVNNNNHNN 120
              D  + +PKIVIVPPEADLQRGKIYFLMPLPP+PDK R     RRKKR++ NN++   
Sbjct: 61  AAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR-----RRKKREYSNNHHRTT 120

Query: 121 NATHHSAAV---DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSIC 180
            A   ++AV    +N+ISMTNLLVSD YLSEILS+KASTH  ERRRGRVGVWRPHLQSIC
Sbjct: 121 TAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHR-ERRRGRVGVWRPHLQSIC 180

[Close]

BLAST of Sed0005326 vs. ExPASy TrEMBL
Match: A0A5A7UMG1 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002290 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.3e-65
Identity = 143/189 (75.66%), Postives = 156/189 (82.54%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP----SS 60
           MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKP    SS
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  SVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKRDHVNNNNHN 120
           S   D  +++PKIVIVPPEADLQRGKIYFLMPLPP+PDK R     RRKKR+H NN++  
Sbjct: 61  SAAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR-----RRKKREHSNNHHRT 120

Query: 121 NNATHHSAAV-----DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQ 180
                 ++AV     ++N ISMTNLLVSD YLSEILS+KASTH  ERRRGRVGVWRPHLQ
Sbjct: 121 ITTASTASAVPDTTTNNNNISMTNLLVSDHYLSEILSDKASTHR-ERRRGRVGVWRPHLQ 180

[Close]

BLAST of Sed0005326 vs. ExPASy TrEMBL
Match: A0A1S3B8G2 (uncharacterized protein LOC103486913 OS=Cucumis melo OX=3656 GN=LOC103486913 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.3e-65
Identity = 143/189 (75.66%), Postives = 156/189 (82.54%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP----SS 60
           MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKP    SS
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  SVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKRDHVNNNNHN 120
           S   D  +++PKIVIVPPEADLQRGKIYFLMPLPP+PDK R     RRKKR+H NN++  
Sbjct: 61  SAAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR-----RRKKREHSNNHHRT 120

Query: 121 NNATHHSAAV-----DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQ 180
                 ++AV     ++N ISMTNLLVSD YLSEILS+KASTH  ERRRGRVGVWRPHLQ
Sbjct: 121 ITTASTASAVPDTTTNNNNISMTNLLVSDHYLSEILSDKASTHR-ERRRGRVGVWRPHLQ 180

[Close]

BLAST of Sed0005326 vs. ExPASy TrEMBL
Match: F6HM99 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g01310 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.4e-62
Identity = 127/178 (71.35%), Postives = 151/178 (84.83%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDD 60
           MKN+IRCCISCILPCGALDV+RIVHSNG+VEEISG+I AS++MKAHPKHVLKKPSSS ++
Sbjct: 1   MKNTIRCCISCILPCGALDVVRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSSSEE 60

Query: 61  DDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKRDHVNNNNHNNNAT 120
                VPKIV+VPP+A+LQRGKIYFLMP+PP P+K RSRSS+R+K+RD  +N   N N  
Sbjct: 61  G---VVPKIVVVPPDAELQRGKIYFLMPIPPPPEKTRSRSSTRKKRRDSESN---NTNTH 120

Query: 121 HHSAAVDSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPS 179
           HH +   +N ISMTNLL+SD+YLSEILSEK ST   +RRRGRVGVWRPHL+SI E+PS
Sbjct: 121 HHHSNTANNTISMTNLLISDRYLSEILSEKISTQR-DRRRGRVGVWRPHLESISETPS 171

[Close]

BLAST of Sed0005326 vs. TAIR 10
Match: AT1G29195.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 176.8 bits (447), Expect = 1.6e-44
Identity = 108/192 (56.25%), Postives = 129/192 (67.19%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDD 60
           MK +IRCCI+CILPCGALDVIRIVHSNG+VEEISG+I AS++MKAHPKHVLKKPSS   D
Sbjct: 1   MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query: 61  DDPTTV---PKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRR---------KKRD 120
            D   V    KIVIVPPEA+LQRGKIYFLMP   + DK       RR         KKR 
Sbjct: 61  HDERDVISATKIVIVPPEAELQRGKIYFLMPATKS-DKCAGGGKIRREKSNANAVVKKRS 120

Query: 121 HVNNNNHNNNATHHSAAVDSNAISMTN-----LLVSDQYLSEILSEKASTHHCERRRGRV 176
                + + +   +    +SN +   N     L+ SD+YL+EILSEK +T   +RR+GRV
Sbjct: 121 QYRRQHRDGDEKCNGG--ESNDVKDKNYEKDLLISSDRYLTEILSEKVATQK-DRRKGRV 180

[Close]

BLAST of Sed0005326 vs. TAIR 10
Match: AT1G06980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 125.6 bits (314), Expect = 4.2e-29
Identity = 77/180 (42.78%), Postives = 108/180 (60.00%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDD 60
           M NS+RCC++C+LPCGALD+IRIVH NGYVEEI+ SI A ++++A+P HVL KP S    
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQ--- 60

Query: 61  DDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKRDHVNNNNHNNNAT 120
                V KI+I+ PE++L+RG IYFL+P    P+K R R  + R+K+   N  N + +A 
Sbjct: 61  ---GVVRKILILSPESELKRGSIYFLIPDSSLPEKKRRRKDTPRRKK---NLQNPSADAA 120

Query: 121 HHSAAVDSNAISMTNLLVSDQYLSEILSEKAS--THHCERRRGR---VGVWRPHLQSICE 176
                 D   + +      ++YL E++S  ++   H   RR  R   V  WRP L SI E
Sbjct: 121 GREIKGDEECVKL-----CEKYLEEVVSSASTGKEHRHRRRHSRSASVSTWRPLLDSISE 166

[Close]

BLAST of Sed0005326 vs. TAIR 10
Match: AT2G30230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 7.1e-29
Identity = 71/180 (39.44%), Postives = 108/180 (60.00%), Query Frame = 0


Query: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDD 60
           M NS+RCC++C+LPCGALD+IRIVH NG+V+EI+  + A ++++A+P HVL KP S    
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCSQ--- 60

Query: 61  DDPTTVPKIVIVPPEADLQRGKIYFLMP--LPPNPDKARSRSSSRRKKRDHVNNNNHNNN 120
                V KI+I+ PE++L+RG IYFL+P    P   K + R   R +K+   + N+ N++
Sbjct: 61  ---GVVRKILILSPESELKRGSIYFLIPDTSMPEKKKTKKRKELRCRKKPLESGNDINSD 120

Query: 121 ATHHSAAVDSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGR---VGVWRPHLQSICE 176
               +  +D + +++    + D  LSE +S     +   R+  R   V  WRPHL SI E
Sbjct: 121 HVSTNKDLDGHCLTLCEKYLEDVMLSEKMSSAGKENRHRRKHSRSASVSTWRPHLDSITE 174

The following BLAST results are available for this feature:

BLAST of Sed0005326 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583958.1	5.9e-70	76.73	hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019577.1	1.3e-69	75.61	hypothetical protein SDJN02_18538, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023519997.1	2.1e-67	75.38	uncharacterized protein LOC111783307, partial [Cucurbita pepo subsp. pepo]	[more]
XP_023001645.1	2.8e-67	74.51	rhoGEF domain-containing protein gxcI-like [Cucurbita maxima]	[more]
KGN65978.2	8.9e-66	76.88	hypothetical protein Csa_019723 [Cucumis sativus]	[more]

BLAST of Sed0005326 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005326 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLR7	1.3e-67	74.51	rhoGEF domain-containing protein gxcI-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0M094	4.3e-66	76.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G471460 PE=4 SV=1	[more]
A0A5A7UMG1	1.3e-65	75.66	DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3B8G2	1.3e-65	75.66	uncharacterized protein LOC103486913 OS=Cucumis melo OX=3656 GN=LOC103486913 PE=...	[more]
F6HM99	6.4e-62	71.35	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g01310 PE=4 SV=...	[more]

BLAST of Sed0005326 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29195.1	1.6e-44	56.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G06980.1	4.2e-29	42.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G30230.1	7.1e-29	39.44	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 6..175 e-value: 1.1E-33 score: 117.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..121
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 1..178
None	No IPR available	PANTHER	PTHR33052:SF3	OS01G0758500 PROTEIN	coord: 1..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005326.1	Sed0005326.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003723	RNA binding