Sed0005276 (gene) Chayote v1

Overview


Name	Sed0005276
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transcription initiation factor IIA subunit 1
Location	LG01: 6213999 .. 6223789 (-)
RNA-Seq Expression	Sed0005276
Synteny	Sed0005276

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCGCTTCTCTCTCCTCTCTCTTTCCCCTTCTCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTCGTCTTTTCTCTACCCTTTTACTTCACACAACTCCACAAAATTCAAGAAAGCTCATACGGGATCACATAGATCTTCTTTCTTGATTTTTCTCTCCAATTTTCTTGGACAGTTGATTCTAGGTTTCGCCAGTTGACGGAATCGCGAATCGGGCGTAGACACAGCCAGGCGGATCCGTTATGGCGATTTCGACGAGCTCTATCTACATCAATGTCATCGAAGATGTCGTCAACAAGCTTCGCGAAGAGTTCGTTGATAATGGCCCTGGAGAGGACGTTCTCAAGGAGCTTCAAGGAGTAATTATTGATATCCAATTTTGAAATTCTCTACTGAAATCAACATTTGTTTTTCTGTTTTTTATAATCTATTTCAAGGAATCGATTCAATTTTTTTTCTGGGGTTGATTCGATTCTTTCTAGGGTTTTGAGGCTTTGAAGCTAATTTAAGCTGTCGTTGGGCTGATCTTTGTAGATGTGGGAGGCGAAAATGATGCAAGCGGGTGCGGTAACCGGTCCGATAGAGAGGTCTGCGCTATCTAAGCCCACTCCTGGAGGTCCTATCACTCCGGTTCACGATCTCAATGTTCCGTACGAAGGGACTGAAGAGTATGAAACTCCCACGGCTGATATGCTCTTCCCGCCTGTGAGTTGTTCTTCTGTTTCTTGTACTTAATGTTCTTCTTAGTAATTTAATAATCGAAGCAAATTTTGGAAATTGTAGACGCCATTACAAACTCCAATTCAAACCCCTTTACCTGGAACTGCTGACAATGGGATGTATAATATTCCTACTGGACTCAGTGACCACTCTGCATCTGGAACTGATGCTTCTCCAGCTGCTGCCACTCCTGGAGGTAGCGCTAATAATGTCGGTGAGGTTAGACCTGGAAGGCCGACCCCGTATATGGTAATTACTGCTCGACTCCACTGCTACTCTTTACATTTTCTTCAAAAATGCTTCTCCAGTTTATCCACACCATACTGTCATGATTGCATTATTTTCTTCAAAAAGGAAGGGTAATATGAAGTCCCTTGATTTACAAGTTCAATGTCTCCATTCCTTCAATATCTCTTGGTACCTGGCCTAGGGGCGAGCATGATTATTCTCGGTATAGTTGAGTGAGTCTCCATTTTCCCGGTTTCCAAAATAAAAAATGTAGTCCCTTAATTTGATTTCAAGTGTTGCATTAATATGAGTTCTACCATCAATATTTTAAAGTATGCTGTTGATAGTTACATGCTATTAATTTTGGTATTTGATAAACGTTCACATTCTTGTTTGTTGTTTCAGCAACCACCTTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGGTAAGTTTAGTGTTGAAGCAGTGAAAAACTTTTCACACCAAAATTCTGCGGTAATATATATTGATTGCAATTGCAATTGTAGCCTATGAGGAGGGGCGTGATGAAACAGACAGGGGAGCTGCTCATTCATCCCTCACACAGGTAACTTTTTTCTTGATTCGTGCTTCCGTCATGAAAAAGATTGTTGCCTGATGTGTAACCCAAAACTCTACTGTGAATTTCATCTGTATCAGTTCCAATTTCAAATAATGCTACTCCTTTCCGTCTTGTATGTATCAGCACAAAACTTCGATATGATGTTTTAACCTGGGGAAACAATTTTCAGGACTTTTTGATGATGAATTCTGGGAAGCGTAAGCGTGATGATTTTGCTTCCCAATACCAGACTAATGGGTTTATACCACAGCAAGATGGAGCTGGAGATGCTTCTAATAGTGTCTTTGAGATTGAGGTTTTGTTTCCTTACCTATTGTCAATGCTCTAGAAGATTCTTTCTAGCCTCGGACTTGTATGCCAACTTTCTTTCGAAAATTTCTGTTCATAGTCTTGTGGGAGTGCGTGTTAGTATTAGAAAACTTTTTTCTGTTTGTTGTCTTGCAAAAACAATTTAGGGAACTTTTATTAAAACCTTTTAAAGACACACACACATATATTCTGGTTTAAGTGTACAGAGTACACGATATAAAATTAATATTTGAGGTGGAAACTTCTACTCTGCTATTTTCCAACGCTATCAGAGACCACACAATAACTCAAAAATGTTCCACCATGGAGGGGAGAGTGACAATTTCACATTCTAGCTCTTTTATACATCCATTTCGCTTTATGTCAATAGAAAAATCATAAACTATTTGTGAAGCCTAGTCTTTTTTTTACAAGCCGATTCTAATTTTTCTATGCCCTCATAAGTGGATTTTTTGGGAGAACTTCATATTTTCATTTCTTTGAAATCCCTGGCTTGAAAGAGATGTCCGGGTTTTCTCAGACAAGTTTCAGAACACACATTCCTTCGCAGTAAACATTTACCGTGCTTTATCTTGGAGTTATTCATCCCCTCCATTTTGTAACCATAGTTTAACTAATCTTCTATCTCATTGGAGAGCTTTTATGTAATTACCATAGATTGTATTTTTTTCTATCTATTTCATATATCAATGTAATGGTTTTTCTTTGTTTCCTATAAAAAATGAAAATAAAATCATCAAACCCCCCCTTCAATTGCCAATGATTCTCTTCAATACTTACTCTTCCTAACCTAGGGGTGCAAATGATGAACTCCAAGTCATCCCTTAACAGAACTATCTGACTAACTTCCTTATCTAGCAACAGATTTAACTACCTTTATTCACTAGCTGGCATCTGCTGCCTTGGATATGTAACGTGAACTGGAGGCTTTTAAAAATTAAAATCACTTTTTTTTTATCGGAAACAGTAACTCTCATTGATGGATGAAAAATTACAATAAAGCAATCGATATAGTTACAATAGATGATGCCATTGGGCAAATAAAAAAGATAAGTCATAGTTACAAAAAGGAGGAATCCTATGATACTAATTAATTCCAGCATGTATAGTAGTTTCAATGATGGTGGGGAGAGTGACTGATGTATCATTAAAAATTCTGTTGTTTCTTTCACCCCACCATTTCCAAAAGAATGCATAAATCAAATTCAACCATAGAGTTTCTTTTGTGTTCTTGAATGGATGCCCAACCATGATGCAGAGGAGAAAAGATCCAATATTTTGAGGACGTACAAATGACCATCCAAATAAACCAAACAGTTGATTCTAGTACATCTCGGCCCAATGATAGTGAATGAAAATGTGGTCTTGAGATTCTTCCCCATTATAACACAAGCAACAACAGCTAGGAGATGAAAAAAATCTCGGCATCTTTCTTTTAAGAATTTCATGAGTATTTATAGCTCTATGGGCGATTTCCCACATAAGAAACTTTACCTTTTTAGGCTGTTGTCCCTTCCATAGGTTTGAGAATAATGCACCTTGATCATTCGTGGTGGGCTGATATTGCACAGTAGAGATCGTCTTCATTAATGATTTTGAAGAAAAGGTACCATTGATTTCAAGCTTCCATCTCCATTCATCACAGGAATCATTGAGGATAGTATTATCCAATTTAAGAGATAAATCAGCCCATTCAATGATCTCCGACTCCGTGAGGTTTCTTCTAAGAGAGAGATCCCAGTTGGTGGATGTTTGGGACCAAAAATCAGCAATCGTCCGATTCTTTTTCAAAGATAGATGATGCAGCAAAGAATAGGCCTCTTTGAGGCCTCTTGAACCCATCCAAATGTCTTCCCAAAAAAGACTGTTCCTGCCATTACCCACCTTGTGCTCAATATTGTTGATGACAAGATTGCTAACTTTTTCAATAGACTTCCAAGGACCCTTAGATAGGTGAAGATTTCTTTTACCCGGAATGCACAGATTATCTGGGGTCCCATATTTATTTTTAATCATCATCCTCCATAAAGCACTTTCCTCTTTAGCATATCTCCAAGACCATTTGGCAAGCAAAACATCATTTTTATCACTTCAAACTCAAAACTGTAGATGCTGACCTTATTTTCTCTTAAACTTCGAACTTTTATCATTTGGCTAGACTCTGAGAGCCATAATCTAGGAAGTCAAGTCCTAGGGTGGTTCTGAGCTCAAAATGTTTATTTGATTCAGATCTAATTTACAAGTAGAACTAGGGTTTCCCATTTAGTTGGCTAGCTAAGAAACACGTACACGTACATGGACACAAGATACGGACACGAAGCAACGCCATTATTTAAAAATGTAGAACACGGATACATTAGGGACACATTATTTATTAATATTTTTTATGATATATTATGAAAAGATCAAATCCAAAATATTTTAGTTTTTTTTTATTAACTGCGAAAAATAATTAAAATAAAGATGAACATGAAAATTCAATTAGCATTTGAATTTAACCTATATAATTAGTTATATGAGTCCATTTAATGGTGTGTCCATGAAGTGTACATGGTGTGTCCATGAAGTCTCCATCTGTGCAAAATTATAAATAATAATAATAATAATAAAGGAGAACTCGGAATTTTGACTGTTGGACACGTGCCCGAAGAGCATTCGGAAGTATTGGTGTCGTACATGCCAATCAAAGTGTCTGTCTTGCCTAGTTGGCTAGAGGTCACTCCTCTTAGGTGTCTGCTTTAGAGCAACTATTTGTAAAGGCTACACTATGGTCCTCTGGCATTTGGATTCTCAATGGAGTTGTCTATCTTTTCTAACTATGAGAACCCCTACCCCTCCAAGCGCCAAAAGTTATGAAGCATGGTCACAAACTATGAAGCATCGACACGGACACGGATATAGACTCGACAGGATAGGGCGATACGCCATTTTCTAAATAGCTAGGGCACGAATACGTCAATTTTTTTTAGTAAATATGTGAATTTAGCATAACATACTAAATGTATTTAACTAAAAAGCATATAATGTCAAGTTAATTACAATGGACGTCGGTTAGACATGTTGCATGGGAGGTGGCGGCAAACGAGTATTTAGAAGATGAAGGATTTTTTTCATGAGGGAGAGGAAAGGATGTTGGTTTCTTGTGATAAATGAGAACATTTTTGTTTTTCCTTTTCTTTTTCTGTTACCTTTCCCTTTTTATTTTTTCAGTTAACTAGAAAAATAATTATTTTGTGTTTGAGCTTTTAACATTGGGACTCAAAGACCACACATGTTTACAAGATGTGACTAACGTATGTCCGAAGTGTGTCCGATTATTAAAAAAATAAGGATATTCAAAATGGTGTGTCGAACACGTGTCCGAGAAGTGTCTAGAAGAATGCATGTCCAATACTTGTTTGATTAATAATGCTTATGTGTACTTAAATGCAATTAGTTTAGAATTTTCAAAGATTTCTGTTACACCTTGTCCTATACTTGTTTAAAAGCTTTCTGTTGGAGCATCTGGTTAGAAAGGAATCGTAGAATTTTCAAAGATTTAGTTACACCTTTTGAGTGCTTCATTGATAATATCACATATATGGTGGTATCATGGTGTAAACTTTCTCCGCTTTTTCATGATTACAGCTTCGGTTCCCTTGTTAATAGTTAGAGATCCTTATTATAGATGGATTGTCCTTATTTTGTAATCCTTTACTTTCATACATCTAATGAAATTGTTTCTTATCCAAAAAAAAAAAAATGCAATTAGTTTCTCTTTTCATTTATGCTGATTGTATGTTTCCTATTCTGCTGCTGAAGCTTCTAAGAGTACTTTCTTGAGCTTGTTTGACAATTTTTAAAATTGAACTGTTAATAGTTATGAATTAATAGAACTCACGTGATTGCATTTTTCTGAATGCTTTTGTTAATTGTGATCAGTCTTTGAAACTCCTTAGTGGTAAGCTTCTGCAGATAAGTGGATCCAATGCTTCTGATGGGAGAAGCTTTATCACTTCTGCAAACAGTGCAGTGTCATCACACATTGCAAGATCATTATTGAAGATTCCTCAACTTGATGGACCAATACCTGATCCATATGATGTTGAGCTTTCAACACCCAATGTTAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCTTAAAGTTATAGAAGTGTGTGTCCTTAAAGCGATGGAATATTTGTATATTAGTAATTGAAATTTGATACTTTTACCTTCTTGTTATCTTTTTTCATTGCCCTCAGAAGGTTACTTGTCTGGCGTTGTCTTTTGATTTTCCTTTTTCACATTTTTGTAGTAGTTAGGAATCTTTTCCATGTACTCTTATAGGGATATCCTTAGTCACATAGATTGCTACTGAATACCAATAGTACAAAGCTTCATAAAGCTAGGTACAAAGCACAAACTTGTCATGGACTTAACTGAAGCAAGAGATTGTTTGGAAAAATTAGACCCTTTTTAATGCAAGCAAATTAAAACATATTGAATTGCATGCAGTCAGAAATAAACAGGAATACACAAAATAATGGTAAAACGTCAACTGTATGAAACAAATGTGTTCCGCCTAAGAATTTTTCTTGTGTAAAAAAGGCCTTGGGGAACTAAGTGAAAATGTGTTCGGTCCATGGTGGTTATTTACCTAAGATTAAATATTTTGTGTTCCAGGTCAACCAAATGTAGTAGGGTCTGATGGATATCTGATGACATTAGTCCTAGCTGAGACATGCACCCATATAAAAAATAAAATTCCTTGAGTGCATTTAATTATTAGTTAATTAATATTAGAGCTTAGGAAGGTGTTTGACTTTTGATGCTGATGGAAAACAAAACATCATTCAAATAAATATCAAGATTCTGAGTTGACTAAAATAATAAGCAAGAATACGACTTCGTGATCCTCTTTTCTGTGTCTCTGTATTACAGATACGATATTAACGCTAAATTAGCTATTTGAAAGATGCTTATTTAAGTATTGCTATTAAACGGCAACAAATATGCTTCATTCTGTTACTTTGGGTTAAAGGCGGTAATAAATAAATATTCCCTCTAGTTGGTTTTAAGTAAAGAAACAATATTATAGCTCAGAGATCGAATCCTAATCAACCTGCACATTTCAGTATTTTGGAAGTGCGTTAGCTCTTCCATACTTGATGATAGTCCTAGTGGTCAAATAAGGGTCTTTTAAATCGTTAGGTGCTTACTGCGTAGAGGTTATGGATTTAATCTATGGTGGTCACTGGTCACTACTTAGGAATTAATTTTCTACGAGCTATTTACTCAACCAAATGTATTAGGTTTAGGTGGCTTTCCCGAGAGAATAATGAAGGTCCGTATAGGCTGATCCAGACATTCATAGATATAAAAAAAAACAACGAAAATAGAGGTCTTCCACATTTTCCTTGGTCTTGTCAAGCTTTTTCACTGTTTGTGGTCAAAGCCAATGAATTCTTTCACTTTATAGTCGCAATTAATTACATGTAACATGGGATTTCTTAGCTAGCTGTATTGGATTTGCTCTGGGAGTTTAACAATTGCTTGATTCTTCTCGAGTGTGTTGTGTTCATCCTATGTTTTTCTTGAGTTGATTTTTTTATGCAATAAGATGGGATACTTTTTTGTGATTTGAATCCTCTATATTATTATAAACGAAGATCATTCCTATTATCTCTTTCCACTGAGTTTGCCTTTTGTTTTATCTTTCCACAAAACTTAATCAACATTTCTGACATCCCCTGCAGATATACAATTACCAGGGTGCCTATAATGAAGACTACAACATAGCAAATACACCAGCACCTAATGGTAAATCTTGCTATGGTGTCTTGATGATTGTGGTTGTTTATGGAAACGATGGAAATCTGGTTTTTTATTATCGTTAGAGAAAGATATTAAATGAAAGATTCAATTTCGGTTTATAATTTTCATATCTAAATATTTTGGCTTGGTCCCTAAGTTTTCATGATTGTCATACCTTTTCATAACTTTGATAGCAGGTTTAAAGCATTAACTTGCTGGGTGCCGTGTAATGTAATTCAACTTTGATCATCGTGGATTGACCTAGTCAAATAAGGGCCTTAGAAATTTAGAAATTATGAGTTCAATCCATGGTGGATAATTTTCAACAAGTTTTCTTGACAACCAAATATAATAGTGGTTGAGATATGCTTTGAATGCACCATTGTCCTGCTATTAGTAGTCAAATAAGGGCCTTAGGAATCTAGAAACTATGAGTTCATTCCACATGCGTTTAGCGCCAGTACTTCCGCACTATGTTGTGTGTTCTGCGTGTGCTAGTGCATCTGCATTATGTTTAATGCTTATGCATTCTGTAATAGGATTTAATGAGAGTGCCTATATAAACTCGAATTAAACCCTAGTCGTATTATGACGTTCATTCTGTAACTTTGTAATTTGTCTCTCCTTAATAAAAATGTTCTCTCTCTCTGCCCGTGGACTGGCTAACACTACGGTAGTGAACCACGTGAATCTGCGTGTATTATTATTTTTTCTTCTTTTGTATTTATCGTTATCTGTTTTCATATCTTCGTATCGATTGTTAATTGTCGTTTTCATAACAATAATAGTTGTCGTGTTGAAATATTAGAGGTGTGCACAAGCTGGTCTAAACACTCACCATATATAGATATACACATAATGACCCCAATAGTACATTTGAAGGGATAAAATAAGTAGAGCAGAAGAATTCCTAAAGAGAATTTGAAGTCAAAACAGAAGTTCTTTCTAATTTTAATATGTTGCCTTTTATTTCGTCTCGACAGATCCCCCAGCTGGCACTCCTGCTGTTGTCATTCAAGATGATGTCGTTGATGAGGAGGATAGTGAGCCTTCATTGAATGAAGACGATGATGACGACGATTTGGATGATGTGGATCAAGGAGAGGAATTGAGCACACAGCATTTAGTCTTAGCTCAGTTTGATAAGGTACGTCTTTACTCCTGGTTGGTAGGTGCGAGCTGCACATATGCTTGAGCATTTTCAGAAGAGAAATACTTGCCTCCTTATTCATAAGGAGGAGGCAAGCTCTCCTGAAGGATGTATATGGCACTAACATTGGCACAAAATTTTTCTTTAATCAATATTAAGAAGTAAAAGTGAAAAATAAAAATTTTGTGAAACCAAATAATGTCACATGTACCTTTATTAGAGGGGTTACCTCCTTATGAATAAATAGGCAAGTATTTCTCTTTTTAGAATTGCATATACATACCATTAAATATTTGATTTTTTATTCTTGGAATAATTTTTTATATATATATGAAACAAAAAGTTTTGCTCATTAGTAAAATAAGTTACGGAAATTTTTTCGAAATAATTATAAAAAACATATTCTTTGAATATAATGCATAATAAAATACTTGCCATATGATAATTGTTTTTATGTTGTAGGTTACTCGTACGAAGAGTAGATGGAAATGTACACTGAAGGATGGAATTATGCATATTGACAACAAGGACATTCTCTTCAACAAGGTGAATTCCTCCTTCCCCAACTACTAGTTAGATGTTAACCGACTTCGGTTTTCATGGAAGCTTGTTTGTTTGGCAGGCGACTGGGGAATTCGACTTCTGATTTTTAGCGGAGGCATATTCATCGGGCCGTTATCAGTAGCAGCATTTTGAAAGTATTCCAGGAAGTTCAAGTTGTTCGTTCCTTGGGTGTTTTAGTCGTCTCGAGTTAAATATTTTGGGAACTCAGGAGGGTGAAGAACATGTTTGATTCCTTATGATAATTTTGATGAATGTTATTATTAGCGTTTTGTATATAACGAATGAGAGCTCTTTTGGCCTCTAATGCATGCCAACATGAGGATTTTTGACAAACTTTATCATTTCTCTAGTGAAATATATATGTACGTAACTTCAACTCACTTTACTGTGAACTTTTCCCTTTTCGCGTG

mRNA sequence

GTCCGCTTCTCTCTCCTCTCTCTTTCCCCTTCTCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTCGTCTTTTCTCTACCCTTTTACTTCACACAACTCCACAAAATTCAAGAAAGCTCATACGGGATCACATAGATCTTCTTTCTTGATTTTTCTCTCCAATTTTCTTGGACAGTTGATTCTAGGTTTCGCCAGTTGACGGAATCGCGAATCGGGCGTAGACACAGCCAGGCGGATCCGTTATGGCGATTTCGACGAGCTCTATCTACATCAATGTCATCGAAGATGTCGTCAACAAGCTTCGCGAAGAGTTCGTTGATAATGGCCCTGGAGAGGACGTTCTCAAGGAGCTTCAAGGAATGTGGGAGGCGAAAATGATGCAAGCGGGTGCGGTAACCGGTCCGATAGAGAGGTCTGCGCTATCTAAGCCCACTCCTGGAGGTCCTATCACTCCGGTTCACGATCTCAATGTTCCGTACGAAGGGACTGAAGAGTATGAAACTCCCACGGCTGATATGCTCTTCCCGCCTACGCCATTACAAACTCCAATTCAAACCCCTTTACCTGGAACTGCTGACAATGGGATGTATAATATTCCTACTGGACTCAGTGACCACTCTGCATCTGGAACTGATGCTTCTCCAGCTGCTGCCACTCCTGGAGGTAGCGCTAATAATGTCGGTGAGGTTAGACCTGGAAGGCCGACCCCGTATATGCAACCACCTTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGCCTATGAGGAGGGGCGTGATGAAACAGACAGGGGAGCTGCTCATTCATCCCTCACACAGGACTTTTTGATGATGAATTCTGGGAAGCGTAAGCGTGATGATTTTGCTTCCCAATACCAGACTAATGGGTTTATACCACAGCAAGATGGAGCTGGAGATGCTTCTAATAGTGTCTTTGAGATTGAGATAAGTGGATCCAATGCTTCTGATGGGAGAAGCTTTATCACTTCTGCAAACAGTGCAGTGTCATCACACATTGCAAGATCATTATTGAAGATTCCTCAACTTGATGGACCAATACCTGATCCATATGATGTTGAGCTTTCAACACCCAATATATACAATTACCAGGGTGCCTATAATGAAGACTACAACATAGCAAATACACCAGCACCTAATGATCCCCCAGCTGGCACTCCTGCTGTTGTCATTCAAGATGATGTCGTTGATGAGGAGGATAGTGAGCCTTCATTGAATGAAGACGATGATGACGACGATTTGGATGATGTGGATCAAGGAGAGGAATTGAGCACACAGCATTTAGTCTTAGCTCAGTTTGATAAGGTTACTCGTACGAAGAGTAGATGGAAATGTACACTGAAGGATGGAATTATGCATATTGACAACAAGGACATTCTCTTCAACAAGGCGACTGGGGAATTCGACTTCTGATTTTTAGCGGAGGCATATTCATCGGGCCGTTATCAGTAGCAGCATTTTGAAAGTATTCCAGGAAGTTCAAGTTGTTCGTTCCTTGGGTGTTTTAGTCGTCTCGAGTTAAATATTTTGGGAACTCAGGAGGGTGAAGAACATGTTTGATTCCTTATGATAATTTTGATGAATGTTATTATTAGCGTTTTGTATATAACGAATGAGAGCTCTTTTGGCCTCTAATGCATGCCAACATGAGGATTTTTGACAAACTTTATCATTTCTCTAGTGAAATATATATGTACGTAACTTCAACTCACTTTACTGTGAACTTTTCCCTTTTCGCGTG

Coding sequence (CDS)

ATGGCGATTTCGACGAGCTCTATCTACATCAATGTCATCGAAGATGTCGTCAACAAGCTTCGCGAAGAGTTCGTTGATAATGGCCCTGGAGAGGACGTTCTCAAGGAGCTTCAAGGAATGTGGGAGGCGAAAATGATGCAAGCGGGTGCGGTAACCGGTCCGATAGAGAGGTCTGCGCTATCTAAGCCCACTCCTGGAGGTCCTATCACTCCGGTTCACGATCTCAATGTTCCGTACGAAGGGACTGAAGAGTATGAAACTCCCACGGCTGATATGCTCTTCCCGCCTACGCCATTACAAACTCCAATTCAAACCCCTTTACCTGGAACTGCTGACAATGGGATGTATAATATTCCTACTGGACTCAGTGACCACTCTGCATCTGGAACTGATGCTTCTCCAGCTGCTGCCACTCCTGGAGGTAGCGCTAATAATGTCGGTGAGGTTAGACCTGGAAGGCCGACCCCGTATATGCAACCACCTTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGCCTATGAGGAGGGGCGTGATGAAACAGACAGGGGAGCTGCTCATTCATCCCTCACACAGGACTTTTTGATGATGAATTCTGGGAAGCGTAAGCGTGATGATTTTGCTTCCCAATACCAGACTAATGGGTTTATACCACAGCAAGATGGAGCTGGAGATGCTTCTAATAGTGTCTTTGAGATTGAGATAAGTGGATCCAATGCTTCTGATGGGAGAAGCTTTATCACTTCTGCAAACAGTGCAGTGTCATCACACATTGCAAGATCATTATTGAAGATTCCTCAACTTGATGGACCAATACCTGATCCATATGATGTTGAGCTTTCAACACCCAATATATACAATTACCAGGGTGCCTATAATGAAGACTACAACATAGCAAATACACCAGCACCTAATGATCCCCCAGCTGGCACTCCTGCTGTTGTCATTCAAGATGATGTCGTTGATGAGGAGGATAGTGAGCCTTCATTGAATGAAGACGATGATGACGACGATTTGGATGATGTGGATCAAGGAGAGGAATTGAGCACACAGCATTTAGTCTTAGCTCAGTTTGATAAGGTTACTCGTACGAAGAGTAGATGGAAATGTACACTGAAGGATGGAATTATGCATATTGACAACAAGGACATTCTCTTCAACAAGGCGACTGGGGAATTCGACTTCTGA

Protein sequence

MAISTSSIYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSALSKPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADNGMYNIPTGLSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNIAYEEGRDETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEISGSNASDGRSFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNEDYNIANTPAPNDPPAGTPAVVIQDDVVDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF

Homology

[Close]

BLAST of Sed0005276 vs. NCBI nr
Match: XP_022946939.1 (transcription initiation factor IIA subunit 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 704.1 bits (1816), Expect = 6.7e-199
Identity = 361/399 (90.48%), Postives = 374/399 (93.73%), Query Frame = 0


Query: 1   MAISTSSIYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAL 60
           M  STSSIYINVIEDV+NKLR EFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSA 
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTAD+LFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GLSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNIAYEEGR 180
           G SDHSASGTDASPAA TPGGSANNV +VR GRPTP+MQPPSWMGQRTPVDVNIAY EGR
Sbjct: 121 GPSDHSASGTDASPAATTPGGSANNV-DVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEISGS 240
           +ETDRGAAH SLTQDF  MN+GKRKRDDFASQYQT+GFIPQQDGA DA NSVFEIEISG 
Sbjct: 181 EETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADNSVFEIEISGC 240

Query: 241 NASDG-RSFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNEDYN 300
           NASDG   F TSAN+A SS IARSLLKIPQLDGP+PDPYD ELSTPNIYNYQG +NEDYN
Sbjct: 241 NASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYN 300

Query: 301 IANTPAPNDPPAGTPAVVIQDDV-VDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360
           IANTPAPNDPPAGTPAVV+QDDV  +EEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA
Sbjct: 301 IANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360

Query: 361 QFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           QFDKVTRTKSRWKCTLKDGIMHI+NKDILFNKATGEFDF
Sbjct: 361 QFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Sed0005276 vs. NCBI nr
Match: XP_023007009.1 (transcription initiation factor IIA subunit 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 703.7 bits (1815), Expect = 8.7e-199
Identity = 360/399 (90.23%), Postives = 373/399 (93.48%), Query Frame = 0


Query: 1   MAISTSSIYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAL 60
           M  STSSIYINVIEDV+NKLR EFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSA 
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTAD+LFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GLSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNIAYEEGR 180
           G SDHSASGTDASPAA TPGGS NNV +VR GRPTP+MQPPSWMGQRTPVDVNIAY EGR
Sbjct: 121 GPSDHSASGTDASPAATTPGGSTNNV-DVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEISGS 240
           +ETDRGAAH SLTQDF  MN+GKRKRDDFASQYQT+GFIPQQDGA DA NSVFEIEISG 
Sbjct: 181 EETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADNSVFEIEISGC 240

Query: 241 NASDG-RSFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNEDYN 300
           NASDG   F TSAN+  SSHIARSLLKIPQLDGP+PDPYD ELSTPNIYNYQG +NEDYN
Sbjct: 241 NASDGIPDFSTSANNETSSHIARSLLKIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYN 300

Query: 301 IANTPAPNDPPAGTPAVVIQDDV-VDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360
           IANTPAPNDPPAGTPAVV+QDDV  +EEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA
Sbjct: 301 IANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360

Query: 361 QFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           QFDKVTRTKSRWKCTLKDGIMHI+NKDILFNKATGEFDF
Sbjct: 361 QFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Sed0005276 vs. NCBI nr
Match: XP_023532247.1 (transcription initiation factor IIA subunit 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 702.2 bits (1811), Expect = 2.5e-198
Identity = 360/399 (90.23%), Postives = 374/399 (93.73%), Query Frame = 0


Query: 1   MAISTSSIYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAL 60
           M  STSSIYINVIEDV+NKLR EFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSA 
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTAD+LFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GLSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNIAYEEGR 180
           G SDHSASGTDASPAA TPGGSANNV +VR GRPTP+MQPPSWMGQRTPVDVNIAY EGR
Sbjct: 121 GPSDHSASGTDASPAATTPGGSANNV-DVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEISGS 240
           +ETDRGAAH SLTQDF  MN+GKRKRDDFASQYQT+GFIPQQDGA DA +SVFEIEISG 
Sbjct: 181 EETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADSSVFEIEISGC 240

Query: 241 NASDG-RSFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNEDYN 300
           NASDG   F TSAN+A SS IARSLLKIPQLDGP+PDPYD ELSTPNIYNYQG +NEDYN
Sbjct: 241 NASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYN 300

Query: 301 IANTPAPNDPPAGTPAVVIQDDV-VDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360
           IANTPAPNDPPAGTPAVV+QDDV  +EEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA
Sbjct: 301 IANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360

Query: 361 QFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           QFDKVTRTKSRWKCTLKDGIMHI+NKDILFNKATGEFDF
Sbjct: 361 QFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Sed0005276 vs. NCBI nr
Match: XP_038901376.1 (transcription initiation factor IIA subunit 1-like [Benincasa hispida])

HSP 1 Score: 700.7 bits (1807), Expect = 7.4e-198
Identity = 362/401 (90.27%), Postives = 368/401 (91.77%), Query Frame = 0


Query: 1   MAISTSSIYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAL 60
           MA STSSIYINVIEDV+NKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSA 
Sbjct: 1   MATSTSSIYINVIEDVINKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTAD+LFPPTPLQTPIQTPLPGTADN MYNIPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNIPT 120

Query: 121 GLSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNIAYEEGR 180
           G SDHSASGTDASPAA TPGGS NN  EVR GRPTPYMQPPSWMGQRTPVDVNIAY EGR
Sbjct: 121 GPSDHSASGTDASPAATTPGGSTNNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DETDRGA--AHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEIS 240
           DE DRGA  AH SLTQDF MMNSGKRKRDDFASQYQ NGFIPQQDGAGDA NSVFEIEIS
Sbjct: 181 DEPDRGATGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAVNSVFEIEIS 240

Query: 241 GSNASDGR-SFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNED 300
           G NASDGR  FITSA S  SSHI RSLLKIPQLDGP+PDPYD  LSTPNIYNYQG +NED
Sbjct: 241 GCNASDGRPGFITSAKSPTSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300

Query: 301 YNIANTPAPNDPPAGTPAVVIQDDV-VDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLV 360
           YNIANTPAPNDPP  TPAVV QDDV  +EED EPSLNEDDDDDDLDDVDQGEELSTQHLV
Sbjct: 301 YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV 360

Query: 361 LAQFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           LAQFDKVTRTKSRWKCTLKDGIMHI+NKDILFNKATGEFDF
Sbjct: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 401

[Close]

BLAST of Sed0005276 vs. NCBI nr
Match: KAG6605439.1 (hypothetical protein SDJN03_02756, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 699.9 bits (1805), Expect = 1.3e-197
Identity = 359/399 (89.97%), Postives = 372/399 (93.23%), Query Frame = 0


Query: 1   MAISTSSIYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAL 60
           M  STSSIYINVIEDV+NKLR EFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSA 
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
            KPTPGGPITPVHDLNVPYEGTEEYETPTAD+LFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  PKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GLSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNIAYEEGR 180
           G SDHSASGTDASPAA TPGGSANNV +VR GRPTP+MQPPSWMGQRTPVDVNIAY EGR
Sbjct: 121 GPSDHSASGTDASPAATTPGGSANNV-DVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEISGS 240
           +ETDRGAAH SLTQDF  MN+GKRKRDDFASQYQT+GFIPQQDGA DA NSVFEIEISG 
Sbjct: 181 EETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADNSVFEIEISGC 240

Query: 241 NASDG-RSFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNEDYN 300
           NASDG   F TSAN+A S  IARSLLKIPQLDGP+PDPYD ELSTPNIYNYQG +NEDYN
Sbjct: 241 NASDGIPDFSTSANNATSLRIARSLLKIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYN 300

Query: 301 IANTPAPNDPPAGTPAVVIQDDV-VDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360
           IANTPAPNDPPAGTPAVV+QDDV  +EEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA
Sbjct: 301 IANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360

Query: 361 QFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           QFDKVTRTKSRWKCTLKDGIMHI+NKDILFNKATGEFDF
Sbjct: 361 QFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Sed0005276 vs. ExPASy Swiss-Prot
Match: Q9USU9 (Transcription initiation factor IIA large subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa1 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-13
Identity = 106/422 (25.12%), Postives = 169/422 (40.05%), Query Frame = 0


Query: 8   IYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSALSKPTPGG 67
           +Y +VI DV+   R +F +NG  +  L+ELQ +W++K++     T P  ++      P G
Sbjct: 9   VYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDVATFPWAQA------PVG 68

Query: 68  PITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADNGMYNIPTGLSDHSA 127
              P+  L  P  G     T + D+   P    +PI   +   A   +  + T    H  
Sbjct: 69  TF-PIGQLFDPVSG---LRTDSLDVT-APAVANSPILNNI--AAIRAVQQMDTFAQQHGN 128

Query: 128 SGTDASPAAATPGGSAN---------NVGEVRPGRPTPYMQPPSWMGQRTPVDVN----- 187
           S   + P  + P  + N         NV +  P    P+   PS+      +  N     
Sbjct: 129 SNYYSPPTPSLPQSATNISFDSSAIPNV-QSNPNNTAPF---PSYSSNSLQLPTNQTADS 188

Query: 188 --IAYEEGRDETDRGAAH---SSLTQDF---LMMNSGKRKRDDFASQYQTN-------GF 247
             I      + T  G  H   SS T  F   L+ N    K+ +      +N         
Sbjct: 189 PIINDHSTANVTSTGQEHAPDSSSTNSFGGLLLPNQNSPKKSELGETESSNTTPANSRND 248

Query: 248 IPQQDGAGDASNSVFEIEISGSNAS-DGRSFITSANSAVSSHIARSLLKIPQLDGPIPDP 307
           +PQ DGA      + +++ +GS ++ +   F  +  +    +      +I Q+DG I D 
Sbjct: 249 VPQTDGA------IHDLDDAGSPSNFESNRFAIAQKADAEIYEVLKKNRILQIDGTIED- 308

Query: 308 YDVELSTPNIYNYQGAYNEDYNIANTPAPNDPPAGTPAVVIQDDVVDEEDSEPSLNEDDD 367
                            NED           PP  TP             S+ ++N D D
Sbjct: 309 -----------------NED--------EKKPPVDTP-------------SDEAINSDLD 368

Query: 368 DDDLDDVDQGEELST--QHLVLAQFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEF 398
           D D D+  + EE S   Q +VL  +DKV   K++WKC  +DG++ ++ KD LF KA GEF
Sbjct: 369 DPDSDEAPETEEGSDIGQAIVLCLYDKVNHHKNKWKCVFRDGVVGVNGKDYLFFKANGEF 368

[Close]

BLAST of Sed0005276 vs. ExPASy Swiss-Prot
Match: Q54G80 (Transcription initiation factor IIA subunit 1 OS=Dictyostelium discoideum OX=44689 GN=gtf2a1 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-09
Identity = 62/198 (31.31%), Postives = 91/198 (45.96%), Query Frame = 0


Query: 218 FIPQQDGAGDASNSVFEIEISGSNASDGRSFITSANSAVSSHIARSLLKI----PQLDGP 277
           ++P Q    + ++         +N ++  +   S+NS+ ++++  SL  I    PQ DG 
Sbjct: 114 YLPPQKEVSNGTSPTMNSSNGSNNNNNNNNSNNSSNSSNNNNLPSSLRSIMNPMPQNDGT 173

Query: 278 IPDPYDVELSTPNIYNYQGAYNEDYNI---------ANTPAPNDPPAGTPAVVIQDDVVD 337
           + D  D +    N  N     N   NI          N     D        +  DD +D
Sbjct: 174 L-DESDNDDDNNNNNNDNDNENNKDNIDKLIIDGFKKNFNFNGDEVIPQNDGLNDDDDLD 233

Query: 338 EED--------SEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKD 395
           +E+         E SL  D DDDD DD D       +H VL Q++KV+R K++ KC  KD
Sbjct: 234 DEEIGGGGGKVEEDSLGSDLDDDDDDDPDP----IIEHFVLCQYEKVSRIKNKRKCNFKD 293

[Close]

BLAST of Sed0005276 vs. ExPASy Swiss-Prot
Match: P52655 (Transcription initiation factor IIA subunit 1 OS=Homo sapiens OX=9606 GN=GTF2A1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-08
Identity = 96/405 (23.70%), Postives = 167/405 (41.23%), Query Frame = 0


Query: 8   IYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG---PIERSALSKPT 67
           +Y +VIEDV+N +R+ F+D+G  E VL EL+ +WE K+MQ+ AV G     ++  L    
Sbjct: 13  LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFHSEEQQLLLQVQQ 72

Query: 68  PGGPITPVHDLNVPYEGTEEYET-----PTADMLFPPTPLQTPIQTPLPGTADNGMYNIP 127
              P    H  +  ++  +  +T      T  +L P +   T  Q  +P +      N  
Sbjct: 73  QHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLIQHMN-A 132

Query: 128 TGLSDHSASGTDASPAAATP-----GGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNI 187
           + +S  + + T A PA  TP       S   +  VR      Y+  P            +
Sbjct: 133 SNMSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQ--------QSVV 192

Query: 188 AYEEGRDETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFI-PQQDGAGDASNSVF 247
             ++   +   G   + + Q  L    G           QT   I PQQ         V 
Sbjct: 193 LQQQVIPQMQPGGVQAPVIQQVLAPLPG-------GISPQTGVIIQPQQILFTGNKTQVI 252

Query: 248 EIEISGSNASDGRSFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGA 307
              ++    +  +   T      +         + Q+DG        + S+    + +  
Sbjct: 253 PTTVAAPTPAQAQITATGQQQPQAQPAQTQAPLVLQVDG------TGDTSSEEDEDEEED 312

Query: 308 YNEDYNIANTPAPNDPPAGTPAVVIQDDVVDEEDSEPSLNEDDDDDDLDDVDQGEEL-ST 367
           Y++D                     +D   D +  E  LN +DD  D    ++G+EL  T
Sbjct: 313 YDDDEEEDKE---------------KDGAEDGQVEEEPLNSEDDVSD----EEGQELFDT 372

Query: 368 QHLVLAQFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           +++V+ Q+DK+ R+K++WK  LKDGIM+++ +D +F+KA G+ ++
Sbjct: 373 ENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376

[Close]

BLAST of Sed0005276 vs. ExPASy Swiss-Prot
Match: O08949 (Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus OX=10116 GN=Gtf2a1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-08
Identity = 95/404 (23.51%), Postives = 165/404 (40.84%), Query Frame = 0


Query: 8   IYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG---PIERSALSKPT 67
           +Y +VIEDV+N +R+ F+D+G  E VL EL+ +WE K+MQ+ AV G     ++  L    
Sbjct: 13  LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFHSEEQQLLLQVQQ 72

Query: 68  PGGPITPVHDLNVPYEGTEEYET-----PTADMLFPPTPLQTPIQTPLPGTADNGMYNIP 127
              P    H  +  ++  +  +T      T  +L P +   T  Q  +P +      N  
Sbjct: 73  QHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLIQHMNAS 132

Query: 128 TGLSDHSASGTDASPAAATP-----GGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNI 187
           +  S  + + T A PA  TP       S   +  VR      Y+  P            +
Sbjct: 133 SITSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQ--------QSVV 192

Query: 188 AYEEGRDETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFE 247
             ++   +   G   + + Q  L    G           QT   I  Q           +
Sbjct: 193 LQQQVIPQMQPGGVQAPVIQQVLAPLPG-------GISPQTGVIIQPQ-----------Q 252

Query: 248 IEISGSNASDGRSFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAY 307
           I  +G+      + + +   A +        +IP      P     +   P +    G  
Sbjct: 253 ILFTGNKTQVIPTTVAAPTPAQA--------QIPAAGQQQPQAQPAQQQAPLVLQVDGT- 312

Query: 308 NEDYNIANTPAPNDPPAGTPAVVIQDDVVDEEDSEPSLNEDDDDDDLDDVDQGEEL-STQ 367
            +  +  +     D          +D   D +  E  LN +DD  D    ++G+EL  T+
Sbjct: 313 GDTSSEEDEDEEEDYDDDEEEDKEKDGAEDGQVEEEPLNSEDDVSD----EEGQELFDTE 372

Query: 368 HLVLAQFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           ++V+ Q+DK+ R+K++WK  LKDGIM+++ +D +F+KA G+ ++
Sbjct: 373 NVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 377

[Close]

BLAST of Sed0005276 vs. ExPASy Swiss-Prot
Match: Q5RCU0 (Transcription initiation factor IIA subunit 1 OS=Pongo abelii OX=9601 GN=GTF2A1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-08
Identity = 96/405 (23.70%), Postives = 167/405 (41.23%), Query Frame = 0


Query: 8   IYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG---PIERSALSKPT 67
           +Y +VIEDV+N +R+ F+D+G  E VL EL+ +WE K+MQ+ AV G     ++  L    
Sbjct: 13  LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFHSEEQQLLLQVQQ 72

Query: 68  PGGPITPVHDLNVPYEGTEEYET-----PTADMLFPPTPLQTPIQTPLPGTADNGMYNIP 127
              P    H  +  ++  +  +T      T  +L P +   T  Q  +P +      N  
Sbjct: 73  QHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLIQHMN-A 132

Query: 128 TGLSDHSASGTDASPAAATP-----GGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNI 187
           + +S  + + T A PA  TP       S   +  VR      Y+  P            +
Sbjct: 133 SNMSAAATAATLALPAGVTPVQQILTNSGQLLQVVRVANGAQYIFQPQ--------QSVV 192

Query: 188 AYEEGRDETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFI-PQQDGAGDASNSVF 247
             ++   +   G   + + Q  L    G           QT   I PQQ         V 
Sbjct: 193 LQQQVIPQMQPGGVQAPVIQQVLAPLPG-------GISPQTGVIIQPQQILFTGNKTQVI 252

Query: 248 EIEISGSNASDGRSFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGA 307
              ++    +  +   T      +         + Q+DG        + S+    + +  
Sbjct: 253 PTTVAAPTPAQAQITATGHQQPQAQPAQTQAPLVLQVDG------TGDTSSEEDEDEEED 312

Query: 308 YNEDYNIANTPAPNDPPAGTPAVVIQDDVVDEEDSEPSLNEDDDDDDLDDVDQGEEL-ST 367
           Y++D                     +D   D +  E  LN +DD  D    ++G+EL  T
Sbjct: 313 YDDDEEEDKE---------------KDGAEDGQVEEEPLNSEDDVSD----EEGQELFDT 372

Query: 368 QHLVLAQFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           +++V+ Q+DK+ R+K++WK  LKDGIM+++ +D +F+KA G+ ++
Sbjct: 373 ENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376

[Close]

BLAST of Sed0005276 vs. ExPASy TrEMBL
Match: A0A6J1G5C0 (transcription initiation factor IIA subunit 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450969 PE=3 SV=1)

HSP 1 Score: 704.1 bits (1816), Expect = 3.2e-199
Identity = 361/399 (90.48%), Postives = 374/399 (93.73%), Query Frame = 0


Query: 1   MAISTSSIYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAL 60
           M  STSSIYINVIEDV+NKLR EFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSA 
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTAD+LFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GLSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNIAYEEGR 180
           G SDHSASGTDASPAA TPGGSANNV +VR GRPTP+MQPPSWMGQRTPVDVNIAY EGR
Sbjct: 121 GPSDHSASGTDASPAATTPGGSANNV-DVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEISGS 240
           +ETDRGAAH SLTQDF  MN+GKRKRDDFASQYQT+GFIPQQDGA DA NSVFEIEISG 
Sbjct: 181 EETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADNSVFEIEISGC 240

Query: 241 NASDG-RSFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNEDYN 300
           NASDG   F TSAN+A SS IARSLLKIPQLDGP+PDPYD ELSTPNIYNYQG +NEDYN
Sbjct: 241 NASDGIPDFSTSANNATSSRIARSLLKIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYN 300

Query: 301 IANTPAPNDPPAGTPAVVIQDDV-VDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360
           IANTPAPNDPPAGTPAVV+QDDV  +EEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA
Sbjct: 301 IANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360

Query: 361 QFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           QFDKVTRTKSRWKCTLKDGIMHI+NKDILFNKATGEFDF
Sbjct: 361 QFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Sed0005276 vs. ExPASy TrEMBL
Match: A0A6J1L3S0 (transcription initiation factor IIA subunit 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499632 PE=3 SV=1)

HSP 1 Score: 703.7 bits (1815), Expect = 4.2e-199
Identity = 360/399 (90.23%), Postives = 373/399 (93.48%), Query Frame = 0


Query: 1   MAISTSSIYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAL 60
           M  STSSIYINVIEDV+NKLR EFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSA 
Sbjct: 1   MTTSTSSIYINVIEDVINKLRNEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTAD+LFPPTPLQTPIQTPLPGTADNGMYNIPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNGMYNIPT 120

Query: 121 GLSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNIAYEEGR 180
           G SDHSASGTDASPAA TPGGS NNV +VR GRPTP+MQPPSWMGQRTPVDVNIAY EGR
Sbjct: 121 GPSDHSASGTDASPAATTPGGSTNNV-DVRSGRPTPFMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEISGS 240
           +ETDRGAAH SLTQDF  MN+GKRKRDDFASQYQT+GFIPQQDGA DA NSVFEIEISG 
Sbjct: 181 EETDRGAAHPSLTQDFFTMNAGKRKRDDFASQYQTSGFIPQQDGAVDADNSVFEIEISGC 240

Query: 241 NASDG-RSFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNEDYN 300
           NASDG   F TSAN+  SSHIARSLLKIPQLDGP+PDPYD ELSTPNIYNYQG +NEDYN
Sbjct: 241 NASDGIPDFSTSANNETSSHIARSLLKIPQLDGPMPDPYDDELSTPNIYNYQGVFNEDYN 300

Query: 301 IANTPAPNDPPAGTPAVVIQDDV-VDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360
           IANTPAPNDPPAGTPAVV+QDDV  +EEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA
Sbjct: 301 IANTPAPNDPPAGTPAVVVQDDVGEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360

Query: 361 QFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           QFDKVTRTKSRWKCTLKDGIMHI+NKDILFNKATGEFDF
Sbjct: 361 QFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Sed0005276 vs. ExPASy TrEMBL
Match: A0A1S3CM61 (transcription initiation factor IIA subunit 1 OS=Cucumis melo OX=3656 GN=LOC103502057 PE=3 SV=1)

HSP 1 Score: 698.0 bits (1800), Expect = 2.3e-197
Identity = 359/401 (89.53%), Postives = 371/401 (92.52%), Query Frame = 0


Query: 1   MAISTSSIYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAL 60
           MA STSSIYINVIEDV+NKLR+EFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSA 
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTAD+LFPPTPLQTPIQTPLPGTADN MYN+PT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GLSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNIAYEEGR 180
           G SDHSASGTD SPAA TPGGS NN  EVR GRPTPYMQPPSWMGQRTPVDVNIAY EGR
Sbjct: 121 GPSDHSASGTDDSPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DETDRGA--AHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEIS 240
           +E DRGA  AH SLTQDF MMNSGKRKRDDFASQYQ NGFIPQQDGAGDA+NSVFEIEIS
Sbjct: 181 EEADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEIS 240

Query: 241 GSNASDGR-SFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNED 300
           G N+SDGR   ITSA SA SS+I RSLLKIPQLDGP+PDPYD  LSTPNIYNYQG +NED
Sbjct: 241 GCNSSDGRPGVITSAKSATSSYIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300

Query: 301 YNIANTPAPNDPPAGTPAVVIQDDV-VDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLV 360
           YNIANTPAPNDPPAGTPAVV QDDV  +EEDSEPSLNEDDDDDDLDDVDQGEELSTQHLV
Sbjct: 301 YNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLV 360

Query: 361 LAQFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           LAQFDKVTRTKSRWKCTLKDGIMHI+NKDILFNKATGEFDF
Sbjct: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 401

[Close]

BLAST of Sed0005276 vs. ExPASy TrEMBL
Match: A0A0A0KE66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188660 PE=3 SV=1)

HSP 1 Score: 697.6 bits (1799), Expect = 3.0e-197
Identity = 361/402 (89.80%), Postives = 372/402 (92.54%), Query Frame = 0


Query: 1   MAISTSSIYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAL 60
           MA STSSIYINVIEDV+NKLR+EFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSA 
Sbjct: 135 MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 194

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTAD+LFPPTPLQTPIQTPLPGTADN MYN+PT
Sbjct: 195 SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 254

Query: 121 GLSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNIAYEEGR 180
           G SDHSASGTDASPAA TPGGS NN  EVR GRPTPYMQPPSWMGQRTPVDVNIAY EGR
Sbjct: 255 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 314

Query: 181 DE-TDRGA--AHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEI 240
           +E  DRGA  AH SLTQDF MMNSGKRKRDDFASQYQ NGFIPQQDGAGDA+NSVFEIEI
Sbjct: 315 EEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEI 374

Query: 241 SGSNASDGR-SFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNE 300
           SG N+SDGR   ITSA SA SSHI RSLLKIPQLDGP+PDPYD  LSTPNIYNYQG +NE
Sbjct: 375 SGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNE 434

Query: 301 DYNIANTPAPNDPPAGTPAVVIQDDV-VDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHL 360
           DYNIANTPAPNDPPAGTPAVV QDDV  +EEDSEPSLNEDDDDDDLDDVDQGEELSTQHL
Sbjct: 435 DYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHL 494

Query: 361 VLAQFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           VLAQFDKVTRTKSRWKCTLKDGIMHI+NKDILFNKATGEFDF
Sbjct: 495 VLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 536

[Close]

BLAST of Sed0005276 vs. ExPASy TrEMBL
Match: A0A6J1JHB9 (transcription initiation factor IIA large subunit-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484486 PE=3 SV=1)

HSP 1 Score: 686.0 bits (1769), Expect = 9.1e-194
Identity = 351/399 (87.97%), Postives = 365/399 (91.48%), Query Frame = 0


Query: 1   MAISTSSIYINVIEDVVNKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAL 60
           MAISTSSIYINVIEDVVNKLR+EF DNGPGEDVLKELQGMWEAKMMQAGAV GPIERSA 
Sbjct: 1   MAISTSSIYINVIEDVVNKLRDEFTDNGPGEDVLKELQGMWEAKMMQAGAVNGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADNGMYNIPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTAD+LFPPTPLQTPIQTPLPGTADN MYN+PT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GLSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPSWMGQRTPVDVNIAYEEGR 180
           G SDHSASGTDASPA  TPGGSA+NV +VR GRPT +MQPPSWMGQ+ PVDVNIAY EGR
Sbjct: 121 GPSDHSASGTDASPAVTTPGGSASNV-DVRSGRPTQFMQPPSWMGQKAPVDVNIAYVEGR 180

Query: 181 DETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEISGS 240
           DE DRG  H +LTQDF MMNSGKRKRD FASQYQTNGFIPQQDGAGDA+NSVFEIEISG 
Sbjct: 181 DEADRGVPHPALTQDFFMMNSGKRKRDGFASQYQTNGFIPQQDGAGDAANSVFEIEISGC 240

Query: 241 NASDGR-SFITSANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNEDYN 300
           NASDGR   ITSA SA  +HI RSL KIPQLDGPIPDPYD  LSTPNIYNYQG +NEDYN
Sbjct: 241 NASDGRPGVITSAKSATLTHIKRSLFKIPQLDGPIPDPYDDVLSTPNIYNYQGVFNEDYN 300

Query: 301 IANTPAPNDPPAGTPAVVIQDDV-VDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLA 360
           IANTPAPNDPPAGTPAVV QDDV  +EED EPSLNEDDDDDDLDDVDQGEE+STQHLVLA
Sbjct: 301 IANTPAPNDPPAGTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEEVSTQHLVLA 360

Query: 361 QFDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           QFDKVTRTKSRWKCTLKDGIMHI+NKDILFNKATGEFDF
Sbjct: 361 QFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 398

[Close]

BLAST of Sed0005276 vs. TAIR 10
Match: AT1G07480.1 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 441.4 bits (1134), Expect = 7.5e-124
Identity = 245/398 (61.56%), Postives = 292/398 (73.37%), Query Frame = 0


Query: 4   STSSIYINVIEDVVNKLREEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSALSK 63
           +TS++YI+VIEDVVNK+REEF++N GPGE VL ELQG+WE KMMQAG + GPIERS+  K
Sbjct: 6   TTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQK 65

Query: 64  PTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADN-GMYNIPTG 123
           PTPGGP+T  HDLNVPYEGTEEYETPTA+MLFPPTPLQTP+ TPLPGTADN  MYNIPTG
Sbjct: 66  PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIPTG 125

Query: 124 LSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPS-WMGQRTPVDVNIAYEEGR 183
            SD+   GT+            N V      RP+PYM PPS W   R  +DVN+AY +GR
Sbjct: 126 SSDYPTPGTE------------NGVNIDVKARPSPYMPPPSPWTNPR--LDVNVAYVDGR 185

Query: 184 DETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEISGS 243
           DE +RG ++   TQD  + +SGKRKRDD +  YQ  G IPQQDGAGDA        I  +
Sbjct: 186 DEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDA--------IPEA 245

Query: 244 NASDGRSFITS-ANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNEDYN 303
           N       ITS  +  V      S  KIPQ+DGP+PDPYD  LSTPNIY+YQG  +E++N
Sbjct: 246 NFECDAFRITSIGDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPNIYSYQGP-SEEFN 305

Query: 304 IANTPAPNDPPAGTPAVVIQDDVVDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQ 363
            A TPAPN+    TP V +Q+D++  ED E  LNEDDDDD+LDD++ GE+++TQHLVLAQ
Sbjct: 306 EARTPAPNEIQTSTP-VAVQNDII--EDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQ 365

Query: 364 FDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           FDKVTRTKSRWKC+LKDGIMHI++KDILFNKA GEFDF
Sbjct: 366 FDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375

[Close]

BLAST of Sed0005276 vs. TAIR 10
Match: AT1G07480.2 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 441.4 bits (1134), Expect = 7.5e-124
Identity = 245/398 (61.56%), Postives = 292/398 (73.37%), Query Frame = 0


Query: 4   STSSIYINVIEDVVNKLREEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSALSK 63
           +TS++YI+VIEDVVNK+REEF++N GPGE VL ELQG+WE KMMQAG + GPIERS+  K
Sbjct: 6   TTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQK 65

Query: 64  PTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADN-GMYNIPTG 123
           PTPGGP+T  HDLNVPYEGTEEYETPTA+MLFPPTPLQTP+ TPLPGTADN  MYNIPTG
Sbjct: 66  PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIPTG 125

Query: 124 LSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPS-WMGQRTPVDVNIAYEEGR 183
            SD+   GT+            N V      RP+PYM PPS W   R  +DVN+AY +GR
Sbjct: 126 SSDYPTPGTE------------NGVNIDVKARPSPYMPPPSPWTNPR--LDVNVAYVDGR 185

Query: 184 DETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEISGS 243
           DE +RG ++   TQD  + +SGKRKRDD +  YQ  G IPQQDGAGDA        I  +
Sbjct: 186 DEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDA--------IPEA 245

Query: 244 NASDGRSFITS-ANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNEDYN 303
           N       ITS  +  V      S  KIPQ+DGP+PDPYD  LSTPNIY+YQG  +E++N
Sbjct: 246 NFECDAFRITSIGDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPNIYSYQGP-SEEFN 305

Query: 304 IANTPAPNDPPAGTPAVVIQDDVVDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQ 363
            A TPAPN+    TP V +Q+D++  ED E  LNEDDDDD+LDD++ GE+++TQHLVLAQ
Sbjct: 306 EARTPAPNEIQTSTP-VAVQNDII--EDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQ 365

Query: 364 FDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           FDKVTRTKSRWKC+LKDGIMHI++KDILFNKA GEFDF
Sbjct: 366 FDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375

[Close]

BLAST of Sed0005276 vs. TAIR 10
Match: AT1G07470.1 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 439.5 bits (1129), Expect = 2.9e-123
Identity = 243/398 (61.06%), Postives = 292/398 (73.37%), Query Frame = 0


Query: 4   STSSIYINVIEDVVNKLREEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSALSK 63
           +TS++YI+VIEDVVNK+REEF++N GPGE VL ELQG+WE KMMQAG + GPIERS+  K
Sbjct: 6   TTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQK 65

Query: 64  PTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPGTADN-GMYNIPTG 123
           PTPGGP+T  HDLNVPYEGTEEYETPTA+MLFPPTPLQTP+ TPLPGTADN  MYNIPTG
Sbjct: 66  PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIPTG 125

Query: 124 LSDHSASGTDASPAAATPGGSANNVGEVRPGRPTPYMQPPS-WMGQRTPVDVNIAYEEGR 183
            SD+   GT+            N V      RP+PYM PPS W   R  +DVN+AY +GR
Sbjct: 126 SSDYPTPGTE------------NGVNIDVKARPSPYMPPPSPWTNPR--LDVNVAYVDGR 185

Query: 184 DETDRGAAHSSLTQDFLMMNSGKRKRDDFASQYQTNGFIPQQDGAGDASNSVFEIEISGS 243
           DE +RG ++   TQD  + +SGKRKRDD ++ YQ  G IPQQDGA DA        I  +
Sbjct: 186 DEPERGNSNQQFTQDLFVPSSGKRKRDDSSAHYQNGGSIPQQDGASDA--------IPEA 245

Query: 244 NASDGRSFIT-SANSAVSSHIARSLLKIPQLDGPIPDPYDVELSTPNIYNYQGAYNEDYN 303
           N       IT   +  +   +  S  KIPQ+DGP+PDPYD  LSTPNIY+YQG  NE++N
Sbjct: 246 NFECAALRITYVGDRKIPRDLIGSSSKIPQVDGPMPDPYDEMLSTPNIYSYQGP-NEEFN 305

Query: 304 IANTPAPNDPPAGTPAVVIQDDVVDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQ 363
            A TPAPN+    TP V + +D++  ED E  LNEDDDDD+LDD++ GE+++TQHLVLAQ
Sbjct: 306 EARTPAPNEIQTSTP-VAVPNDII--EDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQ 365

Query: 364 FDKVTRTKSRWKCTLKDGIMHIDNKDILFNKATGEFDF 398
           FDKVTRTKSRWKC+LKDGIMHI++KDILFNKATGEFDF
Sbjct: 366 FDKVTRTKSRWKCSLKDGIMHINDKDILFNKATGEFDF 375

[Close]

BLAST of Sed0005276 vs. TAIR 10
Match: AT5G59230.1 (transcription factor-related )

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-14
Identity = 37/76 (48.68%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 322 VVDEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHI 381
           +VD +++E  LNEDDDD++ DD+D  ++++ QHLV+ QFDKV R+K++W+C    G+M I
Sbjct: 113 IVDVDENEEPLNEDDDDEE-DDIDD-DDMNIQHLVMCQFDKVKRSKNKWECKFNAGVMQI 172

Query: 382 DNKDILFNKATGEFDF 398
           + K++LF++ATG+F+F
Sbjct: 173 NGKNVLFSQATGDFNF 186

HSP 2 Score: 61.2 bits (147), Expect = 2.1e-09
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 5  TSSIYINVIEDVVNKLREEFVDNGP-GEDVLKELQGMWEAKMMQAGAVTGPIERSALSKP 64
          TSS Y  VI+DV+NK R + V NG   E VL ++Q MW+ KM+QAGA++G IE S+ S P
Sbjct: 8  TSSSYNYVIDDVINKSRCDLVYNGELDESVLSQIQSMWKTKMIQAGAMSGTIETSSASIP 67

The following BLAST results are available for this feature:

BLAST of Sed0005276 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946939.1	6.7e-199	90.48	transcription initiation factor IIA subunit 1-like isoform X1 [Cucurbita moschat...	[more]
XP_023007009.1	8.7e-199	90.23	transcription initiation factor IIA subunit 1-like isoform X1 [Cucurbita maxima]	[more]
XP_023532247.1	2.5e-198	90.23	transcription initiation factor IIA subunit 1-like isoform X1 [Cucurbita pepo su...	[more]
XP_038901376.1	7.4e-198	90.27	transcription initiation factor IIA subunit 1-like [Benincasa hispida]	[more]
KAG6605439.1	1.3e-197	89.97	hypothetical protein SDJN03_02756, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0005276 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9USU9	3.1e-13	25.12	Transcription initiation factor IIA large subunit OS=Schizosaccharomyces pombe (...	[more]
Q54G80	3.5e-09	31.31	Transcription initiation factor IIA subunit 1 OS=Dictyostelium discoideum OX=446...	[more]
P52655	1.0e-08	23.70	Transcription initiation factor IIA subunit 1 OS=Homo sapiens OX=9606 GN=GTF2A1 ...	[more]
O08949	1.0e-08	23.51	Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus OX=10116 GN=G...	[more]
Q5RCU0	1.8e-08	23.70	Transcription initiation factor IIA subunit 1 OS=Pongo abelii OX=9601 GN=GTF2A1 ...	[more]

BLAST of Sed0005276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5C0	3.2e-199	90.48	transcription initiation factor IIA subunit 1-like isoform X1 OS=Cucurbita mosch...	[more]
A0A6J1L3S0	4.2e-199	90.23	transcription initiation factor IIA subunit 1-like isoform X1 OS=Cucurbita maxim...	[more]
A0A1S3CM61	2.3e-197	89.53	transcription initiation factor IIA subunit 1 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A0A0KE66	3.0e-197	89.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188660 PE=3 SV=1	[more]
A0A6J1JHB9	9.1e-194	87.97	transcription initiation factor IIA large subunit-like isoform X2 OS=Cucurbita m...	[more]

BLAST of Sed0005276 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07480.1	7.5e-124	61.56	Transcription factor IIA, alpha/beta subunit	[more]
AT1G07480.2	7.5e-124	61.56	Transcription factor IIA, alpha/beta subunit	[more]
AT1G07470.1	2.9e-123	61.06	Transcription factor IIA, alpha/beta subunit	[more]
AT5G59230.1	1.7e-14	48.68	transcription factor-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004855	Transcription factor IIA, alpha/beta subunit	SMART	SM01371	TFIIA_2	coord: 7..390 e-value: 6.2E-88 score: 308.1
IPR004855	Transcription factor IIA, alpha/beta subunit	PFAM	PF03153	TFIIA	coord: 201..392 e-value: 1.8E-26 score: 94.1 coord: 8..113 e-value: 6.6E-14 score: 52.7
IPR004855	Transcription factor IIA, alpha/beta subunit	PANTHER	PTHR12694	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1	coord: 3..394
IPR009088	Transcription factor IIA, beta-barrel	GENE3D	2.30.18.10		coord: 331..396 e-value: 2.0E-21 score: 77.2
IPR009088	Transcription factor IIA, beta-barrel	SUPERFAMILY	50784	Transcription factor IIA (TFIIA), beta-barrel domain	coord: 340..394
None	No IPR available	GENE3D	1.10.287.100		coord: 2..53 e-value: 1.1E-19 score: 71.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 323..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..140
None	No IPR available	PANTHER	PTHR12694:SF16	BNAC08G45360D PROTEIN	coord: 3..394
None	No IPR available	CDD	cd07976	TFIIA_alpha_beta_like	coord: 352..392 e-value: 2.06602E-22 score: 89.1207
None	No IPR available	CDD	cd07976	TFIIA_alpha_beta_like	coord: 5..58 e-value: 1.23695E-16 score: 72.9423
None	No IPR available	SUPERFAMILY	47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 5..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005276.1	Sed0005276.1	mRNA
Sed0005276.2	Sed0005276.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005672	transcription factor TFIIA complex
molecular_function	GO:0003743	translation initiation factor activity