Sed0005193 (gene) Chayote v1

Overview
NameSed0005193
Typegene
OrganismSechium edule (Chayote v1)
Descriptionethylene-responsive transcription factor TINY
LocationLG06: 45474950 .. 45475642 (-)
RNA-Seq ExpressionSed0005193
SyntenySed0005193
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGACGGATATTCAGGCGGCGGAGGCCAAGGCGGCGGCGATGGTGGATTTTGATTTACCGACGGCGTCGATTGATGAAGGAGGGTCTGATGATTTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAATTTAGAGCTGAGTCGTGGAACGAGTTCCAGTTCGATGACCCGGTCGATTGGTGGAGGAAACCGCCGTTCGCGGCGGCGGAAACGGATTTCTCTTGCGGGTTTCCCGATCAGAATACGATTCCGGTCGCCTTCGACGGCGGCTATTGCGATTGGAAAAAAAAAGTAAAATTAAAAAGCTATTCTAACACATCATTTCTATTACTAATATTTATATTTTACTTATATATATATATATTTTCAAAATCAAACTAAAATTTTAAAGATTTAAAAATATGTTTCAAATTAAGAGTATATAAAAGAATTCTAAAACAAATATATAAAAGGACGGACAACTCAAACTACCCAATCAAAATGGTAAAAGTTGAGTTGAGTTATAAATTTATTTGAGTTTTGTTAAGTTATGAATTTATCATTTGTTTTTAGGGTTGACCAATTTTTGATTTGTTCAACCCAATCTAACATTAACTTAGAGTGTATATATATTTGTATGCGCAAGAGACATTAATTAATAATATAATTTATTATCATATTAATAAGGTACATTTACTAGTAAGATGA

mRNA sequence

ATGCCGACGGATATTCAGGCGGCGGAGGCCAAGGCGGCGGCGATGGTGGATTTTGATTTACCGACGGCGTCGATTGATGAAGGAGGGTCTGATGATTTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAATTTAGAGCTGAGTCGTGGAACGAGTTCCAGTTCGATGACCCGGTCGATTGGTGGAGGAAACCGCCGTTCGCGGCGGCGGAAACGGATTTCTCTTGCGGGTTTCCCGATCAGAATACGATTCCGACATTAATTAATAATATAATTTATTATCATATTAATAAGGTACATTTACTAGTAAGATGA

Coding sequence (CDS)

ATGCCGACGGATATTCAGGCGGCGGAGGCCAAGGCGGCGGCGATGGTGGATTTTGATTTACCGACGGCGTCGATTGATGAAGGAGGGTCTGATGATTTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAATTTAGAGCTGAGTCGTGGAACGAGTTCCAGTTCGATGACCCGGTCGATTGGTGGAGGAAACCGCCGTTCGCGGCGGCGGAAACGGATTTCTCTTGCGGGTTTCCCGATCAGAATACGATTCCGACATTAATTAATAATATAATTTATTATCATATTAATAAGGTACATTTACTAGTAAGATGA

Protein sequence

MPTDIQAAEAKAAAMVDFDLPTASIDEGGSDDLGEIVELPNIEEEFRAESWNEFQFDDPVDWWRKPPFAAAETDFSCGFPDQNTIPTLINNIIYYHINKVHLLVR
Homology
[Close]
BLAST of Sed0005193 vs. NCBI nr
Match: KAG6606753.1 (Ethylene-responsive transcription factor TINY, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.0 bits (310), Expect = 7.6e-25
Identity = 63/94 (67.02%), Postives = 71/94 (75.53%), Query Frame = 0 

Query: 1   MPTDIQAAEAKAAAMVDFD--LPTASID--EGGSDDLGEIVELPNIEEEFRAESWNEFQF 60
           MPTDIQAA AKAAAMVDFD  +PT S    E GSD+LGEIVELPNIEEE  AESWN+F+ 
Sbjct: 38  MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 97

Query: 61  DDPVDWWRKPPFAAAETDFSCGFPDQNTIPTLIN 91
            D VDWW  PP+  AETDF  GF DQ+TIP + +
Sbjct: 98  VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFD 131

[Close]
BLAST of Sed0005193 vs. NCBI nr
Match: KAG7036467.1 (hypothetical protein SDJN02_00084, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.0 bits (310), Expect = 7.6e-25
Identity = 63/94 (67.02%), Postives = 71/94 (75.53%), Query Frame = 0 

Query: 1  MPTDIQAAEAKAAAMVDFD--LPTASID--EGGSDDLGEIVELPNIEEEFRAESWNEFQF 60
          MPTDIQAA AKAAAMVDFD  +PT S    E GSD+LGEIVELPNIEEE  AESWN+F+ 
Sbjct: 1  MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60

Query: 61 DDPVDWWRKPPFAAAETDFSCGFPDQNTIPTLIN 91
           D VDWW  PP+  AETDF  GF DQ+TIP + +
Sbjct: 61 VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFD 94

[Close]
BLAST of Sed0005193 vs. NCBI nr
Match: XP_008447541.1 (PREDICTED: ethylene-responsive transcription factor TINY [Cucumis melo] >KAA0050826.1 ethylene-responsive transcription factor TINY [Cucumis melo var. makuwa] >TYK08521.1 ethylene-responsive transcription factor TINY [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-24
Identity = 61/88 (69.32%), Postives = 65/88 (73.86%), Query Frame = 0 

Query: 1   MPTDIQAAEAKAAAMVDFDLPTASIDEG--GSDDLGEIVELPNIEEEFRAESWNEFQFDD 60
           MP DIQ A AKAAAMVDFD  T S   G  GSD+LGEIVELPNIEE+ RAESWNEF+F D
Sbjct: 105 MPRDIQEAAAKAAAMVDFDSETVSFSNGEEGSDELGEIVELPNIEEDIRAESWNEFEFID 164

Query: 61  PVDWWRKPPFAAAETDFSCGFPDQNTIP 87
            VDWW  PPF AAE DF   F DQ+T P
Sbjct: 165 SVDWWGNPPFTAAEMDFCAVFSDQSTAP 192

[Close]
BLAST of Sed0005193 vs. NCBI nr
Match: XP_022949201.1 (ethylene-responsive transcription factor TINY-like [Cucurbita moschata])

HSP 1 Score: 120.9 bits (302), Expect = 6.4e-24
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 1   MPTDIQAAEAKAAAMVDFD--LPT--ASIDEGGSDDLGEIVELPNIEEEFRAESWNEFQF 60
           MPTDIQAA AKAAAMVDFD  +PT  +S DE GSD+LGEIVELPNIEEE  AES N+F+ 
Sbjct: 97  MPTDIQAAAAKAAAMVDFDSTVPTTSSSNDEEGSDELGEIVELPNIEEEISAESLNKFEL 156

Query: 61  DDPVDWWRKPPFAAAETDFSCGFPDQNTIPTLIN 91
            D VDWW  PP+ AAETDF  GF DQ TIP + +
Sbjct: 157 VDSVDWWGNPPYTAAETDFFAGFSDQCTIPVIFD 190

[Close]
BLAST of Sed0005193 vs. NCBI nr
Match: XP_022979607.1 (ethylene-responsive transcription factor TINY-like [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 8.4e-24
Identity = 62/89 (69.66%), Postives = 68/89 (76.40%), Query Frame = 0 

Query: 1   MPTDIQAAEAKAAAMVDFDLPT-----ASIDEGGSDDLGEIVELPNIEEEFRAESWNEFQ 60
           MP DIQAA AKAAAMVDFD  T     +S DEGGSD+LGEIVELPNIEE+ RAESW+EF+
Sbjct: 100 MPRDIQAAAAKAAAMVDFDTTTTASFSSSNDEGGSDELGEIVELPNIEEDIRAESWSEFE 159

Query: 61  FDDPVDWWRKPPFAAAETDFSCGFPDQNT 85
           F D VDWW  PPF AAE DF   F DQ+T
Sbjct: 160 FIDSVDWWGNPPFVAAEMDFCPLFADQST 188

[Close]
BLAST of Sed0005193 vs. ExPASy TrEMBL
Match: A0A0A0LAT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455130 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 62/98 (63.27%), Postives = 72/98 (73.47%), Query Frame = 0 

Query: 1  MPTDIQAAEAKAAAMVDFDLPTASIDEG--GSDDLGEIVELPNIEEEFRAESWNEFQFDD 60
          MP DIQ A AKAAAMVDFD  T S   G  GSD+L EIVELPNIEE+ RAESWNEF+F D
Sbjct: 1  MPRDIQEAAAKAAAMVDFDSETVSFSNGEEGSDELAEIVELPNIEEDIRAESWNEFEFID 60

Query: 61 PVDWWRKPPFAAAETDFSCGFPDQNTIP-TLINNIIYY 96
           VDWW  PPF AAE DF   F DQ+T P  L+N+++++
Sbjct: 61 SVDWWGNPPFTAAEMDFCAVFSDQSTAPEILVNSLLHF 98

[Close]
BLAST of Sed0005193 vs. ExPASy TrEMBL
Match: A0A5D3C9I7 (Ethylene-responsive transcription factor TINY OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00580 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 61/88 (69.32%), Postives = 65/88 (73.86%), Query Frame = 0 

Query: 1   MPTDIQAAEAKAAAMVDFDLPTASIDEG--GSDDLGEIVELPNIEEEFRAESWNEFQFDD 60
           MP DIQ A AKAAAMVDFD  T S   G  GSD+LGEIVELPNIEE+ RAESWNEF+F D
Sbjct: 105 MPRDIQEAAAKAAAMVDFDSETVSFSNGEEGSDELGEIVELPNIEEDIRAESWNEFEFID 164

Query: 61  PVDWWRKPPFAAAETDFSCGFPDQNTIP 87
            VDWW  PPF AAE DF   F DQ+T P
Sbjct: 165 SVDWWGNPPFTAAEMDFCAVFSDQSTAP 192

[Close]
BLAST of Sed0005193 vs. ExPASy TrEMBL
Match: A0A1S3BHN5 (ethylene-responsive transcription factor TINY OS=Cucumis melo OX=3656 GN=LOC103489964 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 61/88 (69.32%), Postives = 65/88 (73.86%), Query Frame = 0 

Query: 1   MPTDIQAAEAKAAAMVDFDLPTASIDEG--GSDDLGEIVELPNIEEEFRAESWNEFQFDD 60
           MP DIQ A AKAAAMVDFD  T S   G  GSD+LGEIVELPNIEE+ RAESWNEF+F D
Sbjct: 105 MPRDIQEAAAKAAAMVDFDSETVSFSNGEEGSDELGEIVELPNIEEDIRAESWNEFEFID 164

Query: 61  PVDWWRKPPFAAAETDFSCGFPDQNTIP 87
            VDWW  PPF AAE DF   F DQ+T P
Sbjct: 165 SVDWWGNPPFTAAEMDFCAVFSDQSTAP 192

[Close]
BLAST of Sed0005193 vs. ExPASy TrEMBL
Match: A0A6J1GBC8 (ethylene-responsive transcription factor TINY-like OS=Cucurbita moschata OX=3662 GN=LOC111452624 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.1e-24
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 1   MPTDIQAAEAKAAAMVDFD--LPT--ASIDEGGSDDLGEIVELPNIEEEFRAESWNEFQF 60
           MPTDIQAA AKAAAMVDFD  +PT  +S DE GSD+LGEIVELPNIEEE  AES N+F+ 
Sbjct: 97  MPTDIQAAAAKAAAMVDFDSTVPTTSSSNDEEGSDELGEIVELPNIEEEISAESLNKFEL 156

Query: 61  DDPVDWWRKPPFAAAETDFSCGFPDQNTIPTLIN 91
            D VDWW  PP+ AAETDF  GF DQ TIP + +
Sbjct: 157 VDSVDWWGNPPYTAAETDFFAGFSDQCTIPVIFD 190

[Close]
BLAST of Sed0005193 vs. ExPASy TrEMBL
Match: A0A6J1IP61 (ethylene-responsive transcription factor TINY-like OS=Cucurbita maxima OX=3661 GN=LOC111479284 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.1e-24
Identity = 62/89 (69.66%), Postives = 68/89 (76.40%), Query Frame = 0 

Query: 1   MPTDIQAAEAKAAAMVDFDLPT-----ASIDEGGSDDLGEIVELPNIEEEFRAESWNEFQ 60
           MP DIQAA AKAAAMVDFD  T     +S DEGGSD+LGEIVELPNIEE+ RAESW+EF+
Sbjct: 100 MPRDIQAAAAKAAAMVDFDTTTTASFSSSNDEGGSDELGEIVELPNIEEDIRAESWSEFE 159

Query: 61  FDDPVDWWRKPPFAAAETDFSCGFPDQNT 85
           F D VDWW  PPF AAE DF   F DQ+T
Sbjct: 160 FIDSVDWWGNPPFVAAEMDFCPLFADQST 188

The following BLAST results are available for this feature:
BLAST of Sed0005193 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6606753.17.6e-2567.02Ethylene-responsive transcription factor TINY, partial [Cucurbita argyrosperma s... [more]
KAG7036467.17.6e-2567.02hypothetical protein SDJN02_00084, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_008447541.13.8e-2469.32PREDICTED: ethylene-responsive transcription factor TINY [Cucumis melo] >KAA0050... [more]
XP_022949201.16.4e-2468.09ethylene-responsive transcription factor TINY-like [Cucurbita moschata][more]
XP_022979607.18.4e-2469.66ethylene-responsive transcription factor TINY-like [Cucurbita maxima][more]
BLAST of Sed0005193 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0005193 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAT81.1e-2463.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455130 PE=4 SV=1[more]
A0A5D3C9I71.8e-2469.32Ethylene-responsive transcription factor TINY OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S3BHN51.8e-2469.32ethylene-responsive transcription factor TINY OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A6J1GBC83.1e-2468.09ethylene-responsive transcription factor TINY-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1IP614.1e-2469.66ethylene-responsive transcription factor TINY-like OS=Cucurbita maxima OX=3661 G... [more]
BLAST of Sed0005193 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0005193.1Sed0005193.1mRNA