Sed0005088 (gene) Chayote v1

Overview


Name	Sed0005088
Type	gene
Organism	Sechium edule (Chayote v1)
Description	multiprotein bridging factor 1C
Location	LG11: 637240 .. 637635 (-)
RNA-Seq Expression	Sed0005088
Synteny	Sed0005088

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCCGGTTCCCAGGAGCCAGTGGTTCTACACAAGTCCAAGCCAAAGGCTCAGGACCTACGCGATCCAAAAACCGTGAACCAGGCGATCCGGTCAGGGATAGAGTCCAGACCGTGAAGAAGTTCGACGCCGGTTCGAACAGGAAAGCCGCGGCGGCGCCGGTGAACGCCAGGAAGCTGGAGGAAGGCACCGAGCCGGCGGAGGTGAGGCTGATGATCCAGAAGGCTCGGCTTGGGAAGAAGATGAGCCAAGCCGAGCTGGCGAATCAGATCAACGAGCGGACCCAGGTGGTTCAGGAGTATGAGAATGGGAAGGCTGTGCTGAACCAGGCCGTTTTGGGTAAGATCGAGATAGTTTTGGGCGTTAAACTTCGGGGTAAACCGGCCAAGTGA

mRNA sequence

ATGGCGAGCCGGTTCCCAGGAGCCAGTGGTTCTACACAAGTCCAAGCCAAAGGCTCAGGACCTACGCGATCCAAAAACCGTGAACCAGGCGATCCGGTCAGGGATAGAGTCCAGACCGTGAAGAAGTTCGACGCCGGTTCGAACAGGAAAGCCGCGGCGGCGCCGGTGAACGCCAGGAAGCTGGAGGAAGGCACCGAGCCGGCGGAGGTGAGGCTGATGATCCAGAAGGCTCGGCTTGGGAAGAAGATGAGCCAAGCCGAGCTGGCGAATCAGATCAACGAGCGGACCCAGGTGGTTCAGGAGTATGAGAATGGGAAGGCTGTGCTGAACCAGGCCGTTTTGGGTAAGATCGAGATAGTTTTGGGCGTTAAACTTCGGGGTAAACCGGCCAAGTGA

Coding sequence (CDS)

ATGGCGAGCCGGTTCCCAGGAGCCAGTGGTTCTACACAAGTCCAAGCCAAAGGCTCAGGACCTACGCGATCCAAAAACCGTGAACCAGGCGATCCGGTCAGGGATAGAGTCCAGACCGTGAAGAAGTTCGACGCCGGTTCGAACAGGAAAGCCGCGGCGGCGCCGGTGAACGCCAGGAAGCTGGAGGAAGGCACCGAGCCGGCGGAGGTGAGGCTGATGATCCAGAAGGCTCGGCTTGGGAAGAAGATGAGCCAAGCCGAGCTGGCGAATCAGATCAACGAGCGGACCCAGGTGGTTCAGGAGTATGAGAATGGGAAGGCTGTGCTGAACCAGGCCGTTTTGGGTAAGATCGAGATAGTTTTGGGCGTTAAACTTCGGGGTAAACCGGCCAAGTGA

Protein sequence

MASRFPGASGSTQVQAKGSGPTRSKNREPGDPVRDRVQTVKKFDAGSNRKAAAAPVNARKLEEGTEPAEVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGKAVLNQAVLGKIEIVLGVKLRGKPAK

Homology

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BLAST of Sed0005088 vs. NCBI nr
Match: XP_022965996.1 (multiprotein-bridging factor 1c [Cucurbita maxima] >XP_023537921.1 multiprotein-bridging factor 1c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.0 bits (354), Expect = 7.5e-30
Identity = 95/145 (65.52%), Postives = 99/145 (68.28%), Query Frame = 0


Query: 1   MASRFPGASGS--TQVQAKGSGPTRSKNREP---GDPVRD--RVQTVKKFDAGSNRKAAA 60
           M SRFPGA       V    S P     R+P      +R    V TVKKFDAGSN+KA A
Sbjct: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60

Query: 61  APVNARKLEEGTEPA-------EVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGK 120
           APVNARKLEEGTEPA       EVR  IQKARL KKMSQAELA QINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVLNQAVLGKIEIVLGVKLRGKPAK 132
           AV NQAVL K+E VLGVKLRGK  K
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 145

[Close]

BLAST of Sed0005088 vs. NCBI nr
Match: XP_038890461.1 (multiprotein-bridging factor 1c [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 7.5e-30
Identity = 94/145 (64.83%), Postives = 101/145 (69.66%), Query Frame = 0


Query: 1   MASRFPGASGS--TQVQAKGSGPTRSKNREP---GDPVRD--RVQTVKKFDAGSNRKAAA 60
           M SRFPGA       V    + P     R+P      +R    VQTVKKFDAGSN+KAAA
Sbjct: 1   MPSRFPGAIAQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAAVQTVKKFDAGSNKKAAA 60

Query: 61  APVNARKLEEGTEP-------AEVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGK 120
           APVNARKL+E TEP       AEVRL IQKARL KKMSQAELA QINERTQVVQEYENGK
Sbjct: 61  APVNARKLDELTEPAALDRVAAEVRLAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVLNQAVLGKIEIVLGVKLRGKPAK 132
           AV NQAVL K+E VLGVKLRG+  K
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]

BLAST of Sed0005088 vs. NCBI nr
Match: XP_022937454.1 (multiprotein-bridging factor 1c [Cucurbita moschata] >KAG6586426.1 Multiprotein-bridging factor 1c, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021281.1 Multiprotein-bridging factor 1c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.4 bits (350), Expect = 2.2e-29
Identity = 94/145 (64.83%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 1   MASRFPGASGS--TQVQAKGSGPTRSKNREP---GDPVRD--RVQTVKKFDAGSNRKAAA 60
           M SRFPGA       V    S P     R+P      +R    V TVKKFDAGSN+KA A
Sbjct: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60

Query: 61  APVNARKLEEGTEPA-------EVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGK 120
           APVNARKLEEGTEPA       EVR  IQKARL KKMSQAEL  QINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120

Query: 121 AVLNQAVLGKIEIVLGVKLRGKPAK 132
           AV NQAVL K+E VLGVKLRGK  K
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 145

[Close]

BLAST of Sed0005088 vs. NCBI nr
Match: XP_004139340.1 (multiprotein-bridging factor 1c [Cucumis sativus] >KGN60623.1 hypothetical protein Csa_019517 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 6.3e-29
Identity = 92/145 (63.45%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 1   MASRFPGASGS--TQVQAKGSGPTRSKNREP---GDPVRD--RVQTVKKFDAGSNRKAAA 60
           M SRFPGA       V    + P     R+P      +R    VQTVKKFDAG N+K  A
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVTA 60

Query: 61  APVNARKLEEGTEPA-------EVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGK 120
           APVNARKLEEGTEPA       EVR  IQKARL KKMSQAELA QINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVAVEVRQAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVLNQAVLGKIEIVLGVKLRGKPAK 132
           AV NQAVL K+E VLGVKLRG+  K
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]

BLAST of Sed0005088 vs. NCBI nr
Match: TYK10712.1 (multiprotein-bridging factor 1c [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-28
Identity = 91/145 (62.76%), Postives = 99/145 (68.28%), Query Frame = 0


Query: 1   MASRFPGASGS--TQVQAKGSGPTRSKNREP---GDPVRD--RVQTVKKFDAGSNRKAAA 60
           M SRFPGA       V    + P     R+P      +R    VQTVKKFDAG N+K AA
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 60

Query: 61  APVNARKLEEGTEPA-------EVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGK 120
           APVNARKL+EGTEPA       EVR  IQKAR+ KKMSQAELA QINERTQVVQEYENGK
Sbjct: 61  APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVLNQAVLGKIEIVLGVKLRGKPAK 132
           AV NQAVL K+E VLGVKLRG+  K
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]

BLAST of Sed0005088 vs. ExPASy Swiss-Prot
Match: Q9LV58 (Multiprotein-bridging factor 1c OS=Arabidopsis thaliana OX=3702 GN=MBF1C PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-28
Identity = 89/153 (58.17%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 1   MASRFPGASGSTQVQAKGSGPTRSKNREPGDPVRD------------RVQTVKKFDAGSN 60
           M SR+PGA     V          K+++    +RD             VQTVKKFDAGSN
Sbjct: 1   MPSRYPGA-----VTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSN 60

Query: 61  R--KAAAAPV-NARKLEEGTEP-------AEVRLMIQKARLGKKMSQAELANQINERTQV 120
           +  K+ A PV N +KLEE TEP       AEVRLMIQKARL KKMSQA+LA QINERTQV
Sbjct: 61  KKGKSTAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQV 120

Query: 121 VQEYENGKAVLNQAVLGKIEIVLGVKLRGKPAK 132
           VQEYENGKAV NQAVL K+E VLGVKLRGK  K
Sbjct: 121 VQEYENGKAVPNQAVLAKMEKVLGVKLRGKIGK 148

[Close]

BLAST of Sed0005088 vs. ExPASy Swiss-Prot
Match: Q9LXT3 (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana OX=3702 GN=MBF1B PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.8e-17
Identity = 48/100 (48.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 37  VQTVKKFDAGSNRKAAA-APVNARKLEEGTE-------PAEVRLMIQKARLGKKMSQAEL 96
           ++TV+KF+AGSN+ A++   +N +KL++ TE       P E++  I +AR  KK++Q++L
Sbjct: 42  IETVRKFNAGSNKAASSGTSLNTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQL 101

Query: 97  ANQINERTQVVQEYENGKAVLNQAVLGKIEIVLGVKLRGK 129
           A+ INE+ QV+QEYE+GKA+ NQ +L K+E  LG KLRGK
Sbjct: 102 AHLINEKPQVIQEYESGKAIPNQQILSKLERALGAKLRGK 141

[Close]

BLAST of Sed0005088 vs. ExPASy Swiss-Prot
Match: Q9SJI8 (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana OX=3702 GN=MBF1A PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.4e-16
Identity = 46/100 (46.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 37  VQTVKKFDAGSNRKAAA-APVNARKLEEGTE-------PAEVRLMIQKARLGKKMSQAEL 96
           ++TV+KF+AG+N+ A++   +N + L++ TE       P E++  I +AR  KK++Q++L
Sbjct: 42  IETVRKFNAGTNKAASSGTSLNTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQL 101

Query: 97  ANQINERTQVVQEYENGKAVLNQAVLGKIEIVLGVKLRGK 129
           A  INE+ QV+QEYE+GKA+ NQ +L K+E  LG KLRGK
Sbjct: 102 AQIINEKPQVIQEYESGKAIPNQQILSKLERALGAKLRGK 141

[Close]

BLAST of Sed0005088 vs. ExPASy Swiss-Prot
Match: Q6GPQ6 (Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis OX=8355 GN=edf1 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-13
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 0


Query: 10  GSTQVQAKGSGPTRSKNREPGDPVRDRVQTVKKFDAGSNRKAAAAPVNARKLEEGTE--- 69
           G T  QAK      +  R       + V+T KK+ AG N++      N  KL+  TE   
Sbjct: 16  GPTAAQAKSKQAITAAQRR-----GEEVETSKKWSAGQNKQHTITR-NTAKLDRETEELH 75

Query: 70  ----PAEVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGKAVLNQAVLGKIEIVLG 129
               P EV  +IQ+ R GK M+Q +LA +INE+ QV+ +YE GKA+ N  V+GKIE V+G
Sbjct: 76  HDRVPLEVGKVIQQGRQGKGMTQKDLATKINEKPQVIADYECGKAIPNNQVMGKIERVIG 135

[Close]

BLAST of Sed0005088 vs. ExPASy Swiss-Prot
Match: Q5ZMC0 (Endothelial differentiation-related factor 1 homolog OS=Gallus gallus OX=9031 GN=EDF1 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.6e-12
Identity = 49/127 (38.58%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 12  TQVQAKGSGPTRSKNREPGDPVRDR---VQTVKKFDAGSNRKAAAAPVNARKLEEGTE-- 71
           T ++ KG    ++K+++     + R   V+T KK+ AG N++      N  KL+  TE  
Sbjct: 10  TVLRKKGPSAAQAKSKQAVLAAQRRGEDVETSKKWAAGQNKQHFITK-NTAKLDRETEEL 69

Query: 72  -----PAEVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGKAVLNQAVLGKIEIVL 129
                P EV  +IQ+ R  K M+Q +LA +INE+ QV+ +YE+G+A+ N  V+GKIE  +
Sbjct: 70  HHDRVPLEVGKVIQQGRQSKGMTQKDLATKINEKPQVIADYESGRAIPNNQVMGKIERAI 129

[Close]

BLAST of Sed0005088 vs. ExPASy TrEMBL
Match: A0A6J1HN61 (multiprotein-bridging factor 1c OS=Cucurbita maxima OX=3661 GN=LOC111465714 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.6e-30
Identity = 95/145 (65.52%), Postives = 99/145 (68.28%), Query Frame = 0


Query: 1   MASRFPGASGS--TQVQAKGSGPTRSKNREP---GDPVRD--RVQTVKKFDAGSNRKAAA 60
           M SRFPGA       V    S P     R+P      +R    V TVKKFDAGSN+KA A
Sbjct: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60

Query: 61  APVNARKLEEGTEPA-------EVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGK 120
           APVNARKLEEGTEPA       EVR  IQKARL KKMSQAELA QINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVLNQAVLGKIEIVLGVKLRGKPAK 132
           AV NQAVL K+E VLGVKLRGK  K
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 145

[Close]

BLAST of Sed0005088 vs. ExPASy TrEMBL
Match: A0A6J1FB80 (multiprotein-bridging factor 1c OS=Cucurbita moschata OX=3662 GN=LOC111443860 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 94/145 (64.83%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 1   MASRFPGASGS--TQVQAKGSGPTRSKNREP---GDPVRD--RVQTVKKFDAGSNRKAAA 60
           M SRFPGA       V    S P     R+P      +R    V TVKKFDAGSN+KA A
Sbjct: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60

Query: 61  APVNARKLEEGTEPA-------EVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGK 120
           APVNARKLEEGTEPA       EVR  IQKARL KKMSQAEL  QINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120

Query: 121 AVLNQAVLGKIEIVLGVKLRGKPAK 132
           AV NQAVL K+E VLGVKLRGK  K
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 145

[Close]

BLAST of Sed0005088 vs. ExPASy TrEMBL
Match: A0A0A0LFV9 (HTH cro/C1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G004720 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.1e-29
Identity = 92/145 (63.45%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 1   MASRFPGASGS--TQVQAKGSGPTRSKNREP---GDPVRD--RVQTVKKFDAGSNRKAAA 60
           M SRFPGA       V    + P     R+P      +R    VQTVKKFDAG N+K  A
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVTA 60

Query: 61  APVNARKLEEGTEPA-------EVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGK 120
           APVNARKLEEGTEPA       EVR  IQKARL KKMSQAELA QINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVAVEVRQAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVLNQAVLGKIEIVLGVKLRGKPAK 132
           AV NQAVL K+E VLGVKLRG+  K
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]

BLAST of Sed0005088 vs. ExPASy TrEMBL
Match: A0A5D3CHG2 (Multiprotein-bridging factor 1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00210 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.2e-29
Identity = 91/145 (62.76%), Postives = 99/145 (68.28%), Query Frame = 0


Query: 1   MASRFPGASGS--TQVQAKGSGPTRSKNREP---GDPVRD--RVQTVKKFDAGSNRKAAA 60
           M SRFPGA       V    + P     R+P      +R    VQTVKKFDAG N+K AA
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 60

Query: 61  APVNARKLEEGTEPA-------EVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGK 120
           APVNARKL+EGTEPA       EVR  IQKAR+ KKMSQAELA QINERTQVVQEYENGK
Sbjct: 61  APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVLNQAVLGKIEIVLGVKLRGKPAK 132
           AV NQAVL K+E VLGVKLRG+  K
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]

BLAST of Sed0005088 vs. ExPASy TrEMBL
Match: A0A5A7V2S1 (Multiprotein-bridging factor 1c OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001220 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 6.8e-29
Identity = 91/145 (62.76%), Postives = 99/145 (68.28%), Query Frame = 0


Query: 1   MASRFPGASGS--TQVQAKGSGPTRSKNREP---GDPVRD--RVQTVKKFDAGSNRKAAA 60
           M SRFPGA       V    + P     R+P      +R    VQTVKKFDAG N+K AA
Sbjct: 68  MPSRFPGALSQDWEPVVLHKAKPKAQVLRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 127

Query: 61  APVNARKLEEGTEPA-------EVRLMIQKARLGKKMSQAELANQINERTQVVQEYENGK 120
           APVNARKL+EGTEPA       EVR  IQKAR+ KKMSQAELA QINERTQVVQEYENGK
Sbjct: 128 APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 187

Query: 121 AVLNQAVLGKIEIVLGVKLRGKPAK 132
           AV NQAVL K+E VLGVKLRG+  K
Sbjct: 188 AVPNQAVLAKMEKVLGVKLRGRSGK 212

[Close]

BLAST of Sed0005088 vs. TAIR 10
Match: AT3G24500.1 (multiprotein bridging factor 1C )

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-29
Identity = 89/153 (58.17%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 1   MASRFPGASGSTQVQAKGSGPTRSKNREPGDPVRD------------RVQTVKKFDAGSN 60
           M SR+PGA     V          K+++    +RD             VQTVKKFDAGSN
Sbjct: 1   MPSRYPGA-----VTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSN 60

Query: 61  R--KAAAAPV-NARKLEEGTEP-------AEVRLMIQKARLGKKMSQAELANQINERTQV 120
           +  K+ A PV N +KLEE TEP       AEVRLMIQKARL KKMSQA+LA QINERTQV
Sbjct: 61  KKGKSTAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQV 120

Query: 121 VQEYENGKAVLNQAVLGKIEIVLGVKLRGKPAK 132
           VQEYENGKAV NQAVL K+E VLGVKLRGK  K
Sbjct: 121 VQEYENGKAVPNQAVLAKMEKVLGVKLRGKIGK 148

[Close]

BLAST of Sed0005088 vs. TAIR 10
Match: AT3G58680.1 (multiprotein bridging factor 1B )

HSP 1 Score: 87.8 bits (216), Expect = 7.0e-18
Identity = 48/100 (48.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 37  VQTVKKFDAGSNRKAAA-APVNARKLEEGTE-------PAEVRLMIQKARLGKKMSQAEL 96
           ++TV+KF+AGSN+ A++   +N +KL++ TE       P E++  I +AR  KK++Q++L
Sbjct: 42  IETVRKFNAGSNKAASSGTSLNTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQL 101

Query: 97  ANQINERTQVVQEYENGKAVLNQAVLGKIEIVLGVKLRGK 129
           A+ INE+ QV+QEYE+GKA+ NQ +L K+E  LG KLRGK
Sbjct: 102 AHLINEKPQVIQEYESGKAIPNQQILSKLERALGAKLRGK 141

[Close]

BLAST of Sed0005088 vs. TAIR 10
Match: AT2G42680.1 (multiprotein bridging factor 1A )

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-17
Identity = 46/100 (46.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 37  VQTVKKFDAGSNRKAAA-APVNARKLEEGTE-------PAEVRLMIQKARLGKKMSQAEL 96
           ++TV+KF+AG+N+ A++   +N + L++ TE       P E++  I +AR  KK++Q++L
Sbjct: 42  IETVRKFNAGTNKAASSGTSLNTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQL 101

Query: 97  ANQINERTQVVQEYENGKAVLNQAVLGKIEIVLGVKLRGK 129
           A  INE+ QV+QEYE+GKA+ NQ +L K+E  LG KLRGK
Sbjct: 102 AQIINEKPQVIQEYESGKAIPNQQILSKLERALGAKLRGK 141

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BLAST of Sed0005088 vs. TAIR 10
Match: AT3G24500.2 (multiprotein bridging factor 1C )

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 40/100 (40.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 1  MASRFPGASGSTQVQAKGSGPTRSKNREPGDPVRD------------RVQTVKKFDAGSN 60
          M SR+PGA     V          K+++    +RD             VQTVKKFDAGSN
Sbjct: 1  MPSRYPGA-----VTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSN 60

Query: 61 R--KAAAAPV-NARKLEEGTEP-------AEVRLMIQKAR 79
          +  K+ A PV N +KLEE TEP       AEVRL +++ R
Sbjct: 61 KKGKSTAVPVINTKKLEEETEPAAMDRVKAEVRLCLRRWR 95

The following BLAST results are available for this feature:

BLAST of Sed0005088 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965996.1	7.5e-30	65.52	multiprotein-bridging factor 1c [Cucurbita maxima] >XP_023537921.1 multiprotein-...	[more]
XP_038890461.1	7.5e-30	64.83	multiprotein-bridging factor 1c [Benincasa hispida]	[more]
XP_022937454.1	2.2e-29	64.83	multiprotein-bridging factor 1c [Cucurbita moschata] >KAG6586426.1 Multiprotein-...	[more]
XP_004139340.1	6.3e-29	63.45	multiprotein-bridging factor 1c [Cucumis sativus] >KGN60623.1 hypothetical prote...	[more]
TYK10712.1	1.1e-28	62.76	multiprotein-bridging factor 1c [Cucumis melo var. makuwa]	[more]

BLAST of Sed0005088 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LV58	1.5e-28	58.17	Multiprotein-bridging factor 1c OS=Arabidopsis thaliana OX=3702 GN=MBF1C PE=1 SV...	[more]
Q9LXT3	9.8e-17	48.00	Multiprotein-bridging factor 1b OS=Arabidopsis thaliana OX=3702 GN=MBF1B PE=1 SV...	[more]
Q9SJI8	6.4e-16	46.00	Multiprotein-bridging factor 1a OS=Arabidopsis thaliana OX=3702 GN=MBF1A PE=2 SV...	[more]
Q6GPQ6	2.3e-13	42.06	Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis OX=8355 G...	[more]
Q5ZMC0	5.6e-12	38.58	Endothelial differentiation-related factor 1 homolog OS=Gallus gallus OX=9031 GN...	[more]

BLAST of Sed0005088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HN61	3.6e-30	65.52	multiprotein-bridging factor 1c OS=Cucurbita maxima OX=3661 GN=LOC111465714 PE=4...	[more]
A0A6J1FB80	1.1e-29	64.83	multiprotein-bridging factor 1c OS=Cucurbita moschata OX=3662 GN=LOC111443860 PE...	[more]
A0A0A0LFV9	3.1e-29	63.45	HTH cro/C1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G00...	[more]
A0A5D3CHG2	5.2e-29	62.76	Multiprotein-bridging factor 1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V2S1	6.8e-29	62.76	Multiprotein-bridging factor 1c OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Sed0005088 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24500.1	1.0e-29	58.17	multiprotein bridging factor 1C	[more]
AT3G58680.1	7.0e-18	48.00	multiprotein bridging factor 1B	[more]
AT2G42680.1	4.5e-17	46.00	multiprotein bridging factor 1A	[more]
AT3G24500.2	2.0e-04	40.00	multiprotein bridging factor 1C	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001387	Cro/C1-type helix-turn-helix domain	SMART	SM00530	mbf_short4	coord: 73..128 e-value: 1.2E-8 score: 44.8
IPR001387	Cro/C1-type helix-turn-helix domain	PFAM	PF01381	HTH_3	coord: 74..125 e-value: 8.0E-10 score: 38.6
IPR001387	Cro/C1-type helix-turn-helix domain	PROSITE	PS50943	HTH_CROC1	coord: 74..128 score: 12.191111
IPR001387	Cro/C1-type helix-turn-helix domain	CDD	cd00093	HTH_XRE	coord: 73..125 e-value: 3.0514E-8 score: 45.2366
IPR013729	Multiprotein bridging factor 1, N-terminal	PFAM	PF08523	MBF1	coord: 36..70 e-value: 8.8E-5 score: 22.9
IPR010982	Lambda repressor-like, DNA-binding domain superfamily	GENE3D	1.10.260.40		coord: 61..131 e-value: 2.3E-23 score: 83.5
IPR010982	Lambda repressor-like, DNA-binding domain superfamily	SUPERFAMILY	47413	lambda repressor-like DNA-binding domains	coord: 71..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR10245	ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1	coord: 36..130
None	No IPR available	PANTHER	PTHR10245:SF71	MULTIPROTEIN-BRIDGING FACTOR 1C	coord: 36..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005088.1	Sed0005088.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009873	ethylene-activated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009408	response to heat
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003713	transcription coactivator activity