Sed0005062 (gene) Chayote v1

Overview


Name	Sed0005062
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 3-like
Location	LG10: 36637003 .. 36643051 (-)
RNA-Seq Expression	Sed0005062
Synteny	Sed0005062

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTGTAGTAAGTTGAAGAGCGAACCGGGGCGAGGGTTTTGAGGTCATAAAAAAAAGGGTTTTCAGAATTCAGAAACCCTGAGAAGAGTTGTTACAGAGAAAGGCAGCCATGGAAGGCGGAGCTTCGTACCAGCGATTTCCGAAGGTGAAGATCCGAGAGCTCCGAGACGACTACGCCAAGTTCGAGCTTCGCGACACCGACGTCAGCATTGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCATCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCGGCGACGAGTTCATCGCCCACCGCCTCGGCCTCATCCCCCTCACCAGCGACCGCGCCATGTCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCCAGTGCGAGTTCTGCTCCGTCGAGTTTCATCTCAGGGCTAAGTGCCACTCCGACCAGACCCTGGATGTCACCAGTAAGGATCTCTACAGCTCTGATCATACCGTTGTTCCCGTTGATTTTTCGGATTCCGGTTCTGCTACGGGTGAAGCGCTTGATGCCAAGTATTTCCTCTTCCTCTCTCTCTCTCTATTACGCGTCTTTGTTCTGTTAATGGGATTTTAGATGATTTTCGTTACGATTGGTACCCATAGGCGTGGTCTGTACTGTTTAGAATGGATTAGGTATCAAATGGAGCCCCCTAAGGGTGAAGTTTTCGAGAATCTCCCATGACATTAATTTGTAGACACCTCCCGTGTCTCCATTCCTTCCATTTCTCCCGGTCCTTGACCTAGGAACAGGTATGGTTATCCTGATTATAGTTTTTCTAGGGATGGGCTAGCTTACGCGCACATTGACTAATATCACGGGATATAATGCATGACATGACCATACAAGGAAATTAATTCTTCTTGGTGGCTACCATAATTGAACCCATCACCTTATGCACCCAAGACCCTCTTTAACCACTTGAGCCACTCCATGATGGTTGGTTACCCCGATTATCTCTTTGATCACTTGAGCCACTCCATGATGGTTGGTTACCCTGATTATTGTGGAGTGGGATTTCTAGGTTTTTTTTTTAAAAAGAAGGTTTCAAATGGAGGGTGAAGCTTTGGGTGAGAATTACATCTTAGAGGTAGTCTATCATTTCTACTTAGGAGATTGACTTTCAAAGTTCTAATTCGTACGTTAAATGCAACATTGCTGCGTGGTTGTTAGAAAAGAATGATTCCTTGTTTTAATGGACGTTATCGTTTTTCTCTACTTCTTGGTTCACTCATTGGGTGGCAATTTCATTTTAGGTGAATAAATGGGGAAAAATGTGTCTGTTAGAATAAGTTTATGAGTTCATCTTCATGGTCCTGGATTTCGTGCTTTGGGTTTTATGCTTCATGTTCGATGATGTGAAAGAGTGATAACTTTTGGGACTCAAATAATCTGTTTGACATTTGCCTCTAAGAACCCACATTTACAAATTTATCACAACCCGGCTGAGTTTTACATAAAAAAAGAGATTGTTATAGGAAAAGATCTTTTAATCAAGGATCATTTTGGTTCATGAAATAATTGCTCAATTTGAGCTATTTTTGTTATAATTGTAGAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAATTGAGGCTGAGAGCCATAGCCAGGAAGGGCATTGGTAAAGATCATGCCAAATGGTCGCCTGCAGCAACTGTTACATTCATGTATGAGCCAAGCATTCACATCAATGAAGACCTAATGGAAACATTGACACTAGAGGAAAAGAAAGCTTGGGTTGAAAGTAGCCCAACCAGAGTATTTGATTTGGACCCTGTCACCCACCAGGTTCTTCTTATTAACCTCAATTTATTTTTCTTTTTTATTCGCTGCAGTGAACTTCTGAAATTTTAAACCTGCTCTCTTTAATATTATGGAATTGGCCAGAGGGTTGTGTTGAAGAGGCGATCATATTTATATTGAAATTATTTCTTATCCAAAGAAAAAGGAGGCAATCTTAACTGTATATTTTCTCTAATATCAGTTATCACTCTGCTGTTTGTGGTTTTTCATGCAAAGTTGGCATGTTAGTAAATTTCTAGAATAAATGATACTATTATGCTGTTTCTTTGCTTCTCGTAAGTGGGTCAACTAATATAAGAAGCAAGATAGATAATATTTTTGTGGTGGATCAATGATTTATGTTGGAATTTGGTTGCCTTAATTTACTACCTACTGCTTTGGTTAAATAGATAGTTTCAAGTTAATGTTTTTGTGGTTTAGGAGATAATAATCTAGTACTTCTTGTAATTTTGTGACATCGCAAGGAAATGCCTTGTTGTACTTAATTTCTTAGATCTCTTAGTATCACATGTTTGAAAATTGTTTGTCGGTGTTCTCTTCAAGTTTTGAGATGGTCTTTCTTATGTACCTTATTTACCTTACACTGTGAAAGTTTTTCTCCTCTTCTATTTTTTTTCTTTTGTAAATAGGAAAACTACATTTCTTTGTGATAAAATGTACAAAAAGTATCTGCACTGACAAGCTAATGGGAAAAAACCCTTCAAGTTAGCCCGGGAGGATTTGAACTGTAGTTAGAAAAAAGATGTGTATACACTTGGATAAGCAAGAGAAAGAATTAATTCATAAACATATTTCAAAGAAACCGCTTTGTTGCTTTTTATAACTGGGAAGTTGGAGCTTTGTTCACCTATACACAAGGTATCCGCGCCCGTCCCAAGGCCTTGATTTCGGAGACATCAAGGACTTTTATTTTTAAGCACACCCAATCATTTGAACCAGACCTTTAAGCCACTATGAGGAAGAGATCCTAAACCCTTACATTGAGGCGGCCCTTTGGGGAAAAGTCCACTTTGTTGTTACTTGTTAGAAGGGCCAGTTTTTTCATTCTAACCAAAAGACGAGAAAACGACCTATGTATATGTAGTAAATCAACTTGTATCTATGAAGGGGTATAAATAGAAAATGTGGTCTTAAGTTGAGCTCTCCATGCCCATAAATCATAATACACACGGTATTAAAGAGTTCAAATCTCAGAGGCATATAGGGGTCAGATACTATATGGTATGACCTGCTATGGAAATTGAAGAACCCATTTTTGGTAACAGTGCAAGGGTACTACTTTTTAATATTTTAGGGAGCAGCTCTGGCTATAATCTTATAGGTGCATCATGCATGGAGCATGGTTGATGGGGCACTATAATTGTTTTCTGTATGTGCTTCAGCTTTTTTGAAACCAGACCTATATGAGTTGCATTAAGACTAGCATCTATAATGCCGTTCTAAAAGTCGGGAGTGCTGCCGTGAGGTCGTTTTCTGTAATGGTGCCTTATGATTTTTTTTATAAGCACTTGAAGCCATAACAGCCTGTTGTATCTCCATTTCTAAAAAAATCGATTTCAAGGAGGTACTCTGTTCACGTGTAAATTGGTGTTTTAAAACTTAAGGGGTCGTTCACTTCATGGTAATCCAAGATTCCCATGGGATGGGAATTTGGATTACCACGTTTATTTAATAGGAATCGTAAATATTCCGGGCATCTTGAGATGCTGGGTATCTTAGGATGCCCATTTGAGAGGCATTTGGATGCCCTCCTGCAACATGGGTTTTTAGGATTCCCATGTATAGGGCATCCCGAATGACATTTTTACCCTTATTATTTATTAAAATTATATCTTATCAATTCCTATCAACTTTTTTTCCCATATTTTATGGGTAGTTTGTAACTTAAAATAAAATAATATGTTCTTTTTTAGTATATGATTATTATGCATGTATAAACAACTAACCATACATAATTAATTTTATTTATATTTTTCAAATATAATTGTCTACTTTTTTATATTTAGCGAATTTTATTGCTTATTCAACTAATGAATTTATTTTAGTTTTTTTATTAAATAAATTTATTTCATAAAATAATATTTAAATTAATAAAAAAAAAGATATGTTATATAAATTTTAATTATATAAATTAACGTGTAAATTAAGTTAGGAGGGTGATTAAGACATTTTTATAACGGTTTCTCTGATACCCATGAATTATTCCTACAAAACAAACACGATTATCTAAAAATGTCGGACATCTATCATTCCGGGTATCTATGATTCCGGATATCCAAGGATTCCGGTTATCCAGATTACCAGAAAGTTAACGGCCCCTAAAAGGGTGCACGTGCTTATGCTCAAGGCGCGAGCCTCACCTTGAATAGGCAAAGGCTCAGATAAAAAAAGTACGCCTTCATGTAATTAATTATGTAATATGAGTTTTTTTCTTTGAGTTTTACTAACCCGTTCAGGTTTTTTCTTTTCTTTATTAACGAAAAAATGTATGAAATAACATTTACTAATATCTTTGTTTAATATTCTCACTGCAATGATGCTATCTCTTCTTTATGAATATTCTTATATATAGCGTGCCTCCAGTGTTTTAAAAAGCGCAAGGCGTACCAAAAGGCGAGGTTTTTTTTTACATAAGGCACACTATATAAAAAAAACACAAAAAATATATATGTGTGTGTATACACAATAAAAATATTTCCATAGATATAAATGAAGTTTTAACAAAGAATCTATACAAAACATACATAAAATTCAACTATTAACCTTTCATTTTAAGCAAATGTTGTCTATGTGAGTTAAATAATTAAGTTATTTAAGATATTGAAATGTCTTGAATTAGTTATGTTGCGCTTCAAATGACTAAAACACAAAAAATTGAGGCATAAATCCTAAAAAACCCTAAGAAAACGCAAAAGCCCACAAGGTGCGCGCCTTTTGGCACCCATGGCTTCATGTAAGGCGACAAAAGGCGCGCGCCTAATTAACCGCGTCTCACTTTTCCCAAGCGAGATGCTAGAGGTGCGACTTGCACCCAGGCGCGCGCCTAGGCATGCCTTTTAAAACACTGCATGCCTCATAACAAAAGCCAGCTCTTTTTTTGCACATTGTGCCTAAACTTCGATAGGTTCTTGTACCTTAGTACACTGGATGGTGTAAAATAAGAGGGTCTTTCAATGAATCATAGATCTACATTTTTTTTTTGCAGTAATACCCAATCTTTTGAGGTATCTTTCTTACTTGTGGCTAATGAAAGTATGAAATACCCTTTCTTTTTAAAATATATAAGTGTTGTGCTAACTTATGCATACCTCGACTATTCTCATGGGACAAATTGCCTTGATCCTTCAAGGCAATCGATAGTAAATTAACTCCCAGGTAGGTGGTCATTATAGACTAAACCATAACTGTTTAGCTTCCAAAATTTTCTTTGATCACTTGGGGCCAACCGATGATGGTTAAAGTAAGTACAAAATACCAATTTCATGATTAAAACTTAGCCATTGTCTTGATTCTGCTGGCCAATGATTTTGTTTCTTCTTTTATTTGTCATTTAACTTGTGTTTCTTTGTCTATCTGATTCCTTGTACTAATTTATTTGTAAAGGTTGTGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATCAAGAAAGCAGAAGCTATGGGCAAAGCTGGGCTAGTGGATATCACTGCAAGAGAAGATAGTTTCATCTTCACAGTCGAATCCACGGGTGGAATCAAAGCTTCCCAGTTGATTCTCAATGCCATAGATATCCTGAAACAGAAGTTGGATGCCGTCCGCCTTTCAGATGACACAGTAGAAGCAGACGATCAGTTTGGTGAGTTAGGCGCACATATGCGAGGCGGATGATCCAGATTTCGGGCTTCCCCATATGTTTCTCGGAGGTTATACTGACTGTAATTTTGTATTCCTGGACAATCTGGTTTTCTGTACGGAATGAACCTGGCTTAGTGCAGTCTCTTTTCACATATTCGATGCATATCTTACTTCTGGATATATTAAAATGTCGTATCGTTGGCATTTTTTTGGTTCATCCTCATGTTTGACTTGTTTCAGTGTATGATAGTTAACTGTCCCCTAGGCGGACGACGGCAAAAGTGTGCTTCCTTTTAGGTCCTAGGTTTGTGAGAATTAATTTTTCAAACGATTCCAAATTTTGTCTAT

mRNA sequence

GGGTGTAGTAAGTTGAAGAGCGAACCGGGGCGAGGGTTTTGAGGTCATAAAAAAAAGGGTTTTCAGAATTCAGAAACCCTGAGAAGAGTTGTTACAGAGAAAGGCAGCCATGGAAGGCGGAGCTTCGTACCAGCGATTTCCGAAGGTGAAGATCCGAGAGCTCCGAGACGACTACGCCAAGTTCGAGCTTCGCGACACCGACGTCAGCATTGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCATCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCGGCGACGAGTTCATCGCCCACCGCCTCGGCCTCATCCCCCTCACCAGCGACCGCGCCATGTCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCCAGTGCGAGTTCTGCTCCGTCGAGTTTCATCTCAGGGCTAAGTGCCACTCCGACCAGACCCTGGATGTCACCAGTAAGGATCTCTACAGCTCTGATCATACCGTTGTTCCCGTTGATTTTTCGGATTCCGGTTCTGCTACGGGTGAAGCGCTTGATGCCAAAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAATTGAGGCTGAGAGCCATAGCCAGGAAGGGCATTGGTAAAGATCATGCCAAATGGTCGCCTGCAGCAACTGTTACATTCATGTATGAGCCAAGCATTCACATCAATGAAGACCTAATGGAAACATTGACACTAGAGGAAAAGAAAGCTTGGGTTGAAAGTAGCCCAACCAGAGTATTTGATTTGGACCCTGTCACCCACCAGGTTGTGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATCAAGAAAGCAGAAGCTATGGGCAAAGCTGGGCTAGTGGATATCACTGCAAGAGAAGATAGTTTCATCTTCACAGTCGAATCCACGGGTGGAATCAAAGCTTCCCAGTTGATTCTCAATGCCATAGATATCCTGAAACAGAAGTTGGATGCCGTCCGCCTTTCAGATGACACAGTAGAAGCAGACGATCAGTTTGGTGAGTTAGGCGCACATATGCGAGGCGGATGATCCAGATTTCGGGCTTCCCCATATGTTTCTCGGAGGTTATACTGACTGTAATTTTGTATTCCTGGACAATCTGGTTTTCTGTACGGAATGAACCTGGCTTAGTGCAGTCTCTTTTCACATATTCGATGCATATCTTACTTCTGGATATATTAAAATGTCGTATCGTTGGCATTTTTTTGGTTCATCCTCATGTTTGACTTGTTTCAGTGTATGATAGTTAACTGTCCCCTAGGCGGACGACGGCAAAAGTGTGCTTCCTTTTAGGTCCTAGGTTTGTGAGAATTAATTTTTCAAACGATTCCAAATTTTGTCTAT

Coding sequence (CDS)

ATGGAAGGCGGAGCTTCGTACCAGCGATTTCCGAAGGTGAAGATCCGAGAGCTCCGAGACGACTACGCCAAGTTCGAGCTTCGCGACACCGACGTCAGCATTGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTCCCCACCATCGCCATCGACCTCGTCGAGATCGAGGTCAACTCCTCCGTCCTCGGCGACGAGTTCATCGCCCACCGCCTCGGCCTCATCCCCCTCACCAGCGACCGCGCCATGTCCATGCGCTTCTCCCGCGACTGCGACGCCTGCGACGGCGACGGCCAGTGCGAGTTCTGCTCCGTCGAGTTTCATCTCAGGGCTAAGTGCCACTCCGACCAGACCCTGGATGTCACCAGTAAGGATCTCTACAGCTCTGATCATACCGTTGTTCCCGTTGATTTTTCGGATTCCGGTTCTGCTACGGGTGAAGCGCTTGATGCCAAAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAATTGAGGCTGAGAGCCATAGCCAGGAAGGGCATTGGTAAAGATCATGCCAAATGGTCGCCTGCAGCAACTGTTACATTCATGTATGAGCCAAGCATTCACATCAATGAAGACCTAATGGAAACATTGACACTAGAGGAAAAGAAAGCTTGGGTTGAAAGTAGCCCAACCAGAGTATTTGATTTGGACCCTGTCACCCACCAGGTTGTGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATCAAGAAAGCAGAAGCTATGGGCAAAGCTGGGCTAGTGGATATCACTGCAAGAGAAGATAGTTTCATCTTCACAGTCGAATCCACGGGTGGAATCAAAGCTTCCCAGTTGATTCTCAATGCCATAGATATCCTGAAACAGAAGTTGGATGCCGTCCGCCTTTCAGATGACACAGTAGAAGCAGACGATCAGTTTGGTGAGTTAGGCGCACATATGCGAGGCGGATGA

Protein sequence

MEGGASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVLGDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG

Homology

[Close]

BLAST of Sed0005062 vs. NCBI nr
Match: XP_008441761.1 (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])

HSP 1 Score: 598.6 bits (1542), Expect = 3.2e-167
Identity = 303/318 (95.28%), Postives = 310/318 (97.48%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           G+SYQRFPKVKIRELRDDYAKFELRDTD S+ANALRRVMIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           KDLYSSDHTVVPVDFSDS +ATGEALD KGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 123 KDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVTFMYEPSIHINEDLMETLTLEEK  WVES PTRVF+LDPVTHQV+VV+PEAYTYD
Sbjct: 183 PAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           DEVIKKAEAMGKAGLVDITAREDSFIFTVESTG IKASQLILNAIDILKQKLDAVRLSDD
Sbjct: 243 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMRGG
Sbjct: 303 TVEADDQFGELGAHMRGG 320

[Close]

BLAST of Sed0005062 vs. NCBI nr
Match: XP_004138895.1 (DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus] >KGN61343.1 hypothetical protein Csa_006771 [Cucumis sativus])

HSP 1 Score: 598.2 bits (1541), Expect = 4.2e-167
Identity = 303/318 (95.28%), Postives = 310/318 (97.48%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           G+SYQRFPKVKIRELRDDYAKFELRDTD S+ANALRRVMIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           KDLYSSDHTVVPVDFSDS +ATGEALD KGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 123 KDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVTFMYEPSIHINEDLMETLTLEEK+ WVES PTRVF+LD VTHQV+VVDPEAYTYD
Sbjct: 183 PAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           DEVIKKAEAMGKAGLVDITAREDSFIFTVESTG IKASQLILNAIDILKQKLDAVRLSDD
Sbjct: 243 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMRGG
Sbjct: 303 TVEADDQFGELGAHMRGG 320

[Close]

BLAST of Sed0005062 vs. NCBI nr
Match: XP_022927752.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >XP_022927753.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >XP_022988851.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita maxima] >XP_022988852.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita maxima] >XP_023530056.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita pepo subsp. pepo] >XP_023530057.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita pepo subsp. pepo] >KAG6588685.1 DNA-directed RNA polymerases II, IV and V subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 597.4 bits (1539), Expect = 7.1e-167
Identity = 302/318 (94.97%), Postives = 311/318 (97.80%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           GASYQRFPKVKIRELRDDYAKFEL DTDVS+ANALRRVMIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV+S
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVSS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           KDLYSSDHTVVPVDFSDS +A GEALD KGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 123 KDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVTFMYEPSIHINEDLMETLTLEEK +WVESSPT+VF+LDPVTHQV+VVDPEAYTYD
Sbjct: 183 PAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           DEVIKKAEAMGKAGLVDITA+EDSFIFTVESTG IKASQLILNAIDILKQKLDAVRLSDD
Sbjct: 243 DEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMRGG
Sbjct: 303 TVEADDQFGELGAHMRGG 320

[Close]

BLAST of Sed0005062 vs. NCBI nr
Match: XP_022147788.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia] >XP_022147789.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia])

HSP 1 Score: 591.3 bits (1523), Expect = 5.1e-165
Identity = 299/318 (94.03%), Postives = 308/318 (96.86%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           GASYQRFPKVKIRELRDDYAKFELRDTD S+ANALRRVMIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           KDL SSDHTVVPVDF+DS +A+GE LD KGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 123 KDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVTFMYEPSIHINEDLMETLTLEE+K WVES PTRVF++DP THQVVVVDPEAYTYD
Sbjct: 183 PAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           DEVIKKAEAMGKAGLVDITA+EDSFIFTVESTG IKASQLILNAIDILKQKLDAVRLSDD
Sbjct: 243 DEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMRGG
Sbjct: 303 TVEADDQFGELGAHMRGG 320

[Close]

BLAST of Sed0005062 vs. NCBI nr
Match: XP_038891253.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Benincasa hispida])

HSP 1 Score: 590.5 bits (1521), Expect = 8.7e-165
Identity = 298/318 (93.71%), Postives = 308/318 (96.86%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           G+SYQRFPKVKIRELRDDYAKFELRDTD S+ANALRRVMIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH+DQTLDVTS
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHNDQTLDVTS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           KDLYSSDHTVVPVDFSDS +ATGEALD+KGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 123 KDLYSSDHTVVPVDFSDSAAATGEALDSKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVTFMYEPSIHINEDLM+TLT EEK+ WVES PTRVF+ D VTHQV VVDPEAYTYD
Sbjct: 183 PAATVTFMYEPSIHINEDLMDTLTPEEKRTWVESCPTRVFEFDSVTHQVTVVDPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           DEVIKKAEAMGKAGLVDITA+EDSFIFTVESTG IKASQLILNAIDILKQKLDAVRLSDD
Sbjct: 243 DEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMRGG
Sbjct: 303 TVEADDQFGELGAHMRGG 320

[Close]

BLAST of Sed0005062 vs. ExPASy Swiss-Prot
Match: Q39211 (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3702 GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 3.2e-146
Identity = 261/318 (82.08%), Postives = 294/318 (92.45%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           GA+YQRFPK+KIREL+DDYAKFELR+TDVS+ANALRRVMI+EVPT+AIDLVEIEVNSSVL
Sbjct: 3   GATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDVTS
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           +DLYS+D TV PVDF+   S+  ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAKWS
Sbjct: 123 RDLYSADPTVTPVDFT-IDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVTFMYEP I INED+M+TL+ EEK   +ESSPT+VF +DPVT QVVVVDPEAYTYD
Sbjct: 183 PAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           +EVIKKAEAMGK GL++I+ ++DSFIFTVESTG +KASQL+LNAID+LKQKLDAVRLSDD
Sbjct: 243 EEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDD 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMRGG
Sbjct: 303 TVEADDQFGELGAHMRGG 319

[Close]

BLAST of Sed0005062 vs. ExPASy Swiss-Prot
Match: Q39212 (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702 GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 482.6 bits (1241), Expect = 3.4e-135
Identity = 245/318 (77.04%), Postives = 282/318 (88.68%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           G +YQRFP VKIREL+DDYAKFELR+TDVS+ANALRRVMI+EVPT+AI LV+IEVNSSVL
Sbjct: 3   GVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIA RL LIPLTS+RAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDVTS
Sbjct: 63  NDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           +DLYS+D TV PVDF+ S S+T ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAKWS
Sbjct: 123 RDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVT+MYEP I INE++M TLT EEK   +ESSPT+VF +DPVT QVVVVDPEAYTYD
Sbjct: 183 PAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           +EVIKKAEAMGK GL++I  + DSF+FTVESTG +KASQL+LNAIDILKQKLDA+RLSD+
Sbjct: 243 EEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSDN 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMR G
Sbjct: 303 TVEADDQFGELGAHMREG 319

[Close]

BLAST of Sed0005062 vs. ExPASy Swiss-Prot
Match: Q54DH7 (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689 GN=polr2c PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 8.4e-70
Identity = 145/293 (49.49%), Postives = 198/293 (67.58%), Query Frame = 0


Query: 9   RFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVLGDEFI 68
           R P+++I E+++D   F L +TD+S+ANALRRVMIAEVPT+ IDLVE E N+SVL DEFI
Sbjct: 10  RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69

Query: 69  AHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 128
           AHRLGLIPL SD      ++RDC   D   +C+ CSVE  L  KC  ++  DVTS DL S
Sbjct: 70  AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 129

Query: 129 SDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 188
            +  V+PV  S   S+  E    + I IVKLRRGQE++LRAIA+KG+GK+HAKWSP+   
Sbjct: 130 QNSAVIPVS-SQVTSSNSE----QEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVA 189

Query: 189 TFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDP--VTHQVVVVDPEAYTYDDEV 248
           T+ ++P I +N++ ++ LT ++K+ WV S PT+V+   P   T QV + DP    Y  E 
Sbjct: 190 TYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVYCLEC 249

Query: 249 IKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVR 300
            KKAE+ GK  LV +  ++D FIFTVES+G +K   ++L AI I+K+KL  ++
Sbjct: 250 KKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294

[Close]

BLAST of Sed0005062 vs. ExPASy Swiss-Prot
Match: Q3T0Q3 (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 9.7e-50
Identity = 119/290 (41.03%), Postives = 169/290 (58.28%), Query Frame = 0


Query: 7   YQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVLGDE 66
           Y   P V+I EL D+  KF + +TD+++AN++RRV IAEVP IAID V+I+ NSSVL DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 67  FIAHRLGLIPLTSDRAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 126
           FIAHRLGLIPLTSD  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 127 LYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 186
           L S+   V+PV   +  +   + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 187 ATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYDDE 246
           A V F Y+P     ++ +      + + W +S                      Y+  DE
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKSE---------------------YSELDE 242

Query: 247 VIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKL 296
              +A         D   + + F + VES G ++   ++L+A+  LK+KL
Sbjct: 243 DESQAP-------YDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of Sed0005062 vs. ExPASy Swiss-Prot
Match: P97760 (DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c PE=1 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 2.8e-49
Identity = 118/290 (40.69%), Postives = 169/290 (58.28%), Query Frame = 0


Query: 7   YQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVLGDE 66
           Y   P V+I EL ++  KF + +TD+++AN++RRV IAEVP IAID V+I+ NSSVL DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 67  FIAHRLGLIPLTSDRAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 126
           FIAHRLGLIPLTSD  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 127 LYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 186
           L S+   V+PV   +  +   + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 187 ATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYDDE 246
           A V F Y+P     ++ +      + + W +S                      Y+  DE
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKSE---------------------YSELDE 242

Query: 247 VIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKL 296
              +A         D   + + F + VES G ++   ++L+A+  LK+KL
Sbjct: 243 DESQAP-------YDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of Sed0005062 vs. ExPASy TrEMBL
Match: A0A1S3B3P9 (LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103485820 PE=3 SV=1)

HSP 1 Score: 598.6 bits (1542), Expect = 1.6e-167
Identity = 303/318 (95.28%), Postives = 310/318 (97.48%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           G+SYQRFPKVKIRELRDDYAKFELRDTD S+ANALRRVMIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           KDLYSSDHTVVPVDFSDS +ATGEALD KGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 123 KDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVTFMYEPSIHINEDLMETLTLEEK  WVES PTRVF+LDPVTHQV+VV+PEAYTYD
Sbjct: 183 PAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           DEVIKKAEAMGKAGLVDITAREDSFIFTVESTG IKASQLILNAIDILKQKLDAVRLSDD
Sbjct: 243 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMRGG
Sbjct: 303 TVEADDQFGELGAHMRGG 320

[Close]

BLAST of Sed0005062 vs. ExPASy TrEMBL
Match: A0A0A0LHS1 (RPOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=3 SV=1)

HSP 1 Score: 598.2 bits (1541), Expect = 2.0e-167
Identity = 303/318 (95.28%), Postives = 310/318 (97.48%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           G+SYQRFPKVKIRELRDDYAKFELRDTD S+ANALRRVMIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           KDLYSSDHTVVPVDFSDS +ATGEALD KGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 123 KDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVTFMYEPSIHINEDLMETLTLEEK+ WVES PTRVF+LD VTHQV+VVDPEAYTYD
Sbjct: 183 PAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           DEVIKKAEAMGKAGLVDITAREDSFIFTVESTG IKASQLILNAIDILKQKLDAVRLSDD
Sbjct: 243 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMRGG
Sbjct: 303 TVEADDQFGELGAHMRGG 320

[Close]

BLAST of Sed0005062 vs. ExPASy TrEMBL
Match: A0A6J1JIE7 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111486077 PE=3 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 3.5e-167
Identity = 302/318 (94.97%), Postives = 311/318 (97.80%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           GASYQRFPKVKIRELRDDYAKFEL DTDVS+ANALRRVMIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV+S
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVSS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           KDLYSSDHTVVPVDFSDS +A GEALD KGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 123 KDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVTFMYEPSIHINEDLMETLTLEEK +WVESSPT+VF+LDPVTHQV+VVDPEAYTYD
Sbjct: 183 PAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           DEVIKKAEAMGKAGLVDITA+EDSFIFTVESTG IKASQLILNAIDILKQKLDAVRLSDD
Sbjct: 243 DEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMRGG
Sbjct: 303 TVEADDQFGELGAHMRGG 320

[Close]

BLAST of Sed0005062 vs. ExPASy TrEMBL
Match: A0A6J1ELW4 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC111434562 PE=3 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 3.5e-167
Identity = 302/318 (94.97%), Postives = 311/318 (97.80%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           GASYQRFPKVKIRELRDDYAKFEL DTDVS+ANALRRVMIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV+S
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVSS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           KDLYSSDHTVVPVDFSDS +A GEALD KGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 123 KDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVTFMYEPSIHINEDLMETLTLEEK +WVESSPT+VF+LDPVTHQV+VVDPEAYTYD
Sbjct: 183 PAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           DEVIKKAEAMGKAGLVDITA+EDSFIFTVESTG IKASQLILNAIDILKQKLDAVRLSDD
Sbjct: 243 DEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMRGG
Sbjct: 303 TVEADDQFGELGAHMRGG 320

[Close]

BLAST of Sed0005062 vs. ExPASy TrEMBL
Match: A0A6J1D221 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Momordica charantia OX=3673 GN=LOC111016637 PE=3 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 2.5e-165
Identity = 299/318 (94.03%), Postives = 308/318 (96.86%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           GASYQRFPKVKIRELRDDYAKFELRDTD S+ANALRRVMIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           KDL SSDHTVVPVDF+DS +A+GE LD KGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
Sbjct: 123 KDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVTFMYEPSIHINEDLMETLTLEE+K WVES PTRVF++DP THQVVVVDPEAYTYD
Sbjct: 183 PAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           DEVIKKAEAMGKAGLVDITA+EDSFIFTVESTG IKASQLILNAIDILKQKLDAVRLSDD
Sbjct: 243 DEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMRGG
Sbjct: 303 TVEADDQFGELGAHMRGG 320

[Close]

BLAST of Sed0005062 vs. TAIR 10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 519.2 bits (1336), Expect = 2.3e-147
Identity = 261/318 (82.08%), Postives = 294/318 (92.45%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           GA+YQRFPK+KIREL+DDYAKFELR+TDVS+ANALRRVMI+EVPT+AIDLVEIEVNSSVL
Sbjct: 3   GATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDVTS
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           +DLYS+D TV PVDF+   S+  ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAKWS
Sbjct: 123 RDLYSADPTVTPVDFT-IDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVTFMYEP I INED+M+TL+ EEK   +ESSPT+VF +DPVT QVVVVDPEAYTYD
Sbjct: 183 PAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           +EVIKKAEAMGK GL++I+ ++DSFIFTVESTG +KASQL+LNAID+LKQKLDAVRLSDD
Sbjct: 243 EEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDD 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMRGG
Sbjct: 303 TVEADDQFGELGAHMRGG 319

[Close]

BLAST of Sed0005062 vs. TAIR 10
Match: AT2G15400.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 482.6 bits (1241), Expect = 2.4e-136
Identity = 245/318 (77.04%), Postives = 282/318 (88.68%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           G +YQRFP VKIREL+DDYAKFELR+TDVS+ANALRRVMI+EVPT+AI LV+IEVNSSVL
Sbjct: 3   GVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIA RL LIPLTS+RAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDVTS
Sbjct: 63  NDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           +DLYS+D TV PVDF+ S S+T ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAKWS
Sbjct: 123 RDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQVVVVDPEAYTYD 243
           PAATVT+MYEP I INE++M TLT EEK   +ESSPT+VF +DPVT QVVVVDPEAYTYD
Sbjct: 183 PAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTYD 242

Query: 244 DEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIKASQLILNAIDILKQKLDAVRLSDD 303
           +EVIKKAEAMGK GL++I  + DSF+FTVESTG +KASQL+LNAIDILKQKLDA+RLSD+
Sbjct: 243 EEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSDN 302

Query: 304 TVEADDQFGELGAHMRGG 322
           TVEADDQFGELGAHMR G
Sbjct: 303 TVEADDQFGELGAHMREG 319

[Close]

BLAST of Sed0005062 vs. TAIR 10
Match: AT2G15400.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 337.0 bits (863), Expect = 1.6e-92
Identity = 171/229 (74.67%), Postives = 199/229 (86.90%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           G +YQRFP VKIREL+DDYAKFELR+TDVS+ANALRRVMI+EVPT+AI LV+IEVNSSVL
Sbjct: 3   GVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVL 62

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 123
            DEFIA RL LIPLTS+RAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDVTS
Sbjct: 63  NDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTS 122

Query: 124 KDLYSSDHTVVPVDFSDSGSATGEALDAKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 183
           +DLYS+D TV PVDF+ S S+T ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAKWS
Sbjct: 123 RDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWS 182

Query: 184 PAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRVFDLDPVTHQV 233
           PAATVT+MYEP I INE++M TLT EEK   +ESSPT+VF +DPVT QV
Sbjct: 183 PAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQV 230

[Close]

BLAST of Sed0005062 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 126.3 bits (316), Expect = 4.3e-29
Identity = 101/319 (31.66%), Postives = 154/319 (48.28%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           G  Y  F KV +  L     +F++   D + ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 123
            DE +AHR+GLIP+ +D  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 124 SKDL-----------YSSDHTVVP---VDFSDSGSATGEALDAK------GIIIVKLRRG 183
           + DL            S + T  P     FS S  +  E  +         I+I KL  G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247

Query: 184 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRV 243
           QE+ L A A KGIGK HAKWSP  T  +   P + +  ++ + L     +  V   P  V
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307

Query: 244 FDLDPV---THQVVVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIK 299
           FD++ +     +  V  P   T   E ++  + +     VD+ + ++ FIF +ESTG + 
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367

[Close]

BLAST of Sed0005062 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 126.3 bits (316), Expect = 4.3e-29
Identity = 101/319 (31.66%), Postives = 154/319 (48.28%), Query Frame = 0


Query: 4   GASYQRFPKVKIRELRDDYAKFELRDTDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 63
           G  Y  F KV +  L     +F++   D + ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 64  GDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 123
            DE +AHR+GLIP+ +D  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 124 SKDL-----------YSSDHTVVP---VDFSDSGSATGEALDAK------GIIIVKLRRG 183
           + DL            S + T  P     FS S  +  E  +         I+I KL  G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247

Query: 184 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKKAWVESSPTRV 243
           QE+ L A A KGIGK HAKWSP  T  +   P + +  ++ + L     +  V   P  V
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307

Query: 244 FDLDPV---THQVVVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGGIK 299
           FD++ +     +  V  P   T   E ++  + +     VD+ + ++ FIF +ESTG + 
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367

The following BLAST results are available for this feature:

BLAST of Sed0005062 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441761.1	3.2e-167	95.28	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni...	[more]
XP_004138895.1	4.2e-167	95.28	DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus] >KGN61343....	[more]
XP_022927752.1	7.1e-167	94.97	DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >X...	[more]
XP_022147788.1	5.1e-165	94.03	DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia] >...	[more]
XP_038891253.1	8.7e-165	93.71	DNA-directed RNA polymerases II, IV and V subunit 3-like [Benincasa hispida]	[more]

BLAST of Sed0005062 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39211	3.2e-146	82.08	DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3...	[more]
Q39212	3.4e-135	77.04	DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702...	[more]
Q54DH7	8.4e-70	49.49	DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689...	[more]
Q3T0Q3	9.7e-50	41.03	DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1...	[more]
P97760	2.8e-49	40.69	DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c P...	[more]

BLAST of Sed0005062 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B3P9	1.6e-167	95.28	LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS...	[more]
A0A0A0LHS1	2.0e-167	95.28	RPOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=3 ...	[more]
A0A6J1JIE7	3.5e-167	94.97	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita maxima OX=...	[more]
A0A6J1ELW4	3.5e-167	94.97	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita moschata O...	[more]
A0A6J1D221	2.5e-165	94.03	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Momordica charantia ...	[more]

BLAST of Sed0005062 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15430.1	2.3e-147	82.08	DNA-directed RNA polymerase family protein	[more]
AT2G15400.1	2.4e-136	77.04	DNA-directed RNA polymerase family protein	[more]
AT2G15400.2	1.6e-92	74.67	DNA-directed RNA polymerase family protein	[more]
AT1G60850.2	4.3e-29	31.66	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	4.3e-29	31.66	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 22..301 e-value: 9.1E-94 score: 327.5
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 24..295 e-value: 4.3E-21 score: 75.3
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 13..294 e-value: 1.2E-86 score: 292.5
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 11..303
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 48..180 e-value: 1.2E-86 score: 292.5
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 47..184
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 54..183 e-value: 1.5E-32 score: 112.3
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 1..318
None	No IPR available	PANTHER	PTHR11800:SF15	BNAA09G08480D PROTEIN	coord: 1..318
None	No IPR available	CDD	cd07031	RNAP_II_RPB3	coord: 11..304 e-value: 1.25601E-129 score: 368.47
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 36..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005062.1	Sed0005062.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity