Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACATCAATTCCCACCTTCAAGCTTCATTTGCCCAATATGAAGCAATTAAATTGATAAGGAAGAATGATAGAGACAAGGATGGTCTTTACATTCCCTCTTCTCAAGCTTCGGTTGAATTCGGCAAAGGAGAATTTGGCAAAGAAAGAACTCCGTCGAGAATTCCGAAAGCTAACAACGAAATTCTACCCAAACTTGGTTCGAATCCTCTCACAAAATTGAAAGATCAATTAGAGGGCAAGGCTAAAAACTCTTCAACGAGGGTTGTCTTAGAAAGAACATCTAATATGCCACTTAGCAGGGAGCAAATGAAGGAAATTTTCAAACAACATGATAGCAATAATGATGGTTTCTTGAACATATGGGAGATAACAAAAGCATTTTATTTTTTTGGCTCAATTATTCCATTCAACAAAGCTCATTATGGTTTGGCCCTTGGAGATGCCAATAAAGATGGCCTTATAAGTGAAATTGAACTTGACCAACTAATCGATTACACAAGTATGGTCATGAAGAAGAAATAG
mRNA sequence
ATGCACATCAATTCCCACCTTCAAGCTTCATTTGCCCAATATGAAGCAATTAAATTGATAAGGAAGAATGATAGAGACAAGGATGGTCTTTACATTCCCTCTTCTCAAGCTTCGGTTGAATTCGGCAAAGGAGAATTTGGCAAAGAAAGAACTCCGTCGAGAATTCCGAAAGCTAACAACGAAATTCTACCCAAACTTGGTTCGAATCCTCTCACAAAATTGAAAGATCAATTAGAGGGCAAGGCTAAAAACTCTTCAACGAGGGTTGTCTTAGAAAGAACATCTAATATGCCACTTAGCAGGGAGCAAATGAAGGAAATTTTCAAACAACATGATAGCAATAATGATGGTTTCTTGAACATATGGGAGATAACAAAAGCATTTTATTTTTTTGGCTCAATTATTCCATTCAACAAAGCTCATTATGGTTTGGCCCTTGGAGATGCCAATAAAGATGGCCTTATAAGTGAAATTGAACTTGACCAACTAATCGATTACACAAGTATGGTCATGAAGAAGAAATAG
Coding sequence (CDS)
ATGCACATCAATTCCCACCTTCAAGCTTCATTTGCCCAATATGAAGCAATTAAATTGATAAGGAAGAATGATAGAGACAAGGATGGTCTTTACATTCCCTCTTCTCAAGCTTCGGTTGAATTCGGCAAAGGAGAATTTGGCAAAGAAAGAACTCCGTCGAGAATTCCGAAAGCTAACAACGAAATTCTACCCAAACTTGGTTCGAATCCTCTCACAAAATTGAAAGATCAATTAGAGGGCAAGGCTAAAAACTCTTCAACGAGGGTTGTCTTAGAAAGAACATCTAATATGCCACTTAGCAGGGAGCAAATGAAGGAAATTTTCAAACAACATGATAGCAATAATGATGGTTTCTTGAACATATGGGAGATAACAAAAGCATTTTATTTTTTTGGCTCAATTATTCCATTCAACAAAGCTCATTATGGTTTGGCCCTTGGAGATGCCAATAAAGATGGCCTTATAAGTGAAATTGAACTTGACCAACTAATCGATTACACAAGTATGGTCATGAAGAAGAAATAG
Protein sequence
MHINSHLQASFAQYEAIKLIRKNDRDKDGLYIPSSQASVEFGKGEFGKERTPSRIPKANNEILPKLGSNPLTKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKEIFKQHDSNNDGFLNIWEITKAFYFFGSIIPFNKAHYGLALGDANKDGLISEIELDQLIDYTSMVMKKK
Homology
BLAST of Sed0004971 vs. NCBI nr
Match:
XP_038886759.1 (probable calcium-binding protein CML11 [Benincasa hispida])
HSP 1 Score: 156.0 bits (393), Expect = 3.0e-34
Identity = 89/178 (50.00%), Postives = 117/178 (65.73%), Query Frame = 0
Query: 5 SHLQASFAQYEAIKLIRKNDRDKDGL--------YIPSSQASVEFGKGEFGKERTPSRIP 64
S LQA +A+ EA +LI+K DR+ DG+ ++ + +S + R IP
Sbjct: 4 SQLQA-WAENEANELIKKYDRNGDGVLAKEELQSFLHDTCSSTQLNNTRCVLSR---MIP 63
Query: 65 KANNEILPKLGSNPLTKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKEIFKQHDSNND 124
K NN ++ KL SN K QL K +NSST+ + + SN+P SREQ+KEIFK HDSN D
Sbjct: 64 KTNNNLVHKLSSNTHMNQKKQLRDKIQNSSTKALDRKQSNIPPSREQIKEIFKYHDSNKD 123
Query: 125 GFLNIWEITKAFYFFGSIIPFNKAHYGLALGDANKDGLISEIELDQLIDYTSMVMKKK 175
GFLNI E+TK F GS+IPF KAHY +A DA+KDGLISE+ELD+LIDYT+ ++KKK
Sbjct: 124 GFLNIRELTKTFGSLGSVIPFYKAHYAMAYADADKDGLISEVELDELIDYTNKIIKKK 177
BLAST of Sed0004971 vs. NCBI nr
Match:
XP_022951742.1 (probable calcium-binding protein CML11 [Cucurbita moschata])
HSP 1 Score: 148.3 bits (373), Expect = 6.2e-32
Identity = 85/174 (48.85%), Postives = 117/174 (67.24%), Query Frame = 0
Query: 5 SHLQASFAQYEAIKLIRKNDRDKDGLYIPSSQASVEF----GKGEFGKERTPSRIPKANN 64
S LQA +A+ +A +LI+K D++ DG+ + + V G + + S+IP+ N+
Sbjct: 4 SILQA-WAENKANELIKKYDKNGDGV-LTKEELQVFLRDVRGSTQLNNQGFLSKIPRTND 63
Query: 65 EILPKLGSNPLTKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKEIFKQHDSNNDGFLN 124
+ KL SNP T K Q++ KA SST+V+ E+ SN+PLSREQ+K+IFK +DS+ DGFLN
Sbjct: 64 KGAHKLNSNPRTNPKIQVQSKATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDGFLN 123
Query: 125 IWEITKAFYFFGSIIPFNKAHYGLALGDANKDGLISEIELDQLIDYTSMVMKKK 175
I E+TKAF F GSI PF KA Y + DAN DGLISE EL++LIDY ++KKK
Sbjct: 124 IREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLIDYAYKIIKKK 175
BLAST of Sed0004971 vs. NCBI nr
Match:
XP_022951799.1 (probable calcium-binding protein CML11 [Cucurbita moschata])
HSP 1 Score: 147.9 bits (372), Expect = 8.1e-32
Identity = 81/169 (47.93%), Postives = 114/169 (67.46%), Query Frame = 0
Query: 10 SFAQYEAIKLIRKNDRDKDGLYIPSSQASVEF----GKGEFGKERTPSRIPKANNEILPK 69
++A+ EA +L++K DR+ DG+ + + V G + + S+IPK N++ +
Sbjct: 6 AWAENEANELMKKYDRNGDGV-LTKEELQVFLRDVRGSTQLNHQGFLSKIPKTNDKGAHQ 65
Query: 70 LGSNPLTKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKEIFKQHDSNNDGFLNIWEIT 129
L SN T K Q++GK SST+V+ E+ SN+PLSREQ+K+IFK +DS+ DGFLNI E+T
Sbjct: 66 LSSNAHTNQKIQVQGKVTKSSTKVLSEKISNVPLSREQIKKIFKYYDSDKDGFLNIREVT 125
Query: 130 KAFYFFGSIIPFNKAHYGLALGDANKDGLISEIELDQLIDYTSMVMKKK 175
KAF F GSI PF KA Y + DAN DGLISE+EL++LIDY ++KKK
Sbjct: 126 KAFSFLGSINPFYKAQYAMTFADANNDGLISEVELEKLIDYACKIIKKK 173
BLAST of Sed0004971 vs. NCBI nr
Match:
XP_022951134.1 (uncharacterized protein LOC111454074 isoform X1 [Cucurbita moschata])
HSP 1 Score: 147.5 bits (371), Expect = 1.1e-31
Identity = 83/167 (49.70%), Postives = 106/167 (63.47%), Query Frame = 0
Query: 12 AQYEAIKLIRKNDRDKDGLYIPSS-QASVEFGKGEF---GKERTPSRIPKANNEILPKLG 71
A+ EA +L++K D + DG+ Q + +G + S+IPKA+N + K
Sbjct: 10 AEDEANRLMKKYDTNGDGMLTKEELQVFLHKARGSTQLNNNQGFVSKIPKASNNVAHKHS 69
Query: 72 SNPLTKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKEIFKQHDSNNDGFLNIWEITKA 131
SN K K Q++ K K SST+ + S + LSREQMKEIFK HDSN DGFL+I E+TKA
Sbjct: 70 SNSHMKHKKQVQDKGKKSSTKFLDGEMSKLQLSREQMKEIFKNHDSNKDGFLDIKEVTKA 129
Query: 132 FYFFGSIIPFNKAHYGLALGDANKDGLISEIELDQLIDYTSMVMKKK 175
F F GSI+PFNKAHY +A D N DGLISE ELD+LIDY S + KK
Sbjct: 130 FSFLGSILPFNKAHYAMAYADTNHDGLISEFELDKLIDYASKFINKK 176
BLAST of Sed0004971 vs. NCBI nr
Match:
XP_023538534.1 (putative calmodulin-like protein 6 isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 147.5 bits (371), Expect = 1.1e-31
Identity = 82/169 (48.52%), Postives = 108/169 (63.91%), Query Frame = 0
Query: 10 SFAQYEAIKLIRKNDRDKDGLYIPSS-QASVEFGKGEF---GKERTPSRIPKANNEILPK 69
++A+ EA +L++K D + DG+ Q + +G + S+IPKA+N ++ K
Sbjct: 8 TWAEDEANRLMKKYDTNGDGMLTKEELQVFLHKARGSTQLNNNQGFVSKIPKASNNVVHK 67
Query: 70 LGSNPLTKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKEIFKQHDSNNDGFLNIWEIT 129
SN K K Q++ K K SST+ + S + LSREQMKEIFK HDSN DGFL+I E+T
Sbjct: 68 HSSNSHMKHKKQVQDKGKKSSTKFLDGEMSKLQLSREQMKEIFKNHDSNKDGFLDIKEVT 127
Query: 130 KAFYFFGSIIPFNKAHYGLALGDANKDGLISEIELDQLIDYTSMVMKKK 175
KAF F GSI+PFNKAHY + D N DGLISE ELD+LIDY S + KK
Sbjct: 128 KAFGFLGSILPFNKAHYAMTYADTNHDGLISEFELDKLIDYASKFINKK 176
BLAST of Sed0004971 vs. ExPASy TrEMBL
Match:
A0A6J1GII5 (probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC111454483 PE=4 SV=1)
HSP 1 Score: 148.3 bits (373), Expect = 3.0e-32
Identity = 85/174 (48.85%), Postives = 117/174 (67.24%), Query Frame = 0
Query: 5 SHLQASFAQYEAIKLIRKNDRDKDGLYIPSSQASVEF----GKGEFGKERTPSRIPKANN 64
S LQA +A+ +A +LI+K D++ DG+ + + V G + + S+IP+ N+
Sbjct: 4 SILQA-WAENKANELIKKYDKNGDGV-LTKEELQVFLRDVRGSTQLNNQGFLSKIPRTND 63
Query: 65 EILPKLGSNPLTKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKEIFKQHDSNNDGFLN 124
+ KL SNP T K Q++ KA SST+V+ E+ SN+PLSREQ+K+IFK +DS+ DGFLN
Sbjct: 64 KGAHKLNSNPRTNPKIQVQSKATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDGFLN 123
Query: 125 IWEITKAFYFFGSIIPFNKAHYGLALGDANKDGLISEIELDQLIDYTSMVMKKK 175
I E+TKAF F GSI PF KA Y + DAN DGLISE EL++LIDY ++KKK
Sbjct: 124 IREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLIDYAYKIIKKK 175
BLAST of Sed0004971 vs. ExPASy TrEMBL
Match:
A0A6J1GJT8 (probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC111454533 PE=4 SV=1)
HSP 1 Score: 147.9 bits (372), Expect = 3.9e-32
Identity = 81/169 (47.93%), Postives = 114/169 (67.46%), Query Frame = 0
Query: 10 SFAQYEAIKLIRKNDRDKDGLYIPSSQASVEF----GKGEFGKERTPSRIPKANNEILPK 69
++A+ EA +L++K DR+ DG+ + + V G + + S+IPK N++ +
Sbjct: 6 AWAENEANELMKKYDRNGDGV-LTKEELQVFLRDVRGSTQLNHQGFLSKIPKTNDKGAHQ 65
Query: 70 LGSNPLTKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKEIFKQHDSNNDGFLNIWEIT 129
L SN T K Q++GK SST+V+ E+ SN+PLSREQ+K+IFK +DS+ DGFLNI E+T
Sbjct: 66 LSSNAHTNQKIQVQGKVTKSSTKVLSEKISNVPLSREQIKKIFKYYDSDKDGFLNIREVT 125
Query: 130 KAFYFFGSIIPFNKAHYGLALGDANKDGLISEIELDQLIDYTSMVMKKK 175
KAF F GSI PF KA Y + DAN DGLISE+EL++LIDY ++KKK
Sbjct: 126 KAFSFLGSINPFYKAQYAMTFADANNDGLISEVELEKLIDYACKIIKKK 173
BLAST of Sed0004971 vs. ExPASy TrEMBL
Match:
A0A6J1GHU7 (uncharacterized protein LOC111454074 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454074 PE=4 SV=1)
HSP 1 Score: 147.5 bits (371), Expect = 5.1e-32
Identity = 83/167 (49.70%), Postives = 106/167 (63.47%), Query Frame = 0
Query: 12 AQYEAIKLIRKNDRDKDGLYIPSS-QASVEFGKGEF---GKERTPSRIPKANNEILPKLG 71
A+ EA +L++K D + DG+ Q + +G + S+IPKA+N + K
Sbjct: 10 AEDEANRLMKKYDTNGDGMLTKEELQVFLHKARGSTQLNNNQGFVSKIPKASNNVAHKHS 69
Query: 72 SNPLTKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKEIFKQHDSNNDGFLNIWEITKA 131
SN K K Q++ K K SST+ + S + LSREQMKEIFK HDSN DGFL+I E+TKA
Sbjct: 70 SNSHMKHKKQVQDKGKKSSTKFLDGEMSKLQLSREQMKEIFKNHDSNKDGFLDIKEVTKA 129
Query: 132 FYFFGSIIPFNKAHYGLALGDANKDGLISEIELDQLIDYTSMVMKKK 175
F F GSI+PFNKAHY +A D N DGLISE ELD+LIDY S + KK
Sbjct: 130 FSFLGSILPFNKAHYAMAYADTNHDGLISEFELDKLIDYASKFINKK 176
BLAST of Sed0004971 vs. ExPASy TrEMBL
Match:
A0A6J1GIQ8 (probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC111454532 PE=4 SV=1)
HSP 1 Score: 146.7 bits (369), Expect = 8.7e-32
Identity = 85/174 (48.85%), Postives = 116/174 (66.67%), Query Frame = 0
Query: 5 SHLQASFAQYEAIKLIRKNDRDKDGLYIPSSQASVEF----GKGEFGKERTPSRIPKANN 64
S LQA +A+ EA +L++K DR+ DG+ + + V G + +R S+IPK N+
Sbjct: 4 SILQA-WAENEANELMKKYDRNGDGV-LTKEELQVFLRDVRGSTQLNHQRFLSKIPKTND 63
Query: 65 EILPKLGSNPLTKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKEIFKQHDSNNDGFLN 124
+ +L SN T K Q++G A SST+V+ E+ SN+PLSREQ+K+IFK +DS+ DGFLN
Sbjct: 64 KGAHQLSSNAHTNPKIQVQGTATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDGFLN 123
Query: 125 IWEITKAFYFFGSIIPFNKAHYGLALGDANKDGLISEIELDQLIDYTSMVMKKK 175
E+TKAF F GSI PF KA Y + DAN DGLISE EL++LIDY ++KKK
Sbjct: 124 TREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLIDYACKIIKKK 175
BLAST of Sed0004971 vs. ExPASy TrEMBL
Match:
A0A6J1KUA8 (calcium-binding protein H-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496471 PE=4 SV=1)
HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 82/169 (48.52%), Postives = 107/169 (63.31%), Query Frame = 0
Query: 10 SFAQYEAIKLIRKNDRDKDGLYIPSSQASVEFGKGEFGKERTPS-----RIPKANNEILP 69
++A+ EA +L++K D + DG+ + + V K K+ + +IPKANN +
Sbjct: 8 TWAEDEANRLMKKYDTNGDGM-LTKEELQVFLHKARGSKQLNNNQGFVFKIPKANNNVAH 67
Query: 70 KLGSNPLTKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKEIFKQHDSNNDGFLNIWEI 129
+ SN K K Q++ K K SST+ S + LSREQMKEIFK HDSN DGFL+I E+
Sbjct: 68 EHSSNSHMKHKKQVQDKGKKSSTKFFDGEMSKLRLSREQMKEIFKNHDSNKDGFLDIKEV 127
Query: 130 TKAFYFFGSIIPFNKAHYGLALGDANKDGLISEIELDQLIDYTSMVMKK 174
TKAF F GSI+PFNKAHY +A D N DGLISE ELD+LIDY S + K
Sbjct: 128 TKAFGFLGSILPFNKAHYAMAYADTNHDGLISEFELDKLIDYASKFINK 175
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038886759.1 | 3.0e-34 | 50.00 | probable calcium-binding protein CML11 [Benincasa hispida] | [more] |
XP_022951742.1 | 6.2e-32 | 48.85 | probable calcium-binding protein CML11 [Cucurbita moschata] | [more] |
XP_022951799.1 | 8.1e-32 | 47.93 | probable calcium-binding protein CML11 [Cucurbita moschata] | [more] |
XP_022951134.1 | 1.1e-31 | 49.70 | uncharacterized protein LOC111454074 isoform X1 [Cucurbita moschata] | [more] |
XP_023538534.1 | 1.1e-31 | 48.52 | putative calmodulin-like protein 6 isoform X1 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GII5 | 3.0e-32 | 48.85 | probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC11145... | [more] |
A0A6J1GJT8 | 3.9e-32 | 47.93 | probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC11145... | [more] |
A0A6J1GHU7 | 5.1e-32 | 49.70 | uncharacterized protein LOC111454074 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1GIQ8 | 8.7e-32 | 48.85 | probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC11145... | [more] |
A0A6J1KUA8 | 1.5e-31 | 48.52 | calcium-binding protein H-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114... | [more] |
Match Name | E-value | Identity | Description | |