Sed0004738 (gene) Chayote v1

Overview


Name	Sed0004738
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG02: 1859152 .. 1862313 (-)
RNA-Seq Expression	Sed0004738
Synteny	Sed0004738

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATAAACACGAATAGAGCACATAGCTTGAGTCCATACTTGGACCTCGGATGCCAACTCGTGGTCTTAGTCCGAATAATCCACCACACAATACGCCCTATACGAGAAACAAGTCCCGACCTCACTGTCTCATTGTCCGAATGAAAGGTACACTAGCTCAAGATCCCGAGGAGCTCTCCTGTCGGCTTTGTAATGAGCGTAAGCATGCACCGCGCGCCATCGCAGACTATGGGGGTGTCGGCCCAGAGGCAAGCCGCGCATGTCCACCACCACGCCTAACTAAATCTTTGGATCGGTGTCACCGACATAGGGTGTGAGACTCGACACGTGAACTATGTCACCGCTCCACCGCACTGGGGCTAAGGAACGGGTCGTGGTAGGCTTACACCGTAGCGCGCCTTACCTTAACAGTGGCAATCAAGGGCTACGCCGAACACGCCGAGGACGTGCCGATCGCCGGGGGCGAGGCAATGCCAAGTCATCATCCCGACCGCTGGGGCATTTAACGATCGCCACCCTCACCCAAGATTGCGGGGCCACCGTTAGGGTTAGCTATTCCCTAACGGGATCAGGGACGGAGCTCCATCTCGTACGTCCCTGTAGGGGATGCAAGGTTCGTTAATCACCCGACCCGGATGATGCTATCTACCTGCCACTCTAGCCTGCCTTAGCAATCAGCAAACAATTCAATAAAATCCAATACGTGCTCAATAAGAATACAACGAACCTAGCATTATACTACGAAGCAAGAACAGATACGAGCATGCTAGAATGGAACAACCTAGCATGGATTAACATGAGAATTAACCAGGAAAATCATGCCAATCAGGAATTCAGAATAGAGCACTTAGCTACACATGTCAATAAACACAAACAAGCAATCAATCAGCAATCACATATAATATCGCAGGGTCCACACAACTCCGGTAAGAAATCCTTACTTTGGTCGGGGGCGATTACACGAAAACCTAAGCTGCGAATGATCTCGAACTAGCTACCGGGAACCTATCAATCACAACAATAATCACACAATAGGCCTAAATACAATAAAATAAACAGGGTTCAGCTCGGGAGCAACTCACGAGGCGCGACGGACACACGAACGAGCCGATTGCACGAGCGAGGCAGCAATAGGGCTGGCTGGGCGCGGACGGGCGCGCGGGCGCGGCGTGGCTCAGCGGGCTGGGATGCGACAGGGCACGCGACACGGCTTCTGTGCGCGGGCGAAGGGCGAGCTGGGGCGATTCCGGCGCGACGGAGAAGAGAAGACGAACTCGGGCGAATTGACGAGAATTGACGAGCGATTTGCTGCTGGTTGAATTCCCCTACACTAGCTGCACAAAATCCACACAGCAAATCACTTCGACTCGGCCGGAAATATCGAACCAGAAACAGGGGAAAAGGTGGACGGAAAAGAGAAGGAGAAGAAGAGAAAGAGAAACTTACCGGCTGCTCGGGAATTGGCTTCGGATTTGAGAGAAAGAGCTTGACGAATTGCTGGTCGGCGACGGAAGAGAAAATCGCGAAGAAGATCGCAGTCGGTTGGAGGAAGAATCGCGAAGAAGAAAAAGAACGAGGGAGAAGGCTTCGGGCGGGCTCTGTTTTAAACCGAAGGCATCTCAAAACAAGCATAAGTACAATATGGCGCGCTCAGATTCACAAGAGCGCTCGGTGGCTCAAGTGGCAAAGCCACCCAACTAGCTTCCCAAGCACCCCTGGTTCGAAACCCGCTCGACGCGTTATTTAATTCCCTATTTCTTTTTGCATTTTACCAAGCCCAAATACCTTCACAAAGCTTCCCGATCCCATTCAAATCATCTCATAATTTTTTTGGCAAATAGAAAAGACATAACAGGCCCTGTCGGCCTGACCAAATTACCAAAATGCCCCTAGGGCAAACCGGGAAGACCAGGATGAAATTCCGGGCTGTTACAGGAATTTAGGTCCATATTGAGTTAAGCCTAAATTAATGTATTGGGCCCAAAAATTCACAAGGCTCCAACCCAATGAGATCCAAAGATGCATGAGGCTCCAACCCAATGGTCAAGCTAGATCCATAAGGCCGAAGACCAAGGTTTGGGCCCTAAAGCCCATGAAGCCCAAGTCCACAAGCCCGTGGGAACTCTATAAATAGAGAGCTCTCCCTCATTTGCAAAGAACCTAAACTGAGAACTACAGACTAAAGACTCATAAACTCGGGAGTTTTCAGAAATTCAGAACTCAGAGCATCCAACCATCCAAATCCTCAAGCCCTCAAGATCAGTCAGCGAGAACTCTCAACGACAAAGGCTTCCTCAAACCGATCGTGTCTTCACCAACATACTGAAGATTCGATCATCCTCCATCTGAGAACAAGCTCACAAGCCCTCAGATCGACATCTTCAAAATCCCCATCCCGAGAGAAAGAATCAGAGGACAAATATTAGAGATTGTAACACGCGCATAAATCAAATCAATAAAGATTCAAATTCATTTACACGTGTCTCATTTATGTTTATTTCTGGAAATCTCGTGTGAACAAATTGGCACGCCCAGTGGGACCATCTCTACCTCTCATCTCTTACTCTCTCTCTCAAGAAAGCATGAATCCCAAAGAAATTTCCTCCAAGACTACTGCTTCAAGTGATTCCTATATGGGACATGTTCGCGAAGCTGTTCAAAAGAAATCAACCACAAAGAAAGCCAGACACCTGTTATCGAGAAACAATATTGAAGCGCGTGATAGAATCTTCTAAAGACTACATCTCTACTGCAAAAGATTTTGAGTTTGGAAAATATACTCTTCCTTACCATGATCAGAGCAAGATTTCAAATCCTGATGTGATGTCCGTGATGATGACTAATACGTCTACTAGGAAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTGGAAGTAGTAAAAGAAAAGAATGATGAAATCACTTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGTCTACCCATACTGTCATTAACAAAGACAAGGGGAAATCCATCATGCAAGAAGATCACTCACAGCATAATGCTTCAATTGCTACACTATCTGTTCAACAGTTGCAAGATATGATTATGACCTTAATCATAGCACAATATGGTGGACCTGCTCAGAGCTCTTTATTGTACTCGAAGCCAACTGGTTAA

mRNA sequence

ATGAGTATAAACACGAATAGAGCACATAGCTTGAGTCCATACTTGGACCTCGGATGCCAACTCGTGGTCTTAGTCCGAATAATCCACCACACAATACGCCCTATACGAGAAACAAGCGCGACGGACACACGAACGAGCCGATTGCACGAGCGAGGCAGCAATAGGGCTGAGCTTGACGAATTGCTGGTCGGCGACGGAAGAGAAAATCGCGAAGAAGATCGCAGTCGGTTGGAGGAAGAATCGCGAAGAAGAAAAAGAACGAGGGAGAAGGCTTCGGGCGGGCTCTTTTTCAGAAATTCAGAACTCAGAGCATCCAACCATCCAAATCCTCAAGCCCTCAAGATCAGTCAGCGAGAACTCTCAACGACAAAGGCTTCCTCAAACCGATCGTGTCTTCACCAACATACTGAAGATTCGATCATCCTCCATCTGAGAACAAGCTCACAAATTTCAAATCCTGATGTGATGTCCGTGATGATGACTAATACGTCTACTAGGAAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTGGAAGTAGTAAAAGAAAAGAATGATGAAATCACTTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGTCTACCCATACTGTCATTAACAAAGACAAGGGGAAATCCATCATGCAAGAAGATCACTCACAGCATAATGCTTCAATTGCTACACTATCTGTTCAACAGTTGCAAGATATGATTATGACCTTAATCATAGCACAATATGGTGGACCTGCTCAGAGCTCTTTATTGTACTCGAAGCCAACTGGTTAA

Coding sequence (CDS)

ATGAGTATAAACACGAATAGAGCACATAGCTTGAGTCCATACTTGGACCTCGGATGCCAACTCGTGGTCTTAGTCCGAATAATCCACCACACAATACGCCCTATACGAGAAACAAGCGCGACGGACACACGAACGAGCCGATTGCACGAGCGAGGCAGCAATAGGGCTGAGCTTGACGAATTGCTGGTCGGCGACGGAAGAGAAAATCGCGAAGAAGATCGCAGTCGGTTGGAGGAAGAATCGCGAAGAAGAAAAAGAACGAGGGAGAAGGCTTCGGGCGGGCTCTTTTTCAGAAATTCAGAACTCAGAGCATCCAACCATCCAAATCCTCAAGCCCTCAAGATCAGTCAGCGAGAACTCTCAACGACAAAGGCTTCCTCAAACCGATCGTGTCTTCACCAACATACTGAAGATTCGATCATCCTCCATCTGAGAACAAGCTCACAAATTTCAAATCCTGATGTGATGTCCGTGATGATGACTAATACGTCTACTAGGAAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTGGAAGTAGTAAAAGAAAAGAATGATGAAATCACTTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGTCTACCCATACTGTCATTAACAAAGACAAGGGGAAATCCATCATGCAAGAAGATCACTCACAGCATAATGCTTCAATTGCTACACTATCTGTTCAACAGTTGCAAGATATGATTATGACCTTAATCATAGCACAATATGGTGGACCTGCTCAGAGCTCTTTATTGTACTCGAAGCCAACTGGTTAA

Protein sequence

MSINTNRAHSLSPYLDLGCQLVVLVRIIHHTIRPIRETSATDTRTSRLHERGSNRAELDELLVGDGRENREEDRSRLEEESRRRKRTREKASGGLFFRNSELRASNHPNPQALKISQRELSTTKASSNRSCLHQHTEDSIILHLRTSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVESTHTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMIMTLIIAQYGGPAQSSLLYSKPTG

Homology

[Close]

BLAST of Sed0004738 vs. NCBI nr
Match: KAA0058295.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-25
Identity = 69/121 (57.02%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 146 TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE 205
           +S ++S+P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  E
Sbjct: 40  SSEEMSHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAE 99

Query: 206 ST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMIMTLIIAQYGGPAQSSLLYSK 265
           S+  H V N DKGK++MQE   Q++ SIA+LSVQQLQ+MI + I  QYGGPAQ+  LYSK
Sbjct: 100 SSHKHIVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSK 159

[Close]

BLAST of Sed0004738 vs. NCBI nr
Match: KAA0059562.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 6.6e-25
Identity = 68/121 (56.20%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 146 TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE 205
           ++ ++  P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  E
Sbjct: 72  SNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAE 131

Query: 206 ST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMIMTLIIAQYGGPAQSSLLYSK 265
           S+  HTV N DKGK++MQE   Q++ SIA+LSVQQLQ+MI + I  QYGGPAQ+  LYSK
Sbjct: 132 SSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSK 191

[Close]

BLAST of Sed0004738 vs. NCBI nr
Match: TYK03695.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 6.6e-25
Identity = 68/121 (56.20%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 146 TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE 205
           ++ ++  P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  E
Sbjct: 72  SNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAE 131

Query: 206 ST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMIMTLIIAQYGGPAQSSLLYSK 265
           S+  HTV N DKGK++MQE   Q++ SIA+LSVQQLQ+MI + I  QYGGPAQ+  LYSK
Sbjct: 132 SSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSK 191

[Close]

BLAST of Sed0004738 vs. NCBI nr
Match: KAA0047735.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 8.6e-25
Identity = 69/121 (57.02%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 146 TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE 205
           +S ++  P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  E
Sbjct: 72  SSEEMPYPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAE 131

Query: 206 ST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMIMTLIIAQYGGPAQSSLLYSK 265
           S+  HTV N DKGK++MQE   Q++ SIA+LSVQQLQ+MI + I  QYGGPAQ+  LYSK
Sbjct: 132 SSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSK 191

[Close]

BLAST of Sed0004738 vs. NCBI nr
Match: KAA0050518.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 8.6e-25
Identity = 68/122 (55.74%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 145 RTSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVV 204
           R++ ++  P++MSVM+T+  T ++R+AE EKK++ML++ V+EK+ EI  LKN IESRD  
Sbjct: 71  RSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEEKDFEIALLKNHIESRDAA 130

Query: 205 ES--THTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMIMTLIIAQYGGPAQSSLLYS 264
           ES  THT+ N +KGK+IMQE   Q++ SIA+LSVQQLQ+MI   I  QYGGPAQ+  LYS
Sbjct: 131 ESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTFSLYS 190

[Close]

BLAST of Sed0004738 vs. ExPASy TrEMBL
Match: A0A5A7UXF0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006290 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-25
Identity = 69/121 (57.02%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 146 TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE 205
           +S ++S+P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  E
Sbjct: 40  SSEEMSHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAE 99

Query: 206 ST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMIMTLIIAQYGGPAQSSLLYSK 265
           S+  H V N DKGK++MQE   Q++ SIA+LSVQQLQ+MI + I  QYGGPAQ+  LYSK
Sbjct: 100 SSHKHIVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSK 159

[Close]

BLAST of Sed0004738 vs. ExPASy TrEMBL
Match: A0A5A7UUI7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00790 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-25
Identity = 68/121 (56.20%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 146 TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE 205
           ++ ++  P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  E
Sbjct: 72  SNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAE 131

Query: 206 ST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMIMTLIIAQYGGPAQSSLLYSK 265
           S+  HTV N DKGK++MQE   Q++ SIA+LSVQQLQ+MI + I  QYGGPAQ+  LYSK
Sbjct: 132 SSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSK 191

[Close]

BLAST of Sed0004738 vs. ExPASy TrEMBL
Match: A0A5D3BX77 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00570 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-25
Identity = 68/121 (56.20%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 146 TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE 205
           ++ ++  P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  E
Sbjct: 72  SNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAE 131

Query: 206 ST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMIMTLIIAQYGGPAQSSLLYSK 265
           S+  HTV N DKGK++MQE   Q++ SIA+LSVQQLQ+MI + I  QYGGPAQ+  LYSK
Sbjct: 132 SSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSK 191

[Close]

BLAST of Sed0004738 vs. ExPASy TrEMBL
Match: A0A5A7U259 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G002540 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-25
Identity = 69/121 (57.02%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 146 TSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE 205
           +S ++  P++MSVM+TN  T + R+AE EKK++ML++VV+E++ EI  LKN IESRD  E
Sbjct: 72  SSEEMPYPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAE 131

Query: 206 ST--HTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMIMTLIIAQYGGPAQSSLLYSK 265
           S+  HTV N DKGK++MQE   Q++ SIA+LSVQQLQ+MI + I  QYGGPAQ+  LYSK
Sbjct: 132 SSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSK 191

[Close]

BLAST of Sed0004738 vs. ExPASy TrEMBL
Match: A0A5A7U5H1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001620 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-25
Identity = 68/122 (55.74%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 145 RTSSQISNPDVMSVMMTNTSTRKERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVV 204
           R++ ++  P++MSVM+T+  T ++R+AE EKK++ML++ V+EK+ EI  LKN IESRD  
Sbjct: 71  RSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEEKDFEIALLKNHIESRDAA 130

Query: 205 ES--THTVINKDKGKSIMQEDHSQHNASIATLSVQQLQDMIMTLIIAQYGGPAQSSLLYS 264
           ES  THT+ N +KGK+IMQE   Q++ SIA+LSVQQLQ+MI   I  QYGGPAQ+  LYS
Sbjct: 131 ESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTFSLYS 190

The following BLAST results are available for this feature:

BLAST of Sed0004738 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058295.1	5.0e-25	57.02	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0059562.1	6.6e-25	56.20	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK03695.1	6.6e-25	56.20	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0047735.1	8.6e-25	57.02	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050518.1	8.6e-25	55.74	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0004738 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0004738 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UXF0	2.4e-25	57.02	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UUI7	3.2e-25	56.20	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BX77	3.2e-25	56.20	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7U259	4.2e-25	57.02	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U5H1	4.2e-25	55.74	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Sed0004738 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 70..90
None	No IPR available	COILS	Coil	Coil	coord: 170..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004738.1	Sed0004738.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding