Sed0004704 (gene) Chayote v1

Overview


Name	Sed0004704
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Uncharacterised conserved protein (UCP030365)
Location	LG04: 41044588 .. 41045217 (+)
RNA-Seq Expression	Sed0004704
Synteny	Sed0004704

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTGAAAACACTAAGGTCATTGCTCCTTCTTCAGGAGTTATTTCCTTTAGTCACTGTCATTGCTCGGGTAATGAAGTGGCTCACTCCCTCGTGCAGGCAAGAGGGGTTGATGGTATTTTTCGTCGTAGTTTTGGGTCTTCTCCCCCCAGAAGATAATTGTTACAATTCAAGTGCTACTATTGCTTCTCCATGGTTGGAACTGATGCATCAAGACATTAAAGGGCGTCTTTCAGGTATGTTGTGAAGAGTTCGCCCGAGGATATTTCAGTTATTTCCTCTGCTGATGTTCAGCAAGCAAGATGGACTAAACTGCTTGATCAGATGGATAAAGCTCTTGCTGAAGAAGAGAAACAACTAGTAAGTATATTGCCTGTTCAACTGTTTTCAAGGGTACAAAAATTCAAATTTCTTGGAGATTCCGTACACATTTTGTTTGGGCAGCTAATCCAATTAATAGGCTAAAAAAATGTGCTACTTGCAATTGATTCTACCATTGAACTTCAGGAAAGTTGGTTGAACCAAGTAAAAGAAATGATGCACTGTGATCAAGGGCTAAAACATGTTTAGTCAAGTGTCCCTTTAGGCTCGCAGCAAGCGGGAGAAACACAAAATGACTCAAGGTTAG

mRNA sequence

ATGTCATTGAAAACACTAAGGTCATTGCTCCTTCTTCAGGAGTTATTTCCTTTAGTCACTGTCATTGCTCGGGTAATGAAGTGGCTCACTCCCTCGTGCAGGCAAGAGGGGTTGATGGTATTTTTCGTCGTAGTTTTGGGTCTTCTCCCCCCAGAAGATAATTGTTACAATTCAAGTGCTACTATTGCTTCTCCATGGTTGGAACTGATGCATCAAGACATTAAAGGGCGTCTTTCAGTTATTTCCTCTGCTGATGTTCAGCAAGCAAGATGGACTAAACTGCTTGATCAGATGGATAAAGCTCTTGCTGAAGAAGAGAAACAACTAGCTCGCAGCAAGCGGGAGAAACACAAAATGACTCAAGGTTAG

Coding sequence (CDS)

ATGTCATTGAAAACACTAAGGTCATTGCTCCTTCTTCAGGAGTTATTTCCTTTAGTCACTGTCATTGCTCGGGTAATGAAGTGGCTCACTCCCTCGTGCAGGCAAGAGGGGTTGATGGTATTTTTCGTCGTAGTTTTGGGTCTTCTCCCCCCAGAAGATAATTGTTACAATTCAAGTGCTACTATTGCTTCTCCATGGTTGGAACTGATGCATCAAGACATTAAAGGGCGTCTTTCAGTTATTTCCTCTGCTGATGTTCAGCAAGCAAGATGGACTAAACTGCTTGATCAGATGGATAAAGCTCTTGCTGAAGAAGAGAAACAACTAGCTCGCAGCAAGCGGGAGAAACACAAAATGACTCAAGGTTAG

Protein sequence

MSLKTLRSLLLLQELFPLVTVIARVMKWLTPSCRQEGLMVFFVVVLGLLPPEDNCYNSSATIASPWLELMHQDIKGRLSVISSADVQQARWTKLLDQMDKALAEEEKQLARSKREKHKMTQG

Homology

[Close]

BLAST of Sed0004704 vs. NCBI nr
Match: XP_022984258.1 (uncharacterized protein LOC111482623 isoform X1 [Cucurbita maxima])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 59  SATIASPWLELMHQDIKGRL---------------------------------------- 110
           +AT+AS WL+LMHQDIKGRL                                        
Sbjct: 445 AATVASQWLDLMHQDIKGRLSALRRSKKRVRAVISTELPFLISKEFPSNEENDPYVAKNL 504

[Close]

BLAST of Sed0004704 vs. NCBI nr
Match: KAG7031510.1 (hypothetical protein SDJN02_05550 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 59  SATIASPWLELMHQDIKGRL---------------------------------------- 110
           +AT+AS WL+LMHQDIKGRL                                        
Sbjct: 441 AATVASQWLDLMHQDIKGRLSALRRSKKRVRAVISTELPFLISKEFPSNEENDPYVAKNS 500

[Close]

BLAST of Sed0004704 vs. NCBI nr
Match: XP_023541857.1 (uncharacterized protein LOC111801878 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 59  SATIASPWLELMHQDIKGRL---------------------------------------- 110
           +AT+AS WL+LMHQDIKGRL                                        
Sbjct: 441 AATVASQWLDLMHQDIKGRLSALRRSKKRVRAVISTELPFLISKEFPSNEENDPYVAKNS 500

[Close]

BLAST of Sed0004704 vs. NCBI nr
Match: KAG6600876.1 (hypothetical protein SDJN03_06109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 59  SATIASPWLELMHQDIKGRL---------------------------------------- 110
           +AT+AS WL+LMHQDIKGRL                                        
Sbjct: 441 AATVASQWLDLMHQDIKGRLSALRRSKKRVRAVISTELPFLISKEFPSNEENDPYVAKNS 500

[Close]

BLAST of Sed0004704 vs. NCBI nr
Match: XP_022984269.1 (uncharacterized protein LOC111482623 isoform X2 [Cucurbita maxima])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 59  SATIASPWLELMHQDIKGRL---------------------------------------- 110
           +AT+AS WL+LMHQDIKGRL                                        
Sbjct: 387 AATVASQWLDLMHQDIKGRLSALRRSKKRVRAVISTELPFLISKEFPSNEENDPYVAKNL 446

[Close]

BLAST of Sed0004704 vs. ExPASy TrEMBL
Match: A0A6J1JA09 (uncharacterized protein LOC111482623 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482623 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 59  SATIASPWLELMHQDIKGRL---------------------------------------- 110
           +AT+AS WL+LMHQDIKGRL                                        
Sbjct: 445 AATVASQWLDLMHQDIKGRLSALRRSKKRVRAVISTELPFLISKEFPSNEENDPYVAKNL 504

[Close]

BLAST of Sed0004704 vs. ExPASy TrEMBL
Match: A0A6J1JA03 (uncharacterized protein LOC111482623 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482623 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 59  SATIASPWLELMHQDIKGRL---------------------------------------- 110
           +AT+AS WL+LMHQDIKGRL                                        
Sbjct: 387 AATVASQWLDLMHQDIKGRLSALRRSKKRVRAVISTELPFLISKEFPSNEENDPYVAKNL 446

[Close]

BLAST of Sed0004704 vs. ExPASy TrEMBL
Match: A0A5D3BAC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00180 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 42/95 (44.21%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 59  SATIASPWLELMHQDIKGRL---------------------------------------- 110
           +AT+AS WL+L+HQDIKGRL                                        
Sbjct: 440 AATVASQWLDLIHQDIKGRLSALRRSKKRVRAVISTELPFLISKEFPSNEENDPFVSKSS 499

[Close]

BLAST of Sed0004704 vs. ExPASy TrEMBL
Match: A0A1S3C5N3 (uncharacterized protein LOC103496748 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496748 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 42/95 (44.21%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 59  SATIASPWLELMHQDIKGRL---------------------------------------- 110
           +AT+AS WL+L+HQDIKGRL                                        
Sbjct: 440 AATVASQWLDLIHQDIKGRLSALRRSKKRVRAVISTELPFLISKEFPSNEENDPFVSKSS 499

[Close]

BLAST of Sed0004704 vs. ExPASy TrEMBL
Match: A0A1S3C3Z7 (uncharacterized protein LOC103496748 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496748 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 42/95 (44.21%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 59  SATIASPWLELMHQDIKGRL---------------------------------------- 110
           +AT+AS WL+L+HQDIKGRL                                        
Sbjct: 351 AATVASQWLDLIHQDIKGRLSALRRSKKRVRAVISTELPFLISKEFPSNEENDPFVSKSS 410

[Close]

BLAST of Sed0004704 vs. TAIR 10
Match: AT5G05240.1 (Uncharacterised conserved protein (UCP030365) )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 28/93 (30.11%), Postives = 41/93 (44.09%), Query Frame = 0


Query: 58  SSATIASPWLELMHQDIKGRLSVI------------------------------------ 110
           ++AT+AS WLEL+HQDIKGR+S +                                    
Sbjct: 365 NAATVASQWLELLHQDIKGRVSALRRSRKRVRAVVTIELPHLIRKEFPADQENDPTLLLG 424

The following BLAST results are available for this feature:

BLAST of Sed0004704 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984258.1	3.4e-08	45.26	uncharacterized protein LOC111482623 isoform X1 [Cucurbita maxima]	[more]
KAG7031510.1	3.4e-08	45.26	hypothetical protein SDJN02_05550 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023541857.1	3.4e-08	45.26	uncharacterized protein LOC111801878 [Cucurbita pepo subsp. pepo]	[more]
KAG6600876.1	3.4e-08	45.26	hypothetical protein SDJN03_06109, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022984269.1	3.4e-08	45.26	uncharacterized protein LOC111482623 isoform X2 [Cucurbita maxima]	[more]

BLAST of Sed0004704 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0004704 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JA09	1.6e-08	45.26	uncharacterized protein LOC111482623 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JA03	1.6e-08	45.26	uncharacterized protein LOC111482623 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5D3BAC1	2.8e-08	44.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C5N3	2.8e-08	44.21	uncharacterized protein LOC103496748 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C3Z7	2.8e-08	44.21	uncharacterized protein LOC103496748 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Sed0004704 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05240.1	3.7e-05	30.11	Uncharacterised conserved protein (UCP030365)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 95..122
None	No IPR available	PANTHER	PTHR33924:SF5	CATION-TRANSPORTING ATPASE	coord: 59..79
None	No IPR available	PANTHER	PTHR33924	CATION-TRANSPORTING ATPASE	coord: 59..79
None	No IPR available	PANTHER	PTHR33924:SF5	CATION-TRANSPORTING ATPASE	coord: 82..112
None	No IPR available	PANTHER	PTHR33924	CATION-TRANSPORTING ATPASE	coord: 82..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004704.1	Sed0004704.1	mRNA