Sed0004598 (gene) Chayote v1

Overview


Name	Sed0004598
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Legume-specific protein
Location	LG04: 26032094 .. 26032333 (-)
RNA-Seq Expression	Sed0004598
Synteny	Sed0004598

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGCTTAATCCCTTTTGTCTACAAAGCAATTGTCCAATACAAGAATGAGAAACAAGTTCCGGCGATCCGATCTTGGCTCGATTCGCCGTCGGCGTCGTACATCAGACTTCCGAGCGGCGATTCCGGCCGCTTCCAGTTCCAATCCGAAGCCTCCTCCGCCGCCGCCCAGATTCTCGTCGCCACCGGAGTTCAGTCGCCGCTCCGCCACCTCACGCCTCGTCGGGTCGCCGCCTGA

mRNA sequence

ATGGAAGGCTTAATCCCTTTTGTCTACAAAGCAATTGTCCAATACAAGAATGAGAAACAAGTTCCGGCGATCCGATCTTGGCTCGATTCGCCGTCGGCGTCGTACATCAGACTTCCGAGCGGCGATTCCGGCCGCTTCCAGTTCCAATCCGAAGCCTCCTCCGCCGCCGCCCAGATTCTCGTCGCCACCGGAGTTCAGTCGCCGCTCCGCCACCTCACGCCTCGTCGGGTCGCCGCCTGA

Coding sequence (CDS)

ATGGAAGGCTTAATCCCTTTTGTCTACAAAGCAATTGTCCAATACAAGAATGAGAAACAAGTTCCGGCGATCCGATCTTGGCTCGATTCGCCGTCGGCGTCGTACATCAGACTTCCGAGCGGCGATTCCGGCCGCTTCCAGTTCCAATCCGAAGCCTCCTCCGCCGCCGCCCAGATTCTCGTCGCCACCGGAGTTCAGTCGCCGCTCCGCCACCTCACGCCTCGTCGGGTCGCCGCCTGA

Protein sequence

MEGLIPFVYKAIVQYKNEKQVPAIRSWLDSPSASYIRLPSGDSGRFQFQSEASSAAAQILVATGVQSPLRHLTPRRVAA

Homology

[Close]

BLAST of Sed0004598 vs. NCBI nr
Match: KAA0044116.1 (legume-specific protein [Cucumis melo var. makuwa] >TYK25022.1 legume-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.1e-27
Identity = 72/89 (80.90%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWL-DSPSASYIRLPSGDSGRFQFQSEA------- 60
          MEGLIPFVYKAIVQYKNEKQVPAIRSWL DSPS SYIRLPSGDSGRFQFQS+A       
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 --SSAAAQILVATGVQSPLRHLTPRRVAA 80
            S+ A QILV+TGVQSPLRHLT RRVAA
Sbjct: 61 TSSTTATQILVSTGVQSPLRHLTTRRVAA 89

[Close]

BLAST of Sed0004598 vs. NCBI nr
Match: KAE8650999.1 (hypothetical protein Csa_002313 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-26
Identity = 70/86 (81.40%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 3   GLIPFVYKAIVQYKNEKQVPAIRSWL-DSPSASYIRLPSGDSGRFQFQSEA--------S 62
           GLIPFVYKAIVQYKNEKQVPAIRSWL DSPS SYIRLPSGDSGRFQFQS+A        S
Sbjct: 109 GLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSPTS 168

Query: 63  SAAAQILVATGVQSPLRHLTPRRVAA 80
           S   QILV+TGVQSPLRHLT RRVAA
Sbjct: 169 STTTQILVSTGVQSPLRHLTTRRVAA 194

[Close]

BLAST of Sed0004598 vs. NCBI nr
Match: KAG7017269.1 (hypothetical protein SDJN02_19132, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.7 bits (317), Expect = 8.8e-26
Identity = 69/89 (77.53%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWL-DSPSASYIRLPSGDSGRFQFQS--------- 60
          MEG+IPFVYKAIVQYKNEKQVPAIRSWL DSPS SYIRLPSGDSGRFQ  S         
Sbjct: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQDGSYSAASPSSK 60

Query: 61 EASSAAAQILVATGVQSPLRHLTPRRVAA 80
           ASS   QIL++TGVQSPLRHLTPRRVAA
Sbjct: 61 SASSTTTQILISTGVQSPLRHLTPRRVAA 89

[Close]

BLAST of Sed0004598 vs. NCBI nr
Match: KAG6580521.1 (hypothetical protein SDJN03_20523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 2.6e-25
Identity = 68/89 (76.40%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWL-DSPSASYIRLPSGDSGRFQFQS--------- 60
          MEG+IPFVYKAIVQYKNEKQVPAIRSWL DSPS SYIRLPSGDSGRFQ  S         
Sbjct: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQDGSYSAASPSSK 60

Query: 61 EASSAAAQILVATGVQSPLRHLTPRRVAA 80
           ASS   QIL++TGVQSPLRHLTPRRV A
Sbjct: 61 SASSTTTQILISTGVQSPLRHLTPRRVVA 89

[Close]

BLAST of Sed0004598 vs. NCBI nr
Match: KAG6596392.1 (hypothetical protein SDJN03_09572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 6.3e-24
Identity = 67/91 (73.63%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWL-DSPSASYIRLPSGDSGRFQFQSE-------- 60
          MEGLIPFVY+AIV YKN+KQVP IRSWL DSPSASYIRLPSGDSGRF FQS+        
Sbjct: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLTDSPSASYIRLPSGDSGRFLFQSDGSYTATSP 60

Query: 61 ---ASSAAAQILVATGVQSPLRHLTPRRVAA 80
              SS A QILVATGVQSPLR L P RVAA
Sbjct: 61 SKSVSSTATQILVATGVQSPLRQLAPSRVAA 91

[Close]

BLAST of Sed0004598 vs. ExPASy TrEMBL
Match: A0A5D3DNC7 (Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001410 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27
Identity = 72/89 (80.90%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWL-DSPSASYIRLPSGDSGRFQFQSEA------- 60
          MEGLIPFVYKAIVQYKNEKQVPAIRSWL DSPS SYIRLPSGDSGRFQFQS+A       
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 --SSAAAQILVATGVQSPLRHLTPRRVAA 80
            S+ A QILV+TGVQSPLRHLT RRVAA
Sbjct: 61 TSSTTATQILVSTGVQSPLRHLTTRRVAA 89

[Close]

BLAST of Sed0004598 vs. ExPASy TrEMBL
Match: A0A0A0LD26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27
Identity = 72/88 (81.82%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWL-DSPSASYIRLPSGDSGRFQFQSEA------- 60
          MEGLIPFVYKAIVQYKNEKQVPAIRSWL DSPS SYIRLPSGDSGRFQFQS+A       
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 -SSAAAQILVATGVQSPLRHLTPRRVAA 80
           SS   QILV+TGVQSPLRHLT RRVAA
Sbjct: 61 TSSTTTQILVSTGVQSPLRHLTTRRVAA 88

[Close]

BLAST of Sed0004598 vs. ExPASy TrEMBL
Match: K7MT87 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.0e-16
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWL-DSPSASYIRLPSGDSGRFQFQSEA------- 60
          MEGLIPFVYKAI+QYK +K    I SWL +SPS SY+RLP+GDSGRFQ Q+ A       
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 -------SSAAAQILVATGVQSPLRHLTPRRVAA 80
                 SS+A QI+V++GVQSP + LT RR+AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRRIAA 94

[Close]

BLAST of Sed0004598 vs. ExPASy TrEMBL
Match: A0A0B2P904 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048924 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.6e-15
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWL-DSPSASYIRLPSGDSGRFQFQSEA------- 60
          MEGLIPFVYKAI+QYK +K    I SWL +SPS SY+RLP+GDSGRFQ Q+ A       
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 -------SSAAAQILVATGVQSPLRHLTPRRVAA 80
                 SS+A QI+V++GVQSP + LT R +AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRPIAA 94

[Close]

BLAST of Sed0004598 vs. ExPASy TrEMBL
Match: A0A2K3M0C8 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g040293 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.5e-15
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWL-DSPSASYIRLPSGDSGRFQFQSEA------- 60
          MEGLIP VYK I+QYK EK+  AI SW+ +SPS SY+RLP+GDSGRFQ QS +       
Sbjct: 1  MEGLIPLVYKTIMQYKGEKE-GAIGSWICESPSYSYMRLPTGDSGRFQIQSTSSLSSSSS 60

Query: 61 ---SSAAAQILVATGVQSPLRHLTPRRVAA 80
             SS+A++I+V++GVQSP   LT RR+AA
Sbjct: 61 KPVSSSASKIIVSSGVQSPHHCLTHRRIAA 89

[Close]

BLAST of Sed0004598 vs. TAIR 10
Match: AT2G37750.1 (unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 5.3e-05
Identity = 33/85 (38.82%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQ--YKNEKQVPAIRSWLDSPSASYIRLPSGDSGRF------------ 60
          MEGLIP VYKA++Q  Y NE Q           S+ Y+RLP GDSGRF            
Sbjct: 1  MEGLIPLVYKAVMQIRYGNESQ--------QLSSSYYVRLP-GDSGRFVRSDLDVSGPGS 60

Query: 61 --QFQSEASSAAAQILVATGVQSPL 70
              ++ +S++     V  GVQSP+
Sbjct: 61 NSSNRASSSTSTTTFAVYAGVQSPV 76

[Close]

BLAST of Sed0004598 vs. TAIR 10
Match: AT5G02090.1 (unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 7.0e-05
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAI-RSWLDSPSAS--YIRLPSGDSGRFQ 48
          MEGLIPF+YKAIV YK E    ++  S   SPS +  Y+RLP   S RF+
Sbjct: 1  MEGLIPFLYKAIVMYKREGSFSSVLLSDHHSPSNAGYYMRLPGDSSSRFR 50

The following BLAST results are available for this feature:

BLAST of Sed0004598 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044116.1	2.1e-27	80.90	legume-specific protein [Cucumis melo var. makuwa] >TYK25022.1 legume-specific p...	[more]
KAE8650999.1	3.0e-26	81.40	hypothetical protein Csa_002313 [Cucumis sativus]	[more]
KAG7017269.1	8.8e-26	77.53	hypothetical protein SDJN02_19132, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6580521.1	2.6e-25	76.40	hypothetical protein SDJN03_20523, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6596392.1	6.3e-24	73.63	hypothetical protein SDJN03_09572, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0004598 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0004598 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNC7	1.0e-27	80.90	Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LD26	1.0e-27	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1	[more]
K7MT87	4.0e-16	57.45	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1	[more]
A0A0B2P904	2.6e-15	56.38	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048924 PE=4 SV=1	[more]
A0A2K3M0C8	7.5e-15	57.78	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g040293 PE=4 SV=1	[more]

BLAST of Sed0004598 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37750.1	5.3e-05	38.82	unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bact...	[more]
AT5G02090.1	7.0e-05	52.00	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34670	EXPRESSED PROTEIN	coord: 1..79
None	No IPR available	PANTHER	PTHR34670:SF10	LEGUME-SPECIFIC PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004598.1	Sed0004598.1	mRNA