Sed0004530 (gene) Chayote v1

Overview


Name	Sed0004530
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Histone H2A
Location	LG11: 3531747 .. 3532975 (+)
RNA-Seq Expression	Sed0004530
Synteny	Sed0004530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATCGCCATCACAAAAGCATAAAATCCAGAGATTCAGAATCAAAGCATTCAACAATGGAGGGAACTAAAGGCGCCGGAGGAAGAACAGGCGGCGGCGGCAGAGCAAAGATCTCCAAATCCGCAAAGGCCGGACTCCAATTCCCCGTCGGAAGGATCGGCCGCTACCTCAAGAAAGGCCGCTACGCCAAACGCACCGCCGCCGGTGCTCCAATCTACCTCGCCGCCGTCCTCGAATACCTCGCCGCCGAGGTAACTTATCAAAATCCACATCTGATTTCATCTCCATTCGCGTTCTTAGAATCGAATCAGTTTTTTCGATTTCTGAAATTGTGATTTTCGAGTTCCTCGCCGCAGAATCCAGATCTAATTTCATCTCCATTCGCATTGTTAATCAGTTTTTCGATTTCTGAAATTGTTATTCTCGAATTCCTTGCCGCAGAGGTTAATCGAACAAAATCCAGACCTAATTTCATCTCCATTCGCATTGTTAGAATCGAATCAGTTTTTCGATTTCTGAAATTGTGATTCTCAAATTCCTTGCCGTGAGCTAACCAAACAAAATCCAGTCCAGATTTAATTTTATCTCCACTCACATTCTAAGAATCAAATTAGTTTTTCGATTTGAGAAATTGTGATTCTCGAATTTTTCCTGGCAGAGGTGAATCAAACAAAATCCATATCTGATTTCATCTCCCTCCGCATTCTAAGAATCAAATCAGTTTTTCGATTTCTGAAATTGCGATTCTCGAATTCCTTTCTGCAGAGGTAAAAAATTCAAACAATCCACATCTAATTTCATCAAATCAGTTTTTCGATTTCTGCAATTATGATTCTCGAATTCCTCGCCGCAGATATCTAATCTCGTATCGACTCGAATTCTTAGGATTCAAATTAGTTTTCCGATTTCTGAAATTTGCGATTGAATTAATCCAGGTTTTGGAATTGTCTGGAAATGCTGCGCGCGACAACAAGAAGAACAGGATAAACCCTAGGCATGTGCTTTTGGCGGTGAAGAACGACGATGAGCTTCGAGAATTGCTTCAAGGAGTCACCATTGCTAGCGGCGGAGTTCTCCCGAACATCAATCCGGTTCTTCTTCCGAAGAAGACGGCTGAGAAATCTCAGGAATCGCCAAGAAATGCCTAAATTAAGTACAGGTTTCTGAGATTTTGAACTTCATTTTGTAAATTTTTTAGGAGATTCTCTTTGAATCCTGAGTTAGTTGGAC

mRNA sequence

CTATCGCCATCACAAAAGCATAAAATCCAGAGATTCAGAATCAAAGCATTCAACAATGGAGGGAACTAAAGGCGCCGGAGGAAGAACAGGCGGCGGCGGCAGAGCAAAGATCTCCAAATCCGCAAAGGCCGGACTCCAATTCCCCGTCGGAAGGATCGGCCGCTACCTCAAGAAAGGCCGCTACGCCAAACGCACCGCCGCCGGTGCTCCAATCTACCTCGCCGCCGTCCTCGAATACCTCGCCGCCGAGGTTTTGGAATTGTCTGGAAATGCTGCGCGCGACAACAAGAAGAACAGGATAAACCCTAGGCATGTGCTTTTGGCGGTGAAGAACGACGATGAGCTTCGAGAATTGCTTCAAGGAGTCACCATTGCTAGCGGCGGAGTTCTCCCGAACATCAATCCGGTTCTTCTTCCGAAGAAGACGGCTGAGAAATCTCAGGAATCGCCAAGAAATGCCTAAATTAAGTACAGGTTTCTGAGATTTTGAACTTCATTTTGTAAATTTTTTAGGAGATTCTCTTTGAATCCTGAGTTAGTTGGAC

Coding sequence (CDS)

ATGGAGGGAACTAAAGGCGCCGGAGGAAGAACAGGCGGCGGCGGCAGAGCAAAGATCTCCAAATCCGCAAAGGCCGGACTCCAATTCCCCGTCGGAAGGATCGGCCGCTACCTCAAGAAAGGCCGCTACGCCAAACGCACCGCCGCCGGTGCTCCAATCTACCTCGCCGCCGTCCTCGAATACCTCGCCGCCGAGGTTTTGGAATTGTCTGGAAATGCTGCGCGCGACAACAAGAAGAACAGGATAAACCCTAGGCATGTGCTTTTGGCGGTGAAGAACGACGATGAGCTTCGAGAATTGCTTCAAGGAGTCACCATTGCTAGCGGCGGAGTTCTCCCGAACATCAATCCGGTTCTTCTTCCGAAGAAGACGGCTGAGAAATCTCAGGAATCGCCAAGAAATGCCTAA

Protein sequence

MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLLPKKTAEKSQESPRNA

Homology

[Close]

BLAST of Sed0004530 vs. NCBI nr
Match: XP_008454292.1 (PREDICTED: probable histone H2A.5 [Cucumis melo] >KAA0048024.1 putative histone H2A.5 [Cucumis melo var. makuwa] >TYK13795.1 putative histone H2A.5 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 120/142 (84.51%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60
           MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE
Sbjct: 1   MEGTKGAGGRK-GGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60

Query: 61  YLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLL 120
           YLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +LLQGVTIASGGVLPNINPVLL
Sbjct: 61  YLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLL 120

Query: 121 PKK-------TAEKSQESPRNA 136
           PKK       TAEK+Q+SP+ A
Sbjct: 121 PKKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Sed0004530 vs. NCBI nr
Match: XP_038890710.1 (probable histone H2A.5 [Benincasa hispida])

HSP 1 Score: 219.2 bits (557), Expect = 2.2e-53
Identity = 120/142 (84.51%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60
           MEGTKGAGGR  GG R KISKS KAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE
Sbjct: 1   MEGTKGAGGRK-GGDRTKISKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60

Query: 61  YLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLL 120
           YLAAEVLEL+GNAARDNKKNRINPRH+LLAV+ND+EL +LLQGVTIASGGVLPNINPVLL
Sbjct: 61  YLAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLL 120

Query: 121 PKK-------TAEKSQESPRNA 136
           PKK       TAEK+Q+SP+ A
Sbjct: 121 PKKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Sed0004530 vs. NCBI nr
Match: XP_004144786.1 (probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_021264 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 3.8e-53
Identity = 119/142 (83.80%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60
           MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYA+RTAAGAPIYLAAVLE
Sbjct: 1   MEGTKGAGGRK-GGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLE 60

Query: 61  YLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLL 120
           YLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +LLQGVTIASGGVLPNINPVLL
Sbjct: 61  YLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLL 120

Query: 121 PKK-------TAEKSQESPRNA 136
           PKK       TAEK+Q+SP+ A
Sbjct: 121 PKKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Sed0004530 vs. NCBI nr
Match: XP_022150784.1 (probable histone H2A.5 [Momordica charantia])

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-52
Identity = 118/141 (83.69%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60
           MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE
Sbjct: 1   MEGTKGAGGRK-GGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60

Query: 61  YLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLL 120
           YLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +LLQGVTIASGGVLPNINPVLL
Sbjct: 61  YLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLL 120

Query: 121 PKK--------TAEKSQESPR 134
           PKK        TAEK+ +SP+
Sbjct: 121 PKKTSSNSTPSTAEKAPKSPK 140

[Close]

BLAST of Sed0004530 vs. NCBI nr
Match: XP_022946249.1 (histone H2A.1-like [Cucurbita moschata] >XP_022946250.1 histone H2A.1-like [Cucurbita moschata] >XP_023545339.1 histone H2A.1-like [Cucurbita pepo subsp. pepo] >KAG6599229.1 hypothetical protein SDJN03_09007, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030234.1 hypothetical protein SDJN02_08581 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.8 bits (543), Expect = 9.3e-52
Identity = 117/142 (82.39%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60
           MEGTKGAGGR  GG R+KISKSAKAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLE
Sbjct: 1   MEGTKGAGGRK-GGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLE 60

Query: 61  YLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLL 120
           YLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +LLQGVTIASGGVLPNI+PVLL
Sbjct: 61  YLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLL 120

Query: 121 PKKT-------AEKSQESPRNA 136
           PKK+       AEK+Q+SP+ A
Sbjct: 121 PKKSSSNSTSPAEKAQKSPKKA 141

[Close]

BLAST of Sed0004530 vs. ExPASy Swiss-Prot
Match: P25469 (Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.5e-49
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 4   TKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 63
           TKGAGGR GG  +  ++KS KAGLQFPVGRIGRYLKKGRYA+R  +GAPIYLAAVLEYLA
Sbjct: 7   TKGAGGRKGGPRKKSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLA 66

Query: 64  AEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLLPKK 123
           AEVLEL+GNAARDNKK+RI PRHVLLAV+ND+EL +LL GVTIASGGVLPNINPVLLPKK
Sbjct: 67  AEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKK 126

Query: 124 TAEKSQESPR 134
           +A   ++SP+
Sbjct: 127 SAVAEEKSPK 136

[Close]

BLAST of Sed0004530 vs. ExPASy Swiss-Prot
Match: A2WQG7 (Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 8.5e-48
Identity = 102/132 (77.27%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 5   KGAGGRTGGGGRAK-ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 64
           KGA GR  GG R K +S+S KAGLQFPVGRIGRYLKKGRYA+R   GAP+YLAAVLEYLA
Sbjct: 14  KGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLA 73

Query: 65  AEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLLPKK 124
           AEVLEL+GNAARDNKKNRI PRHVLLA++ND+EL +LL GVTIA GGVLPNINPVLLPKK
Sbjct: 74  AEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133

Query: 125 TAEKSQESPRNA 136
           TAEK+  + + A
Sbjct: 134 TAEKAAAAGKEA 145

[Close]

BLAST of Sed0004530 vs. ExPASy Swiss-Prot
Match: Q94E96 (Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 8.5e-48
Identity = 102/132 (77.27%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 5   KGAGGRTGGGGRAK-ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 64
           KGA GR  GG R K +S+S KAGLQFPVGRIGRYLKKGRYA+R   GAP+YLAAVLEYLA
Sbjct: 14  KGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLA 73

Query: 65  AEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLLPKK 124
           AEVLEL+GNAARDNKKNRI PRHVLLA++ND+EL +LL GVTIA GGVLPNINPVLLPKK
Sbjct: 74  AEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133

Query: 125 TAEKSQESPRNA 136
           TAEK+  + + A
Sbjct: 134 TAEKAAAAGKEA 145

[Close]

BLAST of Sed0004530 vs. ExPASy Swiss-Prot
Match: Q94F49 (Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.9e-47
Identity = 97/130 (74.62%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 4   TKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 63
           T+GAGGR GG  +  +SKS KAGLQFPVGRI RYLKKGRYA R  +GAP+YLAAVLEYLA
Sbjct: 11  TRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

Query: 64  AEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLLPKK 123
           AEVLEL+GNAARDNKKNRINPRH+ LA++ND+EL  LL GVTIASGGVLPNINPVLLPKK
Sbjct: 71  AEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130

Query: 124 TAEKSQESPR 134
           +   S ++ +
Sbjct: 131 STASSSQAEK 140

[Close]

BLAST of Sed0004530 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.2e-47
Identity = 97/130 (74.62%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 5   KGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAA 64
           KG GGR GG  +  +++S KAGLQFPVGRIGRYLKKGRYA+R   GAP+YLAAVLEYLAA
Sbjct: 9   KGFGGRKGGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAA 68

Query: 65  EVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLLPKKT 124
           EVLEL+GNAARDNKK RI PRH+LLAV+ND+EL +LL GVT A GGVLPNINPVLLPKKT
Sbjct: 69  EVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKKT 128

Query: 125 AEKSQESPRN 135
           AEK+ + P++
Sbjct: 129 AEKAAKEPKS 138

[Close]

BLAST of Sed0004530 vs. ExPASy TrEMBL
Match: A0A5A7TYC1 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00570 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.3e-54
Identity = 120/142 (84.51%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60
           MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE
Sbjct: 1   MEGTKGAGGRK-GGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60

Query: 61  YLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLL 120
           YLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +LLQGVTIASGGVLPNINPVLL
Sbjct: 61  YLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLL 120

Query: 121 PKK-------TAEKSQESPRNA 136
           PKK       TAEK+Q+SP+ A
Sbjct: 121 PKKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Sed0004530 vs. ExPASy TrEMBL
Match: A0A1S3BZ15 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.3e-54
Identity = 120/142 (84.51%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60
           MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE
Sbjct: 1   MEGTKGAGGRK-GGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60

Query: 61  YLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLL 120
           YLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +LLQGVTIASGGVLPNINPVLL
Sbjct: 61  YLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLL 120

Query: 121 PKK-------TAEKSQESPRNA 136
           PKK       TAEK+Q+SP+ A
Sbjct: 121 PKKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Sed0004530 vs. ExPASy TrEMBL
Match: A0A0A0LLV9 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 119/142 (83.80%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60
           MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYA+RTAAGAPIYLAAVLE
Sbjct: 1   MEGTKGAGGRK-GGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLE 60

Query: 61  YLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLL 120
           YLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +LLQGVTIASGGVLPNINPVLL
Sbjct: 61  YLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLL 120

Query: 121 PKK-------TAEKSQESPRNA 136
           PKK       TAEK+Q+SP+ A
Sbjct: 121 PKKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Sed0004530 vs. ExPASy TrEMBL
Match: A0A6J1DB39 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018847 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.1e-53
Identity = 118/141 (83.69%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60
           MEGTKGAGGR  GG R K+SKS KAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE
Sbjct: 1   MEGTKGAGGRK-GGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60

Query: 61  YLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLL 120
           YLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +LLQGVTIASGGVLPNINPVLL
Sbjct: 61  YLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLL 120

Query: 121 PKK--------TAEKSQESPR 134
           PKK        TAEK+ +SP+
Sbjct: 121 PKKTSSNSTPSTAEKAPKSPK 140

[Close]

BLAST of Sed0004530 vs. ExPASy TrEMBL
Match: A0A6J1G397 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111450390 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.5e-52
Identity = 117/142 (82.39%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MEGTKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLE 60
           MEGTKGAGGR  GG R+KISKSAKAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLE
Sbjct: 1   MEGTKGAGGRK-GGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLE 60

Query: 61  YLAAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLL 120
           YLAAEVLEL+GNAARDNKKNRINPRHVLLAV+ND+EL +LLQGVTIASGGVLPNI+PVLL
Sbjct: 61  YLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLL 120

Query: 121 PKKT-------AEKSQESPRNA 136
           PKK+       AEK+Q+SP+ A
Sbjct: 121 PKKSSSNSTSPAEKAQKSPKKA 141

[Close]

BLAST of Sed0004530 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-48
Identity = 97/130 (74.62%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 4   TKGAGGRTGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 63
           T+GAGGR GG  +  +SKS KAGLQFPVGRI RYLKKGRYA R  +GAP+YLAAVLEYLA
Sbjct: 11  TRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

Query: 64  AEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLLPKK 123
           AEVLEL+GNAARDNKKNRINPRH+ LA++ND+EL  LL GVTIASGGVLPNINPVLLPKK
Sbjct: 71  AEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130

Query: 124 TAEKSQESPR 134
           +   S ++ +
Sbjct: 131 STASSSQAEK 140

[Close]

BLAST of Sed0004530 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 183.7 bits (465), Expect = 9.6e-47
Identity = 100/138 (72.46%), Postives = 114/138 (82.61%), Query Frame = 0


Query: 5   KGAGGRTGGGGRAK--ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYL 64
           KGA GR  GGG  K  +S+S K+GLQFPVGRIGRYLKKGRY+KR   GAP+YLAAVLEYL
Sbjct: 9   KGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYL 68

Query: 65  AAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLLPK 124
           AAEVLEL+GNAARDNKKNRI PRHVLLAV+ND+EL  LL+GVTIA GGVLPNINP+LLPK
Sbjct: 69  AAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPK 128

Query: 125 KTAE-----KSQESPRNA 136
           K+ +     K+ +SP  A
Sbjct: 129 KSEKAASTTKTPKSPSKA 146

[Close]

BLAST of Sed0004530 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-42
Identity = 100/162 (61.73%), Postives = 114/162 (70.37%), Query Frame = 0


Query: 5   KGAGGRTGGGGRAK--ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYL 64
           KGA GR  GGG  K  +S+S K+GLQFPVGRIGRYLKKGRY+KR   GAP+YLAAVLEYL
Sbjct: 9   KGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYL 68

Query: 65  AAE------------------------VLELSGNAARDNKKNRINPRHVLLAVKNDDELR 124
           AAE                        VLEL+GNAARDNKKNRI PRHVLLAV+ND+EL 
Sbjct: 69  AAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG 128

Query: 125 ELLQGVTIASGGVLPNINPVLLPKKTAE-----KSQESPRNA 136
            LL+GVTIA GGVLPNINP+LLPKK+ +     K+ +SP  A
Sbjct: 129 TLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKA 170

[Close]

BLAST of Sed0004530 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-41
Identity = 91/128 (71.09%), Postives = 104/128 (81.25%), Query Frame = 0


Query: 5   KGAGGR--TGGGGRAKISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYL 64
           K  GGR   G      +SKS KAGLQFPVGRI R+LKKGRYA+R   GAP+Y+AAVLEYL
Sbjct: 9   KAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYL 68

Query: 65  AAEVLELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLLPK 124
           AAEVLEL+GNAARDNKK+RI PRH+LLA++ND+EL +LL GVTIA GGVLPNIN VLLPK
Sbjct: 69  AAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPK 128

Query: 125 KTAEKSQE 131
           K+A K  E
Sbjct: 129 KSATKPAE 136

[Close]

BLAST of Sed0004530 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 161.4 bits (407), Expect = 5.1e-40
Identity = 85/118 (72.03%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 9   GRTGGGGRAK--ISKSAKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEV 68
           G+T G G AK   ++S+KAGLQFPVGRI R+LKKG+YA+R  AGAP+YLAAVLEYLAAEV
Sbjct: 5   GKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEV 64

Query: 69  LELSGNAARDNKKNRINPRHVLLAVKNDDELRELLQGVTIASGGVLPNINPVLLPKKT 125
           LEL+GNAARDNKK RI PRH+ LAV+ND+EL +LL  VTIA+GGV+PNI+ +LLPKKT
Sbjct: 65  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

The following BLAST results are available for this feature:

BLAST of Sed0004530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454292.1	1.3e-53	84.51	PREDICTED: probable histone H2A.5 [Cucumis melo] >KAA0048024.1 putative histone ...	[more]
XP_038890710.1	2.2e-53	84.51	probable histone H2A.5 [Benincasa hispida]	[more]
XP_004144786.1	3.8e-53	83.80	probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_02...	[more]
XP_022150784.1	1.9e-52	83.69	probable histone H2A.5 [Momordica charantia]	[more]
XP_022946249.1	9.3e-52	82.39	histone H2A.1-like [Cucurbita moschata] >XP_022946250.1 histone H2A.1-like [Cucu...	[more]

BLAST of Sed0004530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P25469	3.5e-49	78.46	Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
A2WQG7	8.5e-48	77.27	Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3...	[more]
Q94E96	8.5e-48	77.27	Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 ...	[more]
Q94F49	1.9e-47	74.62	Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1	[more]
P19177	3.2e-47	74.62	Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1	[more]

BLAST of Sed0004530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYC1	6.3e-54	84.51	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00570 PE...	[more]
A0A1S3BZ15	6.3e-54	84.51	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1	[more]
A0A0A0LLV9	1.8e-53	83.80	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1	[more]
A0A6J1DB39	9.1e-53	83.69	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018847 PE=3 SV=1	[more]
A0A6J1G397	4.5e-52	82.39	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111450390 PE=3 SV=1	[more]

BLAST of Sed0004530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27670.1	1.3e-48	74.62	histone H2A 7	[more]
AT5G02560.1	9.6e-47	72.46	histone H2A 12	[more]
AT5G02560.2	1.1e-42	61.73	histone H2A 12	[more]
AT5G59870.1	1.2e-41	71.09	histone H2A 6	[more]
AT1G51060.1	5.1e-40	72.03	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 17..39 score: 62.28 coord: 75..89 score: 70.35 coord: 61..74 score: 83.13 coord: 46..61 score: 73.81 coord: 103..121 score: 76.19
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 6..126 e-value: 3.7E-71 score: 252.4
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 19..123 e-value: 1.61416E-62 score: 185.231
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 4..133 e-value: 4.7E-59 score: 199.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 18..123
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 95..129 e-value: 8.5E-18 score: 63.8
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 15..92 e-value: 2.4E-11 score: 44.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR23430:SF238	HISTONE H2A	coord: 4..127
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 4..127
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 25..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004530.1	Sed0004530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity