Sed0004405 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATGAAGAAGTTGGCCATTGCTTCCTTCATTGTTGTTTCAGCCTCTCTGAACATGGTTTTGGCCTCCAACGAAGTGTCAGCGCCCGCACCCGGTCCGTCAAGCAGCGCCTCCGCTACCTTGCCCGGCATTGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTACCTACTGCCTTCAGTAA ATGGAAATGAAGAAGTTGGCCATTGCTTCCTTCATTGTTGTTTCAGCCTCTCTGAACATGGTTTTGGCCTCCAACGAAGTGTCAGCGCCCGCACCCGGTCCGTCAAGCAGCGCCTCCGCTACCTTGCCCGGCATTGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTACCTACTGCCTTCAGTAA ATGGAAATGAAGAAGTTGGCCATTGCTTCCTTCATTGTTGTTTCAGCCTCTCTGAACATGGTTTTGGCCTCCAACGAAGTGTCAGCGCCCGCACCCGGTCCGTCAAGCAGCGCCTCCGCTACCTTGCCCGGCATTGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTACCTACTGCCTTCAGTAA MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ Homology
BLAST of Sed0004405 vs. NCBI nr
Match: KAA0035760.1 (arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]) HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09 Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0
BLAST of Sed0004405 vs. NCBI nr
Match: KAE8649766.1 (hypothetical protein Csa_011936, partial [Cucumis sativus]) HSP 1 Score: 68.6 bits (166), Expect = 2.2e-08 Identity = 37/56 (66.07%), Postives = 48/56 (85.71%), Query Frame = 0
BLAST of Sed0004405 vs. NCBI nr
Match: PON91671.1 (hypothetical protein TorRG33x02_125020 [Trema orientale]) HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05 Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0
BLAST of Sed0004405 vs. NCBI nr
Match: PON58107.1 (hypothetical protein PanWU01x14_168770 [Parasponia andersonii]) HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05 Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0
BLAST of Sed0004405 vs. NCBI nr
Match: PNT29922.1 (hypothetical protein POPTR_006G056200 [Populus trichocarpa]) HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04 Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 0
BLAST of Sed0004405 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2) HSP 1 Score: 53.5 bits (127), Expect = 9.7e-07 Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0
BLAST of Sed0004405 vs. ExPASy TrEMBL
Match: A0A5D3E271 (Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001050 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 5.7e-10 Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0
BLAST of Sed0004405 vs. ExPASy TrEMBL
Match: A0A2P5F1L3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06 Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0
BLAST of Sed0004405 vs. ExPASy TrEMBL
Match: A0A2P5CAP7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05 Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0
BLAST of Sed0004405 vs. ExPASy TrEMBL
Match: A0A2K1ZXB0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04 Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 0
BLAST of Sed0004405 vs. ExPASy TrEMBL
Match: A0A200QP69 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1779g40 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 2.1e-04 Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 0
BLAST of Sed0004405 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 ) HSP 1 Score: 53.5 bits (127), Expect = 6.9e-08 Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|