Sed0004297 (gene) Chayote v1

Overview
NameSed0004297
Typegene
OrganismSechium edule (Chayote v1)
Descriptionprotein RETICULATA-RELATED 3, chloroplastic
LocationLG03: 20733936 .. 20735781 (+)
RNA-Seq ExpressionSed0004297
SyntenySed0004297
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACAAAACATCGTTAGGGTTTACATTTAACAGCGAGAAATGAAAAATGCCAAACGGAGTTCAGCAAAACCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATAGATTCCTCCGTTGAACAGTGCAGTTTTTGAAAAGTTTCTCCATTATCAGCTGAATCAATTTGTTAGTCTTCTTCTCTTTCTCAAGGTAATCCTAATTTCCCATTATTTGTTTTCCTGTGTTTTATGTTGATCTCTGTTATGTTTTTATCCTTTTTTCCGCTTCAGATCTGGCGAACACCTGTTTAATTGGGTTGTTTTTGTTTTTCTGCATGATGGGTTTGTGATATTTTCCTCAATTTTTGTGTTTGTTGTCTGTTTTTTCAGATTTGAGGAATTGGGTAGGTTTTATTTCTAGGGGTTTTTGTTTCTTTTGTTGAATTATGGCGGCCATGGCTCAGCTGCATTGCTCTATTCGCTCTAGGCACTCCTATAATGTCCCCAATAACCATGCTTACAGTTATAACAACACTCCGGATTTCTCATTTCTATCGAATTTGTCTTCGGTCGAATCAAGGACTCGGTCTCTTTTTCTCTTTAATGGGGATTTAACGAGGCCTTGTTTTTTGCCCAAATCTCAACTCTCTTTTGCTGGTGGGGATGGTGGAAATGGCGTTGGCCACGGTGGAGGCGGTGGTCGTGGGGATGATGGTGGTTGGAGCGATGATCGGCCTCATGGGGACGATGATTCGTCGAGTTTTGGAGTGTTGGGACTGCTTCTTAAAGGGTGGAGAGCTAGGGTTGCTGCGGATCCACAGTTTCCTTTTAAGGTTTTGATGGAGGAACTTGTTGGTGTGAGTGCTTGTGTTCTTGGAGACATGGCATCTCGCCCGAATTTCGGTCTCAACGAGCTTGATTTTGTCTTCTCCACTCTTGTTGTTGGATCTATACTGAATTTCACTCTCATGTATCTCTTGGCTCCCACTGCTTCAGCTGGTGCAGTAGCCAAGCAGCTTCCTGCAATCTTTGCAAGTTGCCCCACGAGTCACATGTTCGAACCTGGCGCTTTCACGGTCTTGGAACGGTTGGGAACTTTGGTTTACAAAGGAACCGTCTTTGCCTCTGTTGGGCTAGTGGCTGGGCTCGCTGGGACTTTGCTCTCAAATGGTTTGATCAAGTTGAGGAAGAAGATGGATCCCGAATTCGAGACTCCGAACAAGCCTCCTCCTACGATGTTGAATTCCATGACTTGGGCAATTCACATGGGGGTCAGTAGCAACTTGAGATACCAAACTTTGAATGGAGTCGAGTTTTTGTTGGCCAAGGGGACCCCCCCTTTGGTATTCAAGAGCTCTGTGGTGGTGTTGAGATGTTTGAACAATATTCTCGGAGGCATGTCGTTTGTCATCCTTGCGAGGATGACGGGATCACAGAGCATTGAGCCAAAGCCAGCAGCTGTGGAGTTAGTTTCTGCCGATGAGAAAGAGAAGCTGTTGGAAGGGGATAAAGATGAGGATTTAAAGTAAGGTCTTTCTGAAAGAACTTGGTTGGTAGAACTATCATTTTCTCTTTTGTTTCCATTGTTAATATACGCTCCATGCTCTGTGACCAATGATCATTTTACTTTTCTTGCTTGTATCAATAAAAAGCTCAAAGTGTTGTGAGGTTTTTGTTTTTTTGAATTGTTAGATGAGGCTTTGCTGATAGTTTTCATGGAAACTCAATGAGTTGCTTTATGGGCCAAATGTGTCTTTTCTTCTTCTTCTTTTGCTTTAGTTGGAATTATTGATGAACATTTAATCCTTCTTCACCGATACAAAGCTTGTCTCTGGATGTGAGTTTTTTCTTAAA

mRNA sequence

CAACAAAACATCGTTAGGGTTTACATTTAACAGCGAGAAATGAAAAATGCCAAACGGAGTTCAGCAAAACCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATAGATTCCTCCGTTGAACAGTGCAGTTTTTGAAAAGTTTCTCCATTATCAGCTGAATCAATTTGTTAGTCTTCTTCTCTTTCTCAAGATTTGAGGAATTGGGTAGGTTTTATTTCTAGGGGTTTTTGTTTCTTTTGTTGAATTATGGCGGCCATGGCTCAGCTGCATTGCTCTATTCGCTCTAGGCACTCCTATAATGTCCCCAATAACCATGCTTACAGTTATAACAACACTCCGGATTTCTCATTTCTATCGAATTTGTCTTCGGTCGAATCAAGGACTCGGTCTCTTTTTCTCTTTAATGGGGATTTAACGAGGCCTTGTTTTTTGCCCAAATCTCAACTCTCTTTTGCTGGTGGGGATGGTGGAAATGGCGTTGGCCACGGTGGAGGCGGTGGTCGTGGGGATGATGGTGGTTGGAGCGATGATCGGCCTCATGGGGACGATGATTCGTCGAGTTTTGGAGTGTTGGGACTGCTTCTTAAAGGGTGGAGAGCTAGGGTTGCTGCGGATCCACAGTTTCCTTTTAAGGTTTTGATGGAGGAACTTGTTGGTGTGAGTGCTTGTGTTCTTGGAGACATGGCATCTCGCCCGAATTTCGGTCTCAACGAGCTTGATTTTGTCTTCTCCACTCTTGTTGTTGGATCTATACTGAATTTCACTCTCATGTATCTCTTGGCTCCCACTGCTTCAGCTGGTGCAGTAGCCAAGCAGCTTCCTGCAATCTTTGCAAGTTGCCCCACGAGTCACATGTTCGAACCTGGCGCTTTCACGGTCTTGGAACGGTTGGGAACTTTGGTTTACAAAGGAACCGTCTTTGCCTCTGTTGGGCTAGTGGCTGGGCTCGCTGGGACTTTGCTCTCAAATGGTTTGATCAAGTTGAGGAAGAAGATGGATCCCGAATTCGAGACTCCGAACAAGCCTCCTCCTACGATGTTGAATTCCATGACTTGGGCAATTCACATGGGGGTCAGTAGCAACTTGAGATACCAAACTTTGAATGGAGTCGAGTTTTTGTTGGCCAAGGGGACCCCCCCTTTGGTATTCAAGAGCTCTGTGGTGGTGTTGAGATGTTTGAACAATATTCTCGGAGGCATGTCGTTTGTCATCCTTGCGAGGATGACGGGATCACAGAGCATTGAGCCAAAGCCAGCAGCTGTGGAGTTAGTTTCTGCCGATGAGAAAGAGAAGCTGTTGGAAGGGGATAAAGATGAGGATTTAAAGTAAGGTCTTTCTGAAAGAACTTGGTTGGTAGAACTATCATTTTCTCTTTTGTTTCCATTGTTAATATACGCTCCATGCTCTGTGACCAATGATCATTTTACTTTTCTTGCTTGTATCAATAAAAAGCTCAAAGTGTTGTGAGGTTTTTGTTTTTTTGAATTGTTAGATGAGGCTTTGCTGATAGTTTTCATGGAAACTCAATGAGTTGCTTTATGGGCCAAATGTGTCTTTTCTTCTTCTTCTTTTGCTTTAGTTGGAATTATTGATGAACATTTAATCCTTCTTCACCGATACAAAGCTTGTCTCTGGATGTGAGTTTTTTCTTAAA

Coding sequence (CDS)

ATGGCGGCCATGGCTCAGCTGCATTGCTCTATTCGCTCTAGGCACTCCTATAATGTCCCCAATAACCATGCTTACAGTTATAACAACACTCCGGATTTCTCATTTCTATCGAATTTGTCTTCGGTCGAATCAAGGACTCGGTCTCTTTTTCTCTTTAATGGGGATTTAACGAGGCCTTGTTTTTTGCCCAAATCTCAACTCTCTTTTGCTGGTGGGGATGGTGGAAATGGCGTTGGCCACGGTGGAGGCGGTGGTCGTGGGGATGATGGTGGTTGGAGCGATGATCGGCCTCATGGGGACGATGATTCGTCGAGTTTTGGAGTGTTGGGACTGCTTCTTAAAGGGTGGAGAGCTAGGGTTGCTGCGGATCCACAGTTTCCTTTTAAGGTTTTGATGGAGGAACTTGTTGGTGTGAGTGCTTGTGTTCTTGGAGACATGGCATCTCGCCCGAATTTCGGTCTCAACGAGCTTGATTTTGTCTTCTCCACTCTTGTTGTTGGATCTATACTGAATTTCACTCTCATGTATCTCTTGGCTCCCACTGCTTCAGCTGGTGCAGTAGCCAAGCAGCTTCCTGCAATCTTTGCAAGTTGCCCCACGAGTCACATGTTCGAACCTGGCGCTTTCACGGTCTTGGAACGGTTGGGAACTTTGGTTTACAAAGGAACCGTCTTTGCCTCTGTTGGGCTAGTGGCTGGGCTCGCTGGGACTTTGCTCTCAAATGGTTTGATCAAGTTGAGGAAGAAGATGGATCCCGAATTCGAGACTCCGAACAAGCCTCCTCCTACGATGTTGAATTCCATGACTTGGGCAATTCACATGGGGGTCAGTAGCAACTTGAGATACCAAACTTTGAATGGAGTCGAGTTTTTGTTGGCCAAGGGGACCCCCCCTTTGGTATTCAAGAGCTCTGTGGTGGTGTTGAGATGTTTGAACAATATTCTCGGAGGCATGTCGTTTGTCATCCTTGCGAGGATGACGGGATCACAGAGCATTGAGCCAAAGCCAGCAGCTGTGGAGTTAGTTTCTGCCGATGAGAAAGAGAAGCTGTTGGAAGGGGATAAAGATGAGGATTTAAAGTAA

Protein sequence

MAAMAQLHCSIRSRHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTRSLFLFNGDLTRPCFLPKSQLSFAGGDGGNGVGHGGGGGRGDDGGWSDDRPHGDDDSSSFGVLGLLLKGWRARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAGTLLSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGTPPLVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIEPKPAAVELVSADEKEKLLEGDKDEDLK
Homology
BLAST of Sed0004297 vs. NCBI nr
Match: XP_038883563.1 (protein RETICULATA-RELATED 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 590.9 bits (1522), Expect = 7.5e-165
Identity = 310/363 (85.40%), Postives = 330/363 (90.91%), Query Frame = 0

Query: 1   MAAMAQLHCSIRSRHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTRSLFLFNGDLTRPC 60
           MAAMAQLHCS+R RH YNVPNN A  YN+TP FSFLSN S VESR+RSL  FN DLTRP 
Sbjct: 1   MAAMAQLHCSVRPRHHYNVPNNPA--YNSTPAFSFLSNSSVVESRSRSLSFFNADLTRPS 60

Query: 61  FLPKSQLSFAGGDGGNGVGHGG-GGGRGDDGGWSDDRPHGDD-DSSSFGVLGLLLKGWRA 120
           FL KS+LS AGGDGGNGVGHGG GGG G DGGWSDDR HGDD DSSSFGVLGL LKGWR+
Sbjct: 61  FLAKSELSLAGGDGGNGVGHGGRGGGGGGDGGWSDDRTHGDDNDSSSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAGTL 240
           APTA+AGA AKQLPAIFASCPTSHMFEPGAFT+L+RLGT VYKGTVFA+VGL AGL GT 
Sbjct: 181 APTAAAGAAAKQLPAIFASCPTSHMFEPGAFTLLDRLGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGTPP 300
           LSNGLIKLRKKMDP FETPNK PPT+LN+MTWAIHMGVSSNLRYQTLNGVEFLLAKG PP
Sbjct: 241 LSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEFLLAKGLPP 300

Query: 301 LVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIE-PKPAAVELVSADEKEKLLEGDKDE 360
           L FKSSVVVLRCLNN+LGGMSFV+LAR+TGSQS+E PKPA +EL S DEKEKLLEGDK+E
Sbjct: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAVMELDSGDEKEKLLEGDKEE 360

BLAST of Sed0004297 vs. NCBI nr
Match: XP_022156248.1 (protein RETICULATA-RELATED 3, chloroplastic [Momordica charantia])

HSP 1 Score: 583.9 bits (1504), Expect = 9.2e-163
Identity = 310/363 (85.40%), Postives = 330/363 (90.91%), Query Frame = 0

Query: 1   MAAMAQLHCSIRSRHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTRSLFLFNGDLTRPC 60
           MAAMAQLHCS+R R+ YNVP NHA  YNNTP FSFLS+ S ++SRTRSL LF+ DLTRP 
Sbjct: 1   MAAMAQLHCSLRPRNYYNVPCNHA--YNNTPAFSFLSDSSVIQSRTRSLSLFHTDLTRPS 60

Query: 61  FLPKSQLSFA-GGDGGNGVGH-GGGGGRGDDGGWSDDRPHGDDDSSSFGVLGLLLKGWRA 120
           FL KS+LS A GGDGG+GVG  GGGGG GD GGWSDDR HGDDDSSSFGVLGL LKGWR+
Sbjct: 61  FLAKSELSLAGGGDGGDGVGRGGGGGGGGDSGGWSDDRAHGDDDSSSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAGTL 240
           APTA+AG  AKQLPAIF+SCPTSHMFEPGAFTVL+RLGT VYKGTVFA+VGL AGL GT 
Sbjct: 181 APTAAAGVAAKQLPAIFSSCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGTPP 300
           LSNGLIKLRKKMDPEFETPNK PPT+LN++TWAIHMGVSSNLRYQTLNGVEF+LAKG PP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNALTWAIHMGVSSNLRYQTLNGVEFVLAKGLPP 300

Query: 301 LVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIE-PKPAAVELVSADEKEKLLEGDKDE 360
           L FKSSVVVLRCLNN+LGG+SFVILAR TGSQSIE PK AAVEL SADEKEKLLEGDKDE
Sbjct: 301 LAFKSSVVVLRCLNNVLGGVSFVILARATGSQSIEQPKAAAVELDSADEKEKLLEGDKDE 360

BLAST of Sed0004297 vs. NCBI nr
Match: XP_008463291.1 (PREDICTED: protein RETICULATA-RELATED 3, chloroplastic [Cucumis melo] >XP_016903009.1 PREDICTED: protein RETICULATA-RELATED 3, chloroplastic [Cucumis melo] >TYK06219.1 protein RETICULATA-RELATED 3 [Cucumis melo var. makuwa])

HSP 1 Score: 575.5 bits (1482), Expect = 3.3e-160
Identity = 305/365 (83.56%), Postives = 328/365 (89.86%), Query Frame = 0

Query: 1   MAAMAQLHCSIRSRHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTR--SLFLFNGDLTR 60
           MAAMAQLHCS+R R  YNVPNNH   +NNTP FSFLSN S VESR+R  SL LFN DLTR
Sbjct: 1   MAAMAQLHCSVRPRQYYNVPNNH--GFNNTPAFSFLSNSSVVESRSRSLSLSLFNADLTR 60

Query: 61  PCFLPKSQLSFAGGDGGNGVGHGG-GGGRGDDGGWSDDRPHG-DDDSSSFGVLGLLLKGW 120
             +L KS+LS AGGDGGNGVGHGG GGG G DGGWSDDR HG DDDSSSFGVLGL LKGW
Sbjct: 61  RSYLAKSELSLAGGDGGNGVGHGGKGGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGW 120

Query: 121 RARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180
           R+RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY
Sbjct: 121 RSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180

Query: 181 LLAPTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAG 240
           LLAPTA+AGAVAKQLP+IFASCPTSHMFEPGAFT+L+RLGT VYKGTVFA+VGL AGL G
Sbjct: 181 LLAPTAAAGAVAKQLPSIFASCPTSHMFEPGAFTLLDRLGTFVYKGTVFAAVGLAAGLVG 240

Query: 241 TLLSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGT 300
           T LSNGLI LRKKMDP FETPNK PPT+LN+MTWAIHMGVSSNLRYQTLNGVE++LAKG 
Sbjct: 241 TALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGL 300

Query: 301 PPLVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIE-PKPAAVELVSADEKEKLLEGDK 360
           PPL FKSSVVVLRCLNN+LGGMSFV+LAR+TGSQS+E PK A VEL S DEKEKLLEGDK
Sbjct: 301 PPLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKTAGVELDSGDEKEKLLEGDK 360

BLAST of Sed0004297 vs. NCBI nr
Match: XP_022966374.1 (protein RETICULATA-RELATED 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 573.5 bits (1477), Expect = 1.2e-159
Identity = 305/363 (84.02%), Postives = 326/363 (89.81%), Query Frame = 0

Query: 1   MAAMAQLHCSIRSRHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTRSLFLFNGDLTRPC 60
           MA+MAQLHCS+R R+ YNVP++HA  YNN P FSFLSN S+VESR+RSL LFN DLTR  
Sbjct: 1   MASMAQLHCSVRPRNYYNVPSSHA--YNNPPAFSFLSNSSAVESRSRSLSLFNADLTRSR 60

Query: 61  FLPKSQLSFAGGDGGNGVGH--GGGGGRGDDGGWSDDRPHGDDDSSSFGVLGLLLKGWRA 120
           FL KS+LS AGGDGGNGVG   GGGGG GD+GGWSDDR  G DDSSSFGV GL L+GWR 
Sbjct: 61  FLVKSELSLAGGDGGNGVGRGGGGGGGGGDNGGWSDDRADG-DDSSSFGVFGLFLQGWRT 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAGTL 240
           APTASAG  AKQLPAIF SCPTSHMFEPGAFTVLERLGTLVYKGTVFA+VGL AGL GT 
Sbjct: 181 APTASAGVAAKQLPAIFGSCPTSHMFEPGAFTVLERLGTLVYKGTVFATVGLAAGLVGTA 240

Query: 241 LSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGTPP 300
           LSNGLIKLRKKMDPEFETPNK PPT+LN+MTWAIHMGVSSNLRYQ+LNG+EF+LAKG PP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNAMTWAIHMGVSSNLRYQSLNGLEFVLAKGLPP 300

Query: 301 LVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIE-PKPAAVELVSADEKEKLLEGDKDE 360
           L FKSSVVVLRCLNNILGGMSFVILARMTGSQS+E  KPAA++L + D KEKLLEGDKDE
Sbjct: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGSQSVEDAKPAALDLDATDTKEKLLEGDKDE 360

BLAST of Sed0004297 vs. NCBI nr
Match: XP_004142670.1 (protein RETICULATA-RELATED 3, chloroplastic [Cucumis sativus] >KGN54469.1 hypothetical protein Csa_012048 [Cucumis sativus])

HSP 1 Score: 573.2 bits (1476), Expect = 1.6e-159
Identity = 302/365 (82.74%), Postives = 328/365 (89.86%), Query Frame = 0

Query: 1   MAAMAQLHCSIRSRHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTR--SLFLFNGDLTR 60
           MAAMAQLHCS+R R  Y+VPNNH   +NNTP FSFLSN S+VESR+R  SL LFN DLTR
Sbjct: 1   MAAMAQLHCSVRPRQYYSVPNNH--GFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTR 60

Query: 61  PCFLPKSQLSFAGGDGGNGVGHGG-GGGRGDDGGWSDDRPHG-DDDSSSFGVLGLLLKGW 120
           P FL KS+LS AGGDGGNGVGHGG GGG G DGGWSDDR HG DDDSSSFGVLGL LKGW
Sbjct: 61  PSFLAKSELSLAGGDGGNGVGHGGRGGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGW 120

Query: 121 RARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180
           R+RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY
Sbjct: 121 RSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180

Query: 181 LLAPTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAG 240
           LLAPTA+AG  A++LP+IFASCPTSHMFEPGAFT+L+R+GT VYKGTVFA+VGL AGL G
Sbjct: 181 LLAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVG 240

Query: 241 TLLSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGT 300
           T LSNGLI LRKKMDP FETPNK PPT+LN+MTWAIHMGVSSNLRYQTLNGVE++LAKG 
Sbjct: 241 TALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGL 300

Query: 301 PPLVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIE-PKPAAVELVSADEKEKLLEGDK 360
           PPL FKSSVVVLRCLNN+LGGMSFV+LARMTGSQS+E PK A VEL S DEKEKLLEGDK
Sbjct: 301 PPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDK 360

BLAST of Sed0004297 vs. ExPASy Swiss-Prot
Match: Q9C9Z2 (Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER3 PE=1 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 3.4e-104
Identity = 217/353 (61.47%), Postives = 253/353 (71.67%), Query Frame = 0

Query: 1   MAAM-AQLHCSIRS-RHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTRSLFLFNGDLTR 60
           MAAM A+L  S +S + S  +P     S + T   SF  N S     T      +  L +
Sbjct: 1   MAAMAAKLQLSAKSDQSSVRLPRVINLSRDPTTRVSFPRNGSVCSLHTN---FSSPHLAK 60

Query: 61  PCFLPKSQLSFAGGDGGNGVGH--GGGGGRGDDGGWSDDRPHGDDDSSSFGVLGLLLKGW 120
           PC         AGG GG   G+  GG G  G  GG+        ++SS +G +GL ++GW
Sbjct: 61  PC---------AGGGGGGSTGNNGGGSGSGGGGGGFGGSGGEASEESSPWGPIGLFIQGW 120

Query: 121 RARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180
           R+RVAADPQFPFKVLMEE+VG+SACVLGDMASRPNFGLNELDFVFSTLVVGSILNF LMY
Sbjct: 121 RSRVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLMY 180

Query: 181 LLAPTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAG 240
           +LAPTA+    ++ LP IF +CP+SHMFE G+FTV+ R GTLVYKG VFASVGL AGL G
Sbjct: 181 MLAPTAATLGSSQTLPGIFRNCPSSHMFEQGSFTVMNRFGTLVYKGMVFASVGLAAGLVG 240

Query: 241 TLLSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGT 300
           T +SNGLI LRKKMDP FETPNKPPPT+LNS+TWA HMGVS+N RYQTLNG+EFLLAK  
Sbjct: 241 TAISNGLIMLRKKMDPSFETPNKPPPTVLNSLTWATHMGVSANARYQTLNGIEFLLAKVL 300

Query: 301 PPLVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIEPKPAAVELVSADEKEK 350
           PPLVFK+SV+VLRC NN+ GGMSFV+LARMTGSQS+E K          EKEK
Sbjct: 301 PPLVFKTSVIVLRCANNVAGGMSFVLLARMTGSQSVEEK------TEISEKEK 335

BLAST of Sed0004297 vs. ExPASy Swiss-Prot
Match: Q9C9Z3 (Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER2 PE=2 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 3.6e-101
Identity = 218/355 (61.41%), Postives = 252/355 (70.99%), Query Frame = 0

Query: 1   MAAM-AQLHCSIRSRHS-YNVPNNHAYSYNNTPDFSFLSNLSSVESRTRSLFLFNG---D 60
           MAAM A+LH S +S  S   +P               L NLS  +   R LF  NG    
Sbjct: 1   MAAMAAKLHISTKSDQSNVRLPR--------------LINLSR-DPTARVLFPRNGSVSS 60

Query: 61  LTRPCFLPKSQLSFAGGDGGNGVG-HGGGGGRGDDGGWSDDRPHGDDDSSSFGVLGLLLK 120
           L      P   +  AGG GG  +G HGGG G G  GG        +++SS +G LGL ++
Sbjct: 61  LHTNFSSPNIMVPCAGGGGGGSIGNHGGGSGSGGGGGGYGGSE--EEESSPWGPLGLFIQ 120

Query: 121 GWRARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTL 180
           GWR+RVAAD QFPFKVLME LVGVSA VLGDMASRPNFGLNELDFVFSTLVVGSILNFTL
Sbjct: 121 GWRSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELDFVFSTLVVGSILNFTL 180

Query: 181 MYLLAPTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGL 240
           MYLLAP+A +   +  LP IF SCP+SHMFE G FT++ R GTLVYKG VFA+VGL AGL
Sbjct: 181 MYLLAPSAISHGSSNLLPGIFRSCPSSHMFEQGNFTLMNRFGTLVYKGMVFATVGLAAGL 240

Query: 241 AGTLLSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAK 300
            GT +SNGLI LRKK+DP FETPNKPPPT+LNS+TWA HMGVS+N+RYQTLNG EFLL K
Sbjct: 241 VGTAISNGLIMLRKKIDPSFETPNKPPPTLLNSLTWATHMGVSANVRYQTLNGAEFLLEK 300

Query: 301 GTPPLVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIEPKPAAVELVSADEKEK 350
             PPLVFK+SV+ LR +NN+LGGMSFV LARMTGSQS+E +   +E+    EKEK
Sbjct: 301 SLPPLVFKTSVIALRVVNNVLGGMSFVTLARMTGSQSVE-EEKKIEMSEISEKEK 337

BLAST of Sed0004297 vs. ExPASy Swiss-Prot
Match: B9DFK5 (Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-20
Identity = 97/323 (30.03%), Postives = 153/323 (47.37%), Query Frame = 0

Query: 69  FAGGDGGNGVGHGGGGGRGD-DGGWSDDRPHGD--------------------------- 128
           F G DG  G G GG GG GD +G   +++  G                            
Sbjct: 115 FNGSDGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAK 174

Query: 129 -------------DDSSSFGVLGLLLKGW---RARVAADPQFPFKVLMEELVGVSACVLG 188
                        D  SS G+LG  ++ W   R R+ ADP F FK+  E ++      + 
Sbjct: 175 NYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVA 234

Query: 189 DMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA-------PTASAGAVAKQLPAIFAS 248
           ++  R      E +   + L+VG+++N  L+ +LA       P+AS G + + + A + +
Sbjct: 235 EVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFA-YNA 294

Query: 249 CPTSHMFE---PGA-FTVLERLGTLVYKGTVFASVGLVAGLAGTLLSNGLIKLRKKMDPE 308
            P+S +FE   PG  F+  +RL T  YKG ++ +VG   G+ G  ++N ++  ++ ++  
Sbjct: 295 LPSS-VFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINKS 354

Query: 309 FETPNKP-PPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLL-----AKGTPPLVFKSSVVV 331
            E  N P PP + ++  W + + VSSN RYQ +NG+E ++     AK  PP     +V V
Sbjct: 355 EE--NIPVPPLIKSAALWGVFLSVSSNTRYQIINGLERVVEASPFAKKFPPAAMAFTVGV 414

BLAST of Sed0004297 vs. ExPASy Swiss-Prot
Match: Q9FGP9 (Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER1 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-20
Identity = 100/323 (30.96%), Postives = 147/323 (45.51%), Query Frame = 0

Query: 71  GGDGGNGVGHGGGG-GRGDDGGWSDDRPHGD---------------------------DD 130
           GG+GGNG G GGGG G GDDG    D+                               + 
Sbjct: 113 GGNGGNGDGGGGGGDGEGDDGEDEADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEA 172

Query: 131 SSSFGV-----------------LGLLLKG---WRARVAADPQFPFKVLMEELVGVSACV 190
           + S G+                 LG L++     R R+ ADP F FKV  E  +      
Sbjct: 173 AKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRMLADPSFLFKVGTEVAIDSCCAT 232

Query: 191 LGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTASAG-------AVAKQLPAIF 250
             ++  R     +E +   + L+VG +++  L+ LLAP A  G        + K L    
Sbjct: 233 FAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRAC 292

Query: 251 ASCPTSHMFE---PGA-FTVLERLGTLVYKGTVFASVGLVAGLAGTLLSNGLIKLRKKMD 310
           AS P+S +FE   PG  F+V +R+ T  YKG ++ SVG   GL G  ++N LI   K+  
Sbjct: 293 ASLPSS-VFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIAN-LIMTAKRSV 352

Query: 311 PEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGTP----PLVFKSSVVV 331
            + E     PP   ++  W + +G+SSN RYQ +NG+E ++   T     P+V  +  V 
Sbjct: 353 KKSEEDVPIPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVG 412

BLAST of Sed0004297 vs. ExPASy Swiss-Prot
Match: Q94CJ5 (Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER4 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.9e-19
Identity = 96/330 (29.09%), Postives = 145/330 (43.94%), Query Frame = 0

Query: 67  LSFAGGDGGNGVGHGG--GGGRGDDGGWSDDRPHGDDD-SSSFGVLGLLLK--------- 126
           LS + G+GG+    GG  GGG G DGG +D   HGD+D   +     LLLK         
Sbjct: 60  LSASSGNGGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNRNEAMLLLKESGIELESL 119

Query: 127 -------------------------------------GWRARVAADPQFPFKVLMEELVG 186
                                                G+R R+ AD  F  K+ ME  VG
Sbjct: 120 PKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQFGGFRERLLADDLFMAKLAMECGVG 179

Query: 187 VSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTAS--------AGAVAK 246
           +      +   R     NEL+ VF+ + +  I +F L+YL APT S        AG ++K
Sbjct: 180 IFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVSLRPPLALTAGGISK 239

Query: 247 QLPAIFASCPTSHM---FEPGAFTVLERLGTLVYKGTVFASVGLVAGLAGTLLSNGLIKL 306
                F +CP +         ++T+L+RLG +   G    +VG  + L GT ++N  IK 
Sbjct: 240 ----FFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAFIKA 299

Query: 307 RKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGTPPLVFKSSVV 331
           RK +D   E   +  P +  S+ + ++M VSSNLRYQ + GV  +  +   P++ +  + 
Sbjct: 300 RKAVDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGV--IEQRLLEPMLHQHKLA 359

BLAST of Sed0004297 vs. ExPASy TrEMBL
Match: A0A6J1DQ40 (protein RETICULATA-RELATED 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111023180 PE=3 SV=1)

HSP 1 Score: 583.9 bits (1504), Expect = 4.4e-163
Identity = 310/363 (85.40%), Postives = 330/363 (90.91%), Query Frame = 0

Query: 1   MAAMAQLHCSIRSRHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTRSLFLFNGDLTRPC 60
           MAAMAQLHCS+R R+ YNVP NHA  YNNTP FSFLS+ S ++SRTRSL LF+ DLTRP 
Sbjct: 1   MAAMAQLHCSLRPRNYYNVPCNHA--YNNTPAFSFLSDSSVIQSRTRSLSLFHTDLTRPS 60

Query: 61  FLPKSQLSFA-GGDGGNGVGH-GGGGGRGDDGGWSDDRPHGDDDSSSFGVLGLLLKGWRA 120
           FL KS+LS A GGDGG+GVG  GGGGG GD GGWSDDR HGDDDSSSFGVLGL LKGWR+
Sbjct: 61  FLAKSELSLAGGGDGGDGVGRGGGGGGGGDSGGWSDDRAHGDDDSSSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAGTL 240
           APTA+AG  AKQLPAIF+SCPTSHMFEPGAFTVL+RLGT VYKGTVFA+VGL AGL GT 
Sbjct: 181 APTAAAGVAAKQLPAIFSSCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGTPP 300
           LSNGLIKLRKKMDPEFETPNK PPT+LN++TWAIHMGVSSNLRYQTLNGVEF+LAKG PP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNALTWAIHMGVSSNLRYQTLNGVEFVLAKGLPP 300

Query: 301 LVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIE-PKPAAVELVSADEKEKLLEGDKDE 360
           L FKSSVVVLRCLNN+LGG+SFVILAR TGSQSIE PK AAVEL SADEKEKLLEGDKDE
Sbjct: 301 LAFKSSVVVLRCLNNVLGGVSFVILARATGSQSIEQPKAAAVELDSADEKEKLLEGDKDE 360

BLAST of Sed0004297 vs. ExPASy TrEMBL
Match: A0A1S3CIX7 (protein RETICULATA-RELATED 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501484 PE=3 SV=1)

HSP 1 Score: 575.5 bits (1482), Expect = 1.6e-160
Identity = 305/365 (83.56%), Postives = 328/365 (89.86%), Query Frame = 0

Query: 1   MAAMAQLHCSIRSRHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTR--SLFLFNGDLTR 60
           MAAMAQLHCS+R R  YNVPNNH   +NNTP FSFLSN S VESR+R  SL LFN DLTR
Sbjct: 1   MAAMAQLHCSVRPRQYYNVPNNH--GFNNTPAFSFLSNSSVVESRSRSLSLSLFNADLTR 60

Query: 61  PCFLPKSQLSFAGGDGGNGVGHGG-GGGRGDDGGWSDDRPHG-DDDSSSFGVLGLLLKGW 120
             +L KS+LS AGGDGGNGVGHGG GGG G DGGWSDDR HG DDDSSSFGVLGL LKGW
Sbjct: 61  RSYLAKSELSLAGGDGGNGVGHGGKGGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGW 120

Query: 121 RARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180
           R+RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY
Sbjct: 121 RSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180

Query: 181 LLAPTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAG 240
           LLAPTA+AGAVAKQLP+IFASCPTSHMFEPGAFT+L+RLGT VYKGTVFA+VGL AGL G
Sbjct: 181 LLAPTAAAGAVAKQLPSIFASCPTSHMFEPGAFTLLDRLGTFVYKGTVFAAVGLAAGLVG 240

Query: 241 TLLSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGT 300
           T LSNGLI LRKKMDP FETPNK PPT+LN+MTWAIHMGVSSNLRYQTLNGVE++LAKG 
Sbjct: 241 TALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGL 300

Query: 301 PPLVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIE-PKPAAVELVSADEKEKLLEGDK 360
           PPL FKSSVVVLRCLNN+LGGMSFV+LAR+TGSQS+E PK A VEL S DEKEKLLEGDK
Sbjct: 301 PPLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKTAGVELDSGDEKEKLLEGDK 360

BLAST of Sed0004297 vs. ExPASy TrEMBL
Match: A0A5D3C7A3 (Protein RETICULATA-RELATED 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00830 PE=3 SV=1)

HSP 1 Score: 575.5 bits (1482), Expect = 1.6e-160
Identity = 305/365 (83.56%), Postives = 328/365 (89.86%), Query Frame = 0

Query: 1   MAAMAQLHCSIRSRHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTR--SLFLFNGDLTR 60
           MAAMAQLHCS+R R  YNVPNNH   +NNTP FSFLSN S VESR+R  SL LFN DLTR
Sbjct: 1   MAAMAQLHCSVRPRQYYNVPNNH--GFNNTPAFSFLSNSSVVESRSRSLSLSLFNADLTR 60

Query: 61  PCFLPKSQLSFAGGDGGNGVGHGG-GGGRGDDGGWSDDRPHG-DDDSSSFGVLGLLLKGW 120
             +L KS+LS AGGDGGNGVGHGG GGG G DGGWSDDR HG DDDSSSFGVLGL LKGW
Sbjct: 61  RSYLAKSELSLAGGDGGNGVGHGGKGGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGW 120

Query: 121 RARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180
           R+RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY
Sbjct: 121 RSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180

Query: 181 LLAPTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAG 240
           LLAPTA+AGAVAKQLP+IFASCPTSHMFEPGAFT+L+RLGT VYKGTVFA+VGL AGL G
Sbjct: 181 LLAPTAAAGAVAKQLPSIFASCPTSHMFEPGAFTLLDRLGTFVYKGTVFAAVGLAAGLVG 240

Query: 241 TLLSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGT 300
           T LSNGLI LRKKMDP FETPNK PPT+LN+MTWAIHMGVSSNLRYQTLNGVE++LAKG 
Sbjct: 241 TALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGL 300

Query: 301 PPLVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIE-PKPAAVELVSADEKEKLLEGDK 360
           PPL FKSSVVVLRCLNN+LGGMSFV+LAR+TGSQS+E PK A VEL S DEKEKLLEGDK
Sbjct: 301 PPLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKTAGVELDSGDEKEKLLEGDK 360

BLAST of Sed0004297 vs. ExPASy TrEMBL
Match: A0A6J1HTL4 (protein RETICULATA-RELATED 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466041 PE=3 SV=1)

HSP 1 Score: 573.5 bits (1477), Expect = 6.0e-160
Identity = 305/363 (84.02%), Postives = 326/363 (89.81%), Query Frame = 0

Query: 1   MAAMAQLHCSIRSRHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTRSLFLFNGDLTRPC 60
           MA+MAQLHCS+R R+ YNVP++HA  YNN P FSFLSN S+VESR+RSL LFN DLTR  
Sbjct: 1   MASMAQLHCSVRPRNYYNVPSSHA--YNNPPAFSFLSNSSAVESRSRSLSLFNADLTRSR 60

Query: 61  FLPKSQLSFAGGDGGNGVGH--GGGGGRGDDGGWSDDRPHGDDDSSSFGVLGLLLKGWRA 120
           FL KS+LS AGGDGGNGVG   GGGGG GD+GGWSDDR  G DDSSSFGV GL L+GWR 
Sbjct: 61  FLVKSELSLAGGDGGNGVGRGGGGGGGGGDNGGWSDDRADG-DDSSSFGVFGLFLQGWRT 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAGTL 240
           APTASAG  AKQLPAIF SCPTSHMFEPGAFTVLERLGTLVYKGTVFA+VGL AGL GT 
Sbjct: 181 APTASAGVAAKQLPAIFGSCPTSHMFEPGAFTVLERLGTLVYKGTVFATVGLAAGLVGTA 240

Query: 241 LSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGTPP 300
           LSNGLIKLRKKMDPEFETPNK PPT+LN+MTWAIHMGVSSNLRYQ+LNG+EF+LAKG PP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNAMTWAIHMGVSSNLRYQSLNGLEFVLAKGLPP 300

Query: 301 LVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIE-PKPAAVELVSADEKEKLLEGDKDE 360
           L FKSSVVVLRCLNNILGGMSFVILARMTGSQS+E  KPAA++L + D KEKLLEGDKDE
Sbjct: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGSQSVEDAKPAALDLDATDTKEKLLEGDKDE 360

BLAST of Sed0004297 vs. ExPASy TrEMBL
Match: A0A0A0L080 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337260 PE=3 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 7.8e-160
Identity = 302/365 (82.74%), Postives = 328/365 (89.86%), Query Frame = 0

Query: 1   MAAMAQLHCSIRSRHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTR--SLFLFNGDLTR 60
           MAAMAQLHCS+R R  Y+VPNNH   +NNTP FSFLSN S+VESR+R  SL LFN DLTR
Sbjct: 1   MAAMAQLHCSVRPRQYYSVPNNH--GFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTR 60

Query: 61  PCFLPKSQLSFAGGDGGNGVGHGG-GGGRGDDGGWSDDRPHG-DDDSSSFGVLGLLLKGW 120
           P FL KS+LS AGGDGGNGVGHGG GGG G DGGWSDDR HG DDDSSSFGVLGL LKGW
Sbjct: 61  PSFLAKSELSLAGGDGGNGVGHGGRGGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGW 120

Query: 121 RARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180
           R+RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY
Sbjct: 121 RSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180

Query: 181 LLAPTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAG 240
           LLAPTA+AG  A++LP+IFASCPTSHMFEPGAFT+L+R+GT VYKGTVFA+VGL AGL G
Sbjct: 181 LLAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVG 240

Query: 241 TLLSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGT 300
           T LSNGLI LRKKMDP FETPNK PPT+LN+MTWAIHMGVSSNLRYQTLNGVE++LAKG 
Sbjct: 241 TALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGL 300

Query: 301 PPLVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIE-PKPAAVELVSADEKEKLLEGDK 360
           PPL FKSSVVVLRCLNN+LGGMSFV+LARMTGSQS+E PK A VEL S DEKEKLLEGDK
Sbjct: 301 PPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDK 360

BLAST of Sed0004297 vs. TAIR 10
Match: AT3G08640.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 379.8 bits (974), Expect = 2.4e-105
Identity = 217/353 (61.47%), Postives = 253/353 (71.67%), Query Frame = 0

Query: 1   MAAM-AQLHCSIRS-RHSYNVPNNHAYSYNNTPDFSFLSNLSSVESRTRSLFLFNGDLTR 60
           MAAM A+L  S +S + S  +P     S + T   SF  N S     T      +  L +
Sbjct: 1   MAAMAAKLQLSAKSDQSSVRLPRVINLSRDPTTRVSFPRNGSVCSLHTN---FSSPHLAK 60

Query: 61  PCFLPKSQLSFAGGDGGNGVGH--GGGGGRGDDGGWSDDRPHGDDDSSSFGVLGLLLKGW 120
           PC         AGG GG   G+  GG G  G  GG+        ++SS +G +GL ++GW
Sbjct: 61  PC---------AGGGGGGSTGNNGGGSGSGGGGGGFGGSGGEASEESSPWGPIGLFIQGW 120

Query: 121 RARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180
           R+RVAADPQFPFKVLMEE+VG+SACVLGDMASRPNFGLNELDFVFSTLVVGSILNF LMY
Sbjct: 121 RSRVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLMY 180

Query: 181 LLAPTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGLAG 240
           +LAPTA+    ++ LP IF +CP+SHMFE G+FTV+ R GTLVYKG VFASVGL AGL G
Sbjct: 181 MLAPTAATLGSSQTLPGIFRNCPSSHMFEQGSFTVMNRFGTLVYKGMVFASVGLAAGLVG 240

Query: 241 TLLSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGT 300
           T +SNGLI LRKKMDP FETPNKPPPT+LNS+TWA HMGVS+N RYQTLNG+EFLLAK  
Sbjct: 241 TAISNGLIMLRKKMDPSFETPNKPPPTVLNSLTWATHMGVSANARYQTLNGIEFLLAKVL 300

Query: 301 PPLVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIEPKPAAVELVSADEKEK 350
           PPLVFK+SV+VLRC NN+ GGMSFV+LARMTGSQS+E K          EKEK
Sbjct: 301 PPLVFKTSVIVLRCANNVAGGMSFVLLARMTGSQSVEEK------TEISEKEK 335

BLAST of Sed0004297 vs. TAIR 10
Match: AT3G08630.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 369.8 bits (948), Expect = 2.5e-102
Identity = 218/355 (61.41%), Postives = 252/355 (70.99%), Query Frame = 0

Query: 1   MAAM-AQLHCSIRSRHS-YNVPNNHAYSYNNTPDFSFLSNLSSVESRTRSLFLFNG---D 60
           MAAM A+LH S +S  S   +P               L NLS  +   R LF  NG    
Sbjct: 1   MAAMAAKLHISTKSDQSNVRLPR--------------LINLSR-DPTARVLFPRNGSVSS 60

Query: 61  LTRPCFLPKSQLSFAGGDGGNGVG-HGGGGGRGDDGGWSDDRPHGDDDSSSFGVLGLLLK 120
           L      P   +  AGG GG  +G HGGG G G  GG        +++SS +G LGL ++
Sbjct: 61  LHTNFSSPNIMVPCAGGGGGGSIGNHGGGSGSGGGGGGYGGSE--EEESSPWGPLGLFIQ 120

Query: 121 GWRARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTL 180
           GWR+RVAAD QFPFKVLME LVGVSA VLGDMASRPNFGLNELDFVFSTLVVGSILNFTL
Sbjct: 121 GWRSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELDFVFSTLVVGSILNFTL 180

Query: 181 MYLLAPTASAGAVAKQLPAIFASCPTSHMFEPGAFTVLERLGTLVYKGTVFASVGLVAGL 240
           MYLLAP+A +   +  LP IF SCP+SHMFE G FT++ R GTLVYKG VFA+VGL AGL
Sbjct: 181 MYLLAPSAISHGSSNLLPGIFRSCPSSHMFEQGNFTLMNRFGTLVYKGMVFATVGLAAGL 240

Query: 241 AGTLLSNGLIKLRKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAK 300
            GT +SNGLI LRKK+DP FETPNKPPPT+LNS+TWA HMGVS+N+RYQTLNG EFLL K
Sbjct: 241 VGTAISNGLIMLRKKIDPSFETPNKPPPTLLNSLTWATHMGVSANVRYQTLNGAEFLLEK 300

Query: 301 GTPPLVFKSSVVVLRCLNNILGGMSFVILARMTGSQSIEPKPAAVELVSADEKEK 350
             PPLVFK+SV+ LR +NN+LGGMSFV LARMTGSQS+E +   +E+    EKEK
Sbjct: 301 SLPPLVFKTSVIALRVVNNVLGGMSFVTLARMTGSQSVE-EEKKIEMSEISEKEK 337

BLAST of Sed0004297 vs. TAIR 10
Match: AT2G37860.3 (Protein of unknown function (DUF3411) )

HSP 1 Score: 102.1 bits (253), Expect = 9.8e-22
Identity = 97/323 (30.03%), Postives = 153/323 (47.37%), Query Frame = 0

Query: 69  FAGGDGGNGVGHGGGGGRGD-DGGWSDDRPHGD--------------------------- 128
           F G DG  G G GG GG GD +G   +++  G                            
Sbjct: 115 FNGSDGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAK 174

Query: 129 -------------DDSSSFGVLGLLLKGW---RARVAADPQFPFKVLMEELVGVSACVLG 188
                        D  SS G+LG  ++ W   R R+ ADP F FK+  E ++      + 
Sbjct: 175 NYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVA 234

Query: 189 DMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA-------PTASAGAVAKQLPAIFAS 248
           ++  R      E +   + L+VG+++N  L+ +LA       P+AS G + + + A + +
Sbjct: 235 EVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFA-YNA 294

Query: 249 CPTSHMFE---PGA-FTVLERLGTLVYKGTVFASVGLVAGLAGTLLSNGLIKLRKKMDPE 308
            P+S +FE   PG  F+  +RL T  YKG ++ +VG   G+ G  ++N ++  ++ ++  
Sbjct: 295 LPSS-VFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINKS 354

Query: 309 FETPNKP-PPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLL-----AKGTPPLVFKSSVVV 331
            E  N P PP + ++  W + + VSSN RYQ +NG+E ++     AK  PP     +V V
Sbjct: 355 EE--NIPVPPLIKSAALWGVFLSVSSNTRYQIINGLERVVEASPFAKKFPPAAMAFTVGV 414

BLAST of Sed0004297 vs. TAIR 10
Match: AT5G22790.1 (reticulata-related 1 )

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-21
Identity = 100/323 (30.96%), Postives = 147/323 (45.51%), Query Frame = 0

Query: 71  GGDGGNGVGHGGGG-GRGDDGGWSDDRPHGD---------------------------DD 130
           GG+GGNG G GGGG G GDDG    D+                               + 
Sbjct: 113 GGNGGNGDGGGGGGDGEGDDGEDEADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEA 172

Query: 131 SSSFGV-----------------LGLLLKG---WRARVAADPQFPFKVLMEELVGVSACV 190
           + S G+                 LG L++     R R+ ADP F FKV  E  +      
Sbjct: 173 AKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRMLADPSFLFKVGTEVAIDSCCAT 232

Query: 191 LGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTASAG-------AVAKQLPAIF 250
             ++  R     +E +   + L+VG +++  L+ LLAP A  G        + K L    
Sbjct: 233 FAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRAC 292

Query: 251 ASCPTSHMFE---PGA-FTVLERLGTLVYKGTVFASVGLVAGLAGTLLSNGLIKLRKKMD 310
           AS P+S +FE   PG  F+V +R+ T  YKG ++ SVG   GL G  ++N LI   K+  
Sbjct: 293 ASLPSS-VFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIAN-LIMTAKRSV 352

Query: 311 PEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGTP----PLVFKSSVVV 331
            + E     PP   ++  W + +G+SSN RYQ +NG+E ++   T     P+V  +  V 
Sbjct: 353 KKSEEDVPIPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVG 412

BLAST of Sed0004297 vs. TAIR 10
Match: AT5G12470.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 95.9 bits (237), Expect = 7.1e-20
Identity = 96/330 (29.09%), Postives = 145/330 (43.94%), Query Frame = 0

Query: 67  LSFAGGDGGNGVGHGG--GGGRGDDGGWSDDRPHGDDD-SSSFGVLGLLLK--------- 126
           LS + G+GG+    GG  GGG G DGG +D   HGD+D   +     LLLK         
Sbjct: 60  LSASSGNGGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNRNEAMLLLKESGIELESL 119

Query: 127 -------------------------------------GWRARVAADPQFPFKVLMEELVG 186
                                                G+R R+ AD  F  K+ ME  VG
Sbjct: 120 PKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQFGGFRERLLADDLFMAKLAMECGVG 179

Query: 187 VSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTAS--------AGAVAK 246
           +      +   R     NEL+ VF+ + +  I +F L+YL APT S        AG ++K
Sbjct: 180 IFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVSLRPPLALTAGGISK 239

Query: 247 QLPAIFASCPTSHM---FEPGAFTVLERLGTLVYKGTVFASVGLVAGLAGTLLSNGLIKL 306
                F +CP +         ++T+L+RLG +   G    +VG  + L GT ++N  IK 
Sbjct: 240 ----FFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAFIKA 299

Query: 307 RKKMDPEFETPNKPPPTMLNSMTWAIHMGVSSNLRYQTLNGVEFLLAKGTPPLVFKSSVV 331
           RK +D   E   +  P +  S+ + ++M VSSNLRYQ + GV  +  +   P++ +  + 
Sbjct: 300 RKAVDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGV--IEQRLLEPMLHQHKLA 359

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038883563.17.5e-16585.40protein RETICULATA-RELATED 3, chloroplastic [Benincasa hispida][more]
XP_022156248.19.2e-16385.40protein RETICULATA-RELATED 3, chloroplastic [Momordica charantia][more]
XP_008463291.13.3e-16083.56PREDICTED: protein RETICULATA-RELATED 3, chloroplastic [Cucumis melo] >XP_016903... [more]
XP_022966374.11.2e-15984.02protein RETICULATA-RELATED 3, chloroplastic [Cucurbita maxima][more]
XP_004142670.11.6e-15982.74protein RETICULATA-RELATED 3, chloroplastic [Cucumis sativus] >KGN54469.1 hypoth... [more]
Match NameE-valueIdentityDescription
Q9C9Z23.4e-10461.47Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
Q9C9Z33.6e-10161.41Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
B9DFK51.4e-2030.03Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=... [more]
Q9FGP92.4e-2030.96Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
Q94CJ59.9e-1929.09Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
Match NameE-valueIdentityDescription
A0A6J1DQ404.4e-16385.40protein RETICULATA-RELATED 3, chloroplastic OS=Momordica charantia OX=3673 GN=LO... [more]
A0A1S3CIX71.6e-16083.56protein RETICULATA-RELATED 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501... [more]
A0A5D3C7A31.6e-16083.56Protein RETICULATA-RELATED 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A6J1HTL46.0e-16084.02protein RETICULATA-RELATED 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A0A0L0807.8e-16082.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337260 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G08640.12.4e-10561.47Protein of unknown function (DUF3411) [more]
AT3G08630.12.5e-10261.41Protein of unknown function (DUF3411) [more]
AT2G37860.39.8e-2230.03Protein of unknown function (DUF3411) [more]
AT5G22790.11.7e-2130.96reticulata-related 1 [more]
AT5G12470.17.1e-2029.09Protein of unknown function (DUF3411) [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021825Protein RETICULATA-relatedPFAMPF11891RETICULATA-likecoord: 119..288
e-value: 1.8E-65
score: 220.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..101
NoneNo IPR availablePANTHERPTHR31620:SF17PROTEIN RETICULATA-RELATED 3, CHLOROPLASTIC-LIKEcoord: 1..341
NoneNo IPR availablePANTHERPTHR31620PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATEDcoord: 1..341

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004297.1Sed0004297.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0016021 integral component of membrane