Sed0004247 (gene) Chayote v1

Overview


Name	Sed0004247
Type	gene
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S12
Location	LG05: 44261816 .. 44264397 (-)
RNA-Seq Expression	Sed0004247
Synteny	Sed0004247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGCCAATTCCAGAATTAGGGTTTTTCCATCGGCATTTCTTCTTCATAAAAACCCTTAACTTCTCCTTGGCCAAATTTGCTGCGCCGTTGATTCCTCAGTTCCATCGGTCTCTACGCTGTTCTCAAAGTCGTCTCCTAACCCTATCTTTCATCTCTTTATTCAATTTGTTTGCTCCTTTTTTTCTGATTATATTTAGCGTTTTCGTGCAACAGGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCGTGAGTGACAACTTGTTTATTATACTAATTGCAAACTTCCCTTTTAATTCCCATGGCTGTTTTTATTTTTCAAGTTATTGAATTCATGTCCATGTTTTCCGTTTTTGTCTGGGTTTTCAATATTTTAGTGATCGACGATGCTTTGTTTTTGTTAAGTAGAATTTGAAGCTTGTAATCAACTATTCTAGATTGTGGATGGGAAATAAGTTGTAAGTTGAAACTTGATTGGTGAAGGGGCATGCGATATTTTTCTTTTGAAACAAGGGTAACCATGCCCGTCCGTAGGCCAGACACCGGAGACAACAAAGGAGTAATGTCACAGGTGAGACTTGAACCTGGGTCGAACCTGGGACCTTAAGGGGAGCGTCACAGGTGAGACTTGAACCTGGGTCGAACTTGGGACCTTAAGGGGAGCATACCCTTAAAGGGTCTTCAACCACTGCCCCACCCCTTGGGGACGGGGCATGCGATAAATTGTTGATGCCTAGAGATAAAAACTATATTTTGAGCTTAAGTTATGAAAAATATGAAACTTGGAAGAATAATATGTGATTTTTGTGTTCATTATTTACCTTAGTTTGTTAGGATTGAAAGATCATTGTGTTACTTGTCTGGGAGTGAGCTGCTGTTGAGGTTTCTTTTATTATTGGCTTAGTATTTGCTACCAATCGCTATATATTGCCTTTGATTGGTTGACTGCAGTAGGTCATAGAAAAATGTCATCTCTTTTAACTCAATTTTCTTATGCAGTGATGAAGGTGCAGTTGTTGTCGAGGCTCCGGCCCCAGCCCCAGCTCTTGGTGAGCCGATGGACATTGATACCGCTTTGCAACTTGTTCTTCGAAAATCATTAGCTCATGGTGGGCTTATTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGTGGCTCAGCTTTGCGTCTTGGGAGAAGACTGTAACCAGCCAGATTATGTTAAACTAGTCAAGGCACTTTGTGCTGAGCACAATGTAAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCTGGTGTAAGTTTTTATCTTATTTAGCCATCAAGATTAAAATGGTTCAATTTTGGATATTTTTTTTTCATTTCGGTCATCACTTAATGTTATTCCACGATGATTGAACATGTACCTAGCAATACTTGGGTACATGTTCTTTCTGGTTGATACTTAGTGGATCAAAAGTTTAAATTGATGAGTTGGAGAAAATTTAATTATATCAAGTAGCACTATCCTTGTGAGCTTAGAAATTTTGAAAATGCCCATCAAGTGGCAATTAATATTAATTGGGGTTGAAATGACTTGGAAGAGGCTTGAAATCATACTGAATTGTGTTAAATCAATCAAACCAAAAGTTTTAGCGGATGGGTTGGAGTAAATTTAATTATGTCAACAAATATTTATATAGATAACCTCTTCATGCATAATCAACAAAGTTCATTTTTGCTTCTAATATTTGCATTCTGCACCATCTATTTGAGTTTGATTTAAGATGCAATTAATATTTGTATACGATCGAAAGTTTTCTCTCATCTGAATTCATGATAACAAGTCATTTTCCTTCACATTTTGTCTAATACAGCTATGCAAGATTGATTCTGAAGGGAAGGCTAGGAAGGTTGTTGGGTGCTCTTGTGTCGTAGTTAAGGTACGGCTAATGTTCACGTCCGAGAAAATGTTATGTTCCTTCTTTTGTTTCAAAACCATTTTTGTTTACTTGTCCTCGAGGGATGATGCAATGGTTGAAGACTTGGGCTTTGAGGGTATGCTCCTCTTAAGGTCCCAGGTTCGAGACTCACCTATGACACTATTTTTTCGATGTCTTGGATGCCTGGCCTAGGAATAGGGCGTGGTTACCTTGTTTAAAAAAAAAAACCATTTTTGTATACTTGAATTTTGAATTTCTATCTTCAGGACTACGGGGAGGATCATGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGCTGATTATCTCAATGATGGTGTCTGTTGGTGTCACTAAGAAAGTTTTTGATCTTTACTTATGTTTAGGTTTGTTCCCTGTTTTTGCTGAACATGATTTACCCTATAATGTTTTTCTTTGTTCCTTCATTGGAAAGATTTCCAGCAAACAGAACATAAGTTATTTATCAAGATTCTTCTTGCCTAGGGTAAAAGGGAATTGAATTTTTATCTTCTTTTTGGAGATTGGTCTTCTTTAGTTATTTAACCTATACAAGGGGGAAAGTGAGGGGAAACCAATCTACAAATAGAAATCAGACAAGAGGGTTTTTATTATTAGTATTATTTGTTTTTAATT

mRNA sequence

GTCGCCAATTCCAGAATTAGGGTTTTTCCATCGGCATTTCTTCTTCATAAAAACCCTTAACTTCTCCTTGGCCAAATTTGCTGCGCCGTTGATTCCTCAGTTCCATCGGTCTCTACGCTGTTCTCAAAGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCTGATGAAGGTGCAGTTGTTGTCGAGGCTCCGGCCCCAGCCCCAGCTCTTGGTGAGCCGATGGACATTGATACCGCTTTGCAACTTGTTCTTCGAAAATCATTAGCTCATGGTGGGCTTATTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGTGGCTCAGCTTTGCGTCTTGGGAGAAGACTGTAACCAGCCAGATTATGTTAAACTAGTCAAGGCACTTTGTGCTGAGCACAATGTAAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGGAAGGCTAGGAAGGTTGTTGGGTGCTCTTGTGTCGTAGTTAAGGACTACGGGGAGGATCATGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGCTGATTATCTCAATGATGGTGTCTGTTGGTGTCACTAAGAAAGTTTTTGATCTTTACTTATGTTTAGGTTTGTTCCCTGTTTTTGCTGAACATGATTTACCCTATAATGTTTTTCTTTGTTCCTTCATTGGAAAGATTTCCAGCAAACAGAACATAAGTTATTTATCAAGATTCTTCTTGCCTAGGGTAAAAGGGAATTGAATTTTTATCTTCTTTTTGGAGATTGGTCTTCTTTAGTTATTTAACCTATACAAGGGGGAAAGTGAGGGGAAACCAATCTACAAATAGAAATCAGACAAGAGGGTTTTTATTATTAGTATTATTTGTTTTTAATT

Coding sequence (CDS)

ATGTCAGCTGATGAAGGTGCAGTTGTTGTCGAGGCTCCGGCCCCAGCCCCAGCTCTTGGTGAGCCGATGGACATTGATACCGCTTTGCAACTTGTTCTTCGAAAATCATTAGCTCATGGTGGGCTTATTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGTGGCTCAGCTTTGCGTCTTGGGAGAAGACTGTAACCAGCCAGATTATGTTAAACTAGTCAAGGCACTTTGTGCTGAGCACAATGTAAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGGAAGGCTAGGAAGGTTGTTGGGTGCTCTTGTGTCGTAGTTAAGGACTACGGGGAGGATCATGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGCTGA

Protein sequence

MSADEGAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGEDHEALHIVQKHVSSS

Homology

[Close]

BLAST of Sed0004247 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQL 60
           MSADEGAVVVE  APAPALGEPMDI+TALQLVLRKSLAHGGL+RGLHESAKAIEKH AQL
Sbjct: 1   MSADEGAVVVE--APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDYGEDHEALHIVQKHVSSS 143
           VVKD+GEDHEALHIVQKHVSSS
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Sed0004247 vs. NCBI nr
Match: KAG6571063.1 (40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQL 60
           MSADEGAVVVE  APAPALGEPMDI+TALQLVLRKSLAHGGL+RGLHESAKAIEKH AQL
Sbjct: 48  MSADEGAVVVE--APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 107

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 108 CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 167

Query: 121 VVKDYGEDHEALHIVQKHVSSS 143
           VVKD+GEDHEALHIVQKHVSSS
Sbjct: 168 VVKDFGEDHEALHIVQKHVSSS 187

[Close]

BLAST of Sed0004247 vs. NCBI nr
Match: XP_022986724.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQL 60
           MSADEGAVV+E  APAPALGEPMDI+TALQLVLRKSLAHGGL+RGLHESAKAIEKH AQL
Sbjct: 1   MSADEGAVVIE--APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDYGEDHEALHIVQKHVSSS 143
           VVKD+GEDHEALHIVQKHVSSS
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Sed0004247 vs. NCBI nr
Match: XP_038901505.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 271.9 bits (694), Expect = 3.0e-69
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQL 60
           MSADEGAVVVE  APAPALGEPMDI+TALQLVLRKSLAHGGL+RGLHESAKAIEKH AQL
Sbjct: 1   MSADEGAVVVE--APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDYGEDHEALHIVQKHVSSS 143
           VVKD+GEDHEALHIVQKHVSS+
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Sed0004247 vs. NCBI nr
Match: XP_022944351.1 (40S ribosomal protein S12-like [Cucurbita moschata])

HSP 1 Score: 271.9 bits (694), Expect = 3.0e-69
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQL 60
           MSADEGAV+VE  APAPALGEPMDI+TALQLVLRKSLAHGGL+RGLHESAKAIEKH AQL
Sbjct: 1   MSADEGAVLVE--APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDYGEDHEALHIVQKHVSSS 143
           VVKD+GEDHEALHIVQKHVSSS
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Sed0004247 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-55
Identity = 106/141 (75.18%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 3   ADEGAVVVEAP--APAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQL 62
           A+E    V AP  AP P LGEPMD+ TALQLV++KS AH GL++GL E+AK+IEKH AQL
Sbjct: 2   AEEAPAPVVAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQL 61

Query: 63  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 122
           CVL EDC+QPDYVKLVKALCAEHNV+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+
Sbjct: 62  CVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCI 121

Query: 123 VVKDYGEDHEALHIVQKHVSS 142
           VVKDYGE+ E L+IVQ++V S
Sbjct: 122 VVKDYGEESEGLNIVQQYVKS 142

[Close]

BLAST of Sed0004247 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.3e-51
Identity = 100/144 (69.44%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MSADE--GAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVA 60
           MS DE   A VV   A A  + E MD+ TAL+L +RKS A+GG++RGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDYGEDHEALHIVQKHVSSS 143
           C+V+KD+GE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Sed0004247 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 8.6e-51
Identity = 102/143 (71.33%), Postives = 116/143 (81.12%), Query Frame = 0


Query: 1   MSADEGAVVVEAP--APAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVA 60
           MS DE A VV  P  A   A+ E MD+ TAL+L LRK+ A+GG++RGLHE AK IEK VA
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDYGEDHEALHIVQKHVSS 142
           C+VVKD+GE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Sed0004247 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.9e-37
Identity = 72/121 (59.50%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 18  ALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQLCVLGEDCNQPDYVKLVK 77
           A G  MD++TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 78  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGEDHEALHIVQK 137
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKDYG++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 138 H 139
           +
Sbjct: 127 Y 127

[Close]

BLAST of Sed0004247 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 156.8 bits (395), Expect = 1.9e-37
Identity = 72/121 (59.50%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 18  ALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQLCVLGEDCNQPDYVKLVK 77
           A G  MD++TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 78  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGEDHEALHIVQK 137
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKDYG++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 138 H 139
           +
Sbjct: 127 Y 127

[Close]

BLAST of Sed0004247 vs. ExPASy TrEMBL
Match: A0A6J1JGV5 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.6e-70
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQL 60
           MSADEGAVV+E  APAPALGEPMDI+TALQLVLRKSLAHGGL+RGLHESAKAIEKH AQL
Sbjct: 1   MSADEGAVVIE--APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDYGEDHEALHIVQKHVSSS 143
           VVKD+GEDHEALHIVQKHVSSS
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Sed0004247 vs. ExPASy TrEMBL
Match: A0A6J1FU69 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111448818 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQL 60
           MSADEGAV+VE  APAPALGEPMDI+TALQLVLRKSLAHGGL+RGLHESAKAIEKH AQL
Sbjct: 1   MSADEGAVLVE--APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDYGEDHEALHIVQKHVSSS 143
           VVKD+GEDHEALHIVQKHVSSS
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Sed0004247 vs. ExPASy TrEMBL
Match: A0A6J1KYK1 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111497545 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.9e-69
Identity = 134/142 (94.37%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQL 60
           MSADEGAVVVE  APAPALGEPMDI+TALQLVLRKSLAHGGL+RGLHESAKAIEKH AQL
Sbjct: 1   MSADEGAVVVE--APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDY+KLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDYGEDHEALHIVQKHVSSS 143
           VVKD+GEDHEALHIVQKHVSS+
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Sed0004247 vs. ExPASy TrEMBL
Match: A0A6J1G761 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111451391 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.5e-69
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQL 60
           MSADEGAVVVE  APAPALGEPMDI+TALQLVLRKSLAHGGL+RGLHESAKAIEKH AQL
Sbjct: 1   MSADEGAVVVE--APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDYGEDHEALHIVQKHVSSS 143
           VVKD+GEDHEALHIVQKHVSSS
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Sed0004247 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.3e-69
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVAQL 60
           MSADEGAVV E  APAPALGEPMDI+TALQLVLRKSLAHGGL+RGLHESAKAIEKH AQL
Sbjct: 1   MSADEGAVVAE--APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDYGEDHEALHIVQKHVSSS 143
           VVKD+GEDHEALHIVQKHVSS+
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Sed0004247 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-52
Identity = 100/144 (69.44%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MSADE--GAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVA 60
           MS DE   A VV   A A  + E MD+ TAL+L +RKS A+GG++RGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDYGEDHEALHIVQKHVSSS 143
           C+V+KD+GE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Sed0004247 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-52
Identity = 100/144 (69.44%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MSADE--GAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVA 60
           MS DE   A VV   A A  + E MD+ TAL+L +RKS A+GG++RGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDYGEDHEALHIVQKHVSSS 143
           C+V+KD+GE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Sed0004247 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-52
Identity = 100/144 (69.44%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MSADE--GAVVVEAPAPAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVA 60
           MS DE   A VV   A A  + E MD+ TAL+L +RKS A+GG++RGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDYGEDHEALHIVQKHVSSS 143
           C+V+KD+GE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Sed0004247 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.1 bits (510), Expect = 6.1e-52
Identity = 102/143 (71.33%), Postives = 116/143 (81.12%), Query Frame = 0


Query: 1   MSADEGAVVVEAP--APAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVA 60
           MS DE A VV  P  A   A+ E MD+ TAL+L LRK+ A+GG++RGLHE AK IEK VA
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDYGEDHEALHIVQKHVSS 142
           C+VVKD+GE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Sed0004247 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.1 bits (510), Expect = 6.1e-52
Identity = 102/143 (71.33%), Postives = 116/143 (81.12%), Query Frame = 0


Query: 1   MSADEGAVVVEAP--APAPALGEPMDIDTALQLVLRKSLAHGGLIRGLHESAKAIEKHVA 60
           MS DE A VV  P  A   A+ E MD+ TAL+L LRK+ A+GG++RGLHE AK IEK VA
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDYGEDHEALHIVQKHVSS 142
           C+VVKD+GE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:

BLAST of Sed0004247 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512603.1	1.4e-69	95.77	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]	[more]
KAG6571063.1	1.4e-69	95.77	40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022986724.1	1.8e-69	95.07	40S ribosomal protein S12-like [Cucurbita maxima]	[more]
XP_038901505.1	3.0e-69	95.07	40S ribosomal protein S12-like [Benincasa hispida]	[more]
XP_022944351.1	3.0e-69	95.07	40S ribosomal protein S12-like [Cucurbita moschata]	[more]

BLAST of Sed0004247 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	1.2e-55	75.18	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	2.3e-51	69.44	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	8.6e-51	71.33	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	1.9e-37	59.50	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	1.9e-37	59.50	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of Sed0004247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JGV5	8.6e-70	95.07	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1	[more]
A0A6J1FU69	1.5e-69	95.07	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111448818 PE=3 SV=...	[more]
A0A6J1KYK1	1.9e-69	94.37	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111497545 PE=3 SV=1	[more]
A0A6J1G761	2.5e-69	95.07	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111451391 PE=3 SV=...	[more]
A0A5D3BJY5	4.3e-69	94.37	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Sed0004247 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	1.6e-52	69.44	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	1.6e-52	69.44	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	1.6e-52	69.44	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	6.1e-52	71.33	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	6.1e-52	71.33	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 32..45 score: 55.19 coord: 112..125 score: 85.06 coord: 46..62 score: 48.13 coord: 87..108 score: 57.85
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 11..141
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 28..46
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 28..121 e-value: 2.9E-27 score: 94.2
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 9..142 e-value: 1.8E-53 score: 181.4
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 21..140
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 11..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004247.1	Sed0004247.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome