Sed0004170 (gene) Chayote v1

Overview
NameSed0004170
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG03: 46122380 .. 46125867 (-)
RNA-Seq ExpressionSed0004170
SyntenySed0004170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACAATTATATTTACTCCATTTATGAATGGAAACATAGTTTATGGGTCAAATGGTATTCAATATGATGCTCCGCCGCATGGACAAATGAGTGCTAGTCGATATATTGGATTCGACTCATTCATGAACAAGTTATGCGAATGCCTTTTGATTGATAGAAATGAAGGGTTAGAGGTTGTTTTTAAATACCAGGGTATTGGGATAACTATACGAAGTGAGAGTGAATTCAATTTTATGATAAATACGGCTACTTCCCAACCAGTAGAACTATATGTTTCTCAACCATTATTTCAGAGGACACAATTGAGAGATATAGAGAACAATTTAGAAGGGCAACGTCTTGATGAAGAAGAAATTGAGGAACCAGAGGAGAATAATGGCCAGAATATAAACGATGCAGAGGAAAATACCACCAATGTTGTCAACATGTTGGCCACAAATGACATAGAGGTGAATACAGATGATGATGGATCGATCCAAGGTTTTGACGAAGTCCCTTCATTTTATACCACCTTAGATATGGATGTTATTGACTCGCTTCCAGATAGAGGCATTGATGAAGAGGTTAGAGGACCTGATAAATTGTTAAAAGGAATGATTTTTTAATCAAAAGATGATTTAAAAAATGCAGTTAAGAGATACACGGTCATTCATCATCAACATTTTTATGTACTCGAATCCAAGAAAAAGAAATGGATTGTTCAATGTAATATGTATGATAGTGGTTGTAAGTGGAGACTCCGTGCCACATGTTTAAAAAAACATGGAAAATTTGAAATAACACAATTCAATGATGTTCATACTTGTGTTTACGCAAGACTAAGTCAAGATCATCACCAATTAGATGTCAATTTAATTGCTGCAGAAGTGCATGACATCATTCAGGCTGATCCTACTACCAAGGTGAAGGCATTACAAACAATGATACTGGAAAAATATGGATATAAAATATCATATACAAAAAGCATGGAATGGTAGAAGGAAAACAATTGAGAAAATATTTGGAGATTGGGAGGAGTCATACAATCTTCTACCAAGTGGACAAACGTCCTACAAATGACCAACCCTAAGTCAATAGTCCAATATAAATGGAAAACATTGGAAGGAAGCAATCAAGATGTCCAATTTGATAGTGTGTTTTGGGCATTTGGACCATCTATTGAAGGGTTCAAGCACTGCAGACCTTTGTTGCAGATAGATGGTACCCACTTATATGGAAAATATAAGGGAAAACTCTTGATTGCAACAAATGTTGACGCTGATGGTCATATATTCCAGCTTGCATTTGCGATTGTACTTGAGGAGAGTACTGAATCATGGAGCTGGTTTTTAGGATTACTATGGACAGATGTTGTGCACAAGCGAAAGGGAATATGCATTATTTCATATAGGCATAAGGGCATCATAGCTGCCATTCGAGATTGTGAGTGGGAAGATATGCATCATCGATTCTGTTTACGACACATTTGCTCCAACTTCAACCAAAAGTACAAGAATGATGAGTTAAAGAAATTGGTTTACTCTGTTGGGGCACACTTTATCCCACGCAAGTACAAAAAATTGATGCGCGAACTCGAGATGGCCGATAGTGGGTGCATGCGCTTCTTTAACTCCTTAGATCCTATTCAATGGACACAATCACACGATGATGGTCATCGATATGGGTGGTTAACTACCAATGTAGTTGAATCAATTAATGGGGTGCTCAAATGAGCTAGGAAACTTCCTATATGTGCATTGGTTCAAGCAACATTTTATAGAACAGTGAAATACTTTACCGAGAGACGTGTCCATATAGAAGCATCTATTGCAGAAGGAAGACTTTTCACAAGGTAATTTCTTCAAGCATAAATCTCATTTCATTTTTTTATGTTTTGATAACTATTGATCTGTAAGTGTGCTAAATTTCCAGGTATGTTATGAAAAAATTACAACCTTCAGAAGAACGTGTTGATCGACATACAGTTAGCATCTACAATCATACATTAGGATACTGTGATGTCACAACAAGGAGGAATGAAACCACATTTTAAGATAGAACACTACATAAGGCGAAGATACACAAAAAAACTTGTAGTTGCAACAAATGGCAATCTTTTGGGATTCCATGTTCTCATGTAATAGCTGCATGTAAGGCATTGCACATTGATTACTTGGACCTTATACAAGATTACTATCATTTGGCAACCTATTCGAAGTGTTATTCATCTGAATTTGAAGGCATTCCTGATAGACGTGATTGGCCGGAGATTGAATGTTTAAATTTACATCCAAATCCTATGACAGTGAGACAAAAGGGTTGTCCATGTACGTCTCGTATCAGAAATGAAATGGACTGGAGGGAGCCAATAGTCTCTCAAAATTATGGCATATGTGGATTGGAAGGACATAATCGTAGGAAATGTCCTCATGCAGACCCTTCTAGACAAACATAGTCTATGTATACCTTGTAATTTTTGTATTTTTGAACAATATGCATTATATGTAGCATTTTCAAACATTCTATTATATTTAAACATGCGTACTTATCCATTTTCTCAATCATTTTTCTAGATGGATGATAATATATTGACAGGACCATACGATAGATCAGTTCTTATCCTCCAAGAAAAACATCGATCTAATTTAGCATGGGAGGACTTTTTAGGTGGTGCACTACATTGTAGACATCGAGAAGCTATTTTCCGACGAGATTTAGATGGACCAGACCCTCGTATATTGCCATATTTGAGAGCCGCTGGATTCTATGGGGCCTCACAAATCAACTTCATCAAGCTTGATTGGCAATTACTCACTGCATTAATAGAGCGATGGCGCCAAGAGACTCATACATTTCATCTGCCACACGGGGAGTGCACAATTACACTCCAGGATGTGGCCATTCAATTTGGCCTCCCAATAAGAGGTCATGCATTGATTGGTTCTATTAATTTAGACTGGCCAGCTATTTGTCATGACCTTTTAGGGGTTACAACGAATAACTTTGTATTGACTGGCGGTCGTTTGAGTTTACCTTGGTTAGCTGAACAATTTAACCATTTTGAACATCTTCCAGAAGAGGCAGTTGAAGAAGATGTCCAGAGATATGCACGAGCATATATATTGAGCCTCTTTAGGGGTATGTTGTTCACTGATCTTTCGAACACGAAGGTACATTTGATGTATCTTCCTCTACTCGAGGACTTTAATGAAGCGGGCAGGTATAGTTGGGGAGTAGGATGTCTAGCATGGTTGTACAGACAACTATACAAAGCATCACACATTGATGCAAAAGATTCGAGCGGCCCCTTGATACTTGTACAAATATGGGCATGGGATCAATTTCCTACATTAGCCCCTCGGCGAAGACATCAATAACTGAATCAGTTAGGAGATCGACCATTAGGAACAAGGTAATGGACTTACTTGAGCTTACATATTATCATACAACTCAATATATATGTTTTCTAAATCTCAATTCATAACATTTGCAGATGGAACGATGA

mRNA sequence

ATGGAGACAATTATATTTACTCCATTTATGAATGGAAACATAGTTTATGGGTCAAATGGTATTCAATATGATGCTCCGCCGCATGGACAAATGAGTGCTAGTCGATATATTGGATTCGACTCATTCATGAACAAGTTATGCGAATGCCTTTTGATTGATAGAAATGAAGGGTTAGAGGTTGTTTTTAAATACCAGGGTATTGGGATAACTATACGAAGTGAGAGTGAATTCAATTTTATGATAAATACGGCTACTTCCCAACCAGTAGAACTATATGTTTCTCAACCATTATTTCAGAGGACACAATTGAGAGATATAGAGAACAATTTAGAAGGGCAACGTCTTGATGAAGAAGAAATTGAGGAACCAGAGGAGAATAATGGCCAGAATATAAACGATGCAGAGGAAAATACCACCAATGTTGTCAACATGTTGGCCACAAATGACATAGAGGTGAATACAGATGATGATGGATCGATCCAAGGTTTTGACGAAGTCCCTTCATTTTATACCACCTTAGATATGGATGTTATTGACTCGCTTCCAGATAGAGGCATTGATGAAGAGATGGAACGATGA

Coding sequence (CDS)

ATGGAGACAATTATATTTACTCCATTTATGAATGGAAACATAGTTTATGGGTCAAATGGTATTCAATATGATGCTCCGCCGCATGGACAAATGAGTGCTAGTCGATATATTGGATTCGACTCATTCATGAACAAGTTATGCGAATGCCTTTTGATTGATAGAAATGAAGGGTTAGAGGTTGTTTTTAAATACCAGGGTATTGGGATAACTATACGAAGTGAGAGTGAATTCAATTTTATGATAAATACGGCTACTTCCCAACCAGTAGAACTATATGTTTCTCAACCATTATTTCAGAGGACACAATTGAGAGATATAGAGAACAATTTAGAAGGGCAACGTCTTGATGAAGAAGAAATTGAGGAACCAGAGGAGAATAATGGCCAGAATATAAACGATGCAGAGGAAAATACCACCAATGTTGTCAACATGTTGGCCACAAATGACATAGAGGTGAATACAGATGATGATGGATCGATCCAAGGTTTTGACGAAGTCCCTTCATTTTATACCACCTTAGATATGGATGTTATTGACTCGCTTCCAGATAGAGGCATTGATGAAGAGATGGAACGATGA

Protein sequence

METIIFTPFMNGNIVYGSNGIQYDAPPHGQMSASRYIGFDSFMNKLCECLLIDRNEGLEVVFKYQGIGITIRSESEFNFMINTATSQPVELYVSQPLFQRTQLRDIENNLEGQRLDEEEIEEPEENNGQNINDAEENTTNVVNMLATNDIEVNTDDDGSIQGFDEVPSFYTTLDMDVIDSLPDRGIDEEMER
Homology
[Close]
BLAST of Sed0004170 vs. NCBI nr
Match: XP_038877923.1 (uncharacterized protein LOC120070133 [Benincasa hispida])

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-09
Identity = 60/207 (28.99%), Postives = 101/207 (48.79%), Query Frame = 0 

Query: 1   METIIFTPFMNGNIVYGSNGIQYDAPPHGQMSASRYIGFDSFMNKLCECLLIDRNEGLEV 60
           M+ + F  +M+GNIV G +GI+YD  P  +++  R   F++ ++   +   I+R++ +EV
Sbjct: 1   MDVVEFLCYMHGNIVNGPSGIEYDRQPSLRINMHRQDDFNTLIDGFYDAYSINRDDVVEV 60

Query: 61  VFKYQG--------IGITIRSESEFNFMINTATSQP--VELYVSQPLFQRTQLRDIENNL 120
           +F+Y          I I++RS+ +  FM++ A   P  VELY+SQP            ++
Sbjct: 61  IFRYGSYVARSTFHIPISLRSDIDVQFMMSNAPYPPNRVELYISQP------------SV 120

Query: 121 EGQRLDEEEIEEPEENNGQNINDAEENTTNVVNMLATNDIEVNTDDD--------GSIQG 180
                  EE+E  E  +   + D   + T     +ATND EV  DDD            G
Sbjct: 121 PSPTSTREEVETVELES-HVVEDEHYDPT-----IATNDEEVKMDDDDIDLDQLSSQFYG 180

Query: 181 FDEVPSFYTTLDMDVIDSLPDRGIDEE 190
             EVP  +T +D++ + + PD    E+
Sbjct: 181 VHEVPETFTEIDLNEMTTEPDSTTGED 189

The following BLAST results are available for this feature:
BLAST of Sed0004170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038877923.12.1e-0928.99uncharacterized protein LOC120070133 [Benincasa hispida][more]
BLAST of Sed0004170 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0004170 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0004170 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004170.1Sed0004170.1mRNA