Sed0003974 (gene) Chayote v1

Overview


Name	Sed0003974
Type	gene
Organism	Sechium edule (Chayote v1)
Description	AAI domain-containing protein
Location	LG09: 33580141 .. 33581423 (+)
RNA-Seq Expression	Sed0003974
Synteny	Sed0003974

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACACTCAAAACTTGCTCAACTTAACACAATGGCAATAGCTCGAAAGGCGGCGGTGATAGTAATGGCGATACTTGTGGTCGTTTCGGGGGCAATGGCGGGAATGGACATGTGCGGTGTGAACGAGGACGGTCTCACGGCATGCAAGCCATGGGTGACGAAACCGTGCCCTACCGAGCTGCCACCGGCCGCCTGTTGCAACGGCCTATCGAAGGCTGACTTTGGATGCTTTTGCAACTATAAGCACTCTCTATTGCTGTCCTCATTTGGGATTGATCCTGATCTTGCTCTTGCTTTGCCAGCCAAGTGCAACCTCCCCAAGGCCCCCTCTTGCTGATTGCTAAAATATAAAAAACTTGTTAAGGTTTAATTAATTCTCAATTTTAATTCTCCTCATTTTGAAAAATATATATTAATCTGCTGTTTTGAAATTAATCTGCTGTTTTTTTTTTCATTTCACTTACAACGGTTTTTATCTTCTTTTAATCAAACAATTAAATTTTTAGTCAATTTTCAAAAACTTTTTTTTTTTTGAATTTTCAAAACTTTTGTTAGTTGGTGAAGTAACAAAACCATAGACAAGAAAAGTAGCAACAGACTGAATTTTAATAAATAAAATATTAAAGATTCGTTTGATAATCATTGTATTATCTAAATCCTAACTAGATTTCAAAAACTAAAATAAGTTTTTGGAAATTGTTCTTTTTAGTGTTGAAATTTTAGTTTAATATTTAAAAATATTGTTAAAATGTAGATGTCAAAGTGAATAAAATTATTATCTCAAAAAAAAAGCCAATAAAATTATAAACCGAAATAATACTAACTAATGAGCCAGTGGCGCAGTAGTTTTACAAATAGTAGATGTAAGCTTCATTATTACAAAATAAAAAATAAATAGCCATGAAACCCGAGGCTTAAATAAATCACATGACCATAATTTTTTTTTTTTTCTTCTCGTTTTTTAAGCTAAAATGTGAATTTTTCTTTTTCAAATTATTGTTTAATGAAGCAAATTCTTTGTTAGATTGTTGTATTTAATTTGTGTCTTGTTGCTGCAGGGTGTGAGTGGAACTACAAGTGGAAGTTCACGACGTTGGGCATCACTTATCTTATGTGTAATTTTGCTATTCAATTTGTATTTTTTTTTAAAAATGTATTTTCTATTTTTCGTGAAAAGTTTAATTGTGTTGTTCTTTTTAGATAAGGTAATATGTAGTTATCCACTTGCTGCTCAGTTGGCTAATTTAACTTTGTTGAATAATATTGTTTTTCGTATTTGGGTTT

mRNA sequence

ACACACTCAAAACTTGCTCAACTTAACACAATGGCAATAGCTCGAAAGGCGGCGGTGATAGTAATGGCGATACTTGTGGTCGTTTCGGGGGCAATGGCGGGAATGGACATGTGCGGTGTGAACGAGGACGGTCTCACGGCATGCAAGCCATGGGTGACGAAACCGTGCCCTACCGAGCTGCCACCGGCCGCCTGTTGCAACGGCCTATCGAAGGCTGACTTTGGATGCTTTTGCAACTATAAGCACTCTCTATTGCTGTCCTCATTTGGGATTGATCCTGATCTTGCTCTTGCTTTGCCAGCCAAGTGCAACCTCCCCAAGGCCCCCTCTTGCTGATTGCTAAAATATAAAAAACTTGTTAAGGGTGTGAGTGGAACTACAAGTGGAAGTTCACGACGTTGGGCATCACTTATCTTATGTGTAATTTTGCTATTCAATTTGTATTTTTTTTTAAAAATGTATTTTCTATTTTTCGTGAAAAGTTTAATTGTGTTGTTCTTTTTAGATAAGGTAATATGTAGTTATCCACTTGCTGCTCAGTTGGCTAATTTAACTTTGTTGAATAATATTGTTTTTCGTATTTGGGTTT

Coding sequence (CDS)

ATGGCAATAGCTCGAAAGGCGGCGGTGATAGTAATGGCGATACTTGTGGTCGTTTCGGGGGCAATGGCGGGAATGGACATGTGCGGTGTGAACGAGGACGGTCTCACGGCATGCAAGCCATGGGTGACGAAACCGTGCCCTACCGAGCTGCCACCGGCCGCCTGTTGCAACGGCCTATCGAAGGCTGACTTTGGATGCTTTTGCAACTATAAGCACTCTCTATTGCTGTCCTCATTTGGGATTGATCCTGATCTTGCTCTTGCTTTGCCAGCCAAGTGCAACCTCCCCAAGGCCCCCTCTTGCTGA

Protein sequence

MAIARKAAVIVMAILVVVSGAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLSKADFGCFCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC

Homology

[Close]

BLAST of Sed0003974 vs. NCBI nr
Match: KAG6593049.1 (putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 7   AAVIVMAILVVVSGAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLSKADFGC 66
           A  + M +LV +SGA+A MD+CGV++DGLTACKPWVTKPCPTELPPAACC+GLSKADFGC
Sbjct: 4   AMAMTMVMLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGC 63

Query: 67  FCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
           FCNYKHSL+L S GIDPDLALALPAKC+LP +PSC
Sbjct: 64  FCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 98

[Close]

BLAST of Sed0003974 vs. NCBI nr
Match: KAG7025457.1 (putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 7   AAVIVMAILVVVSGAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLSKADFGC 66
           A  + M +LV +SGA+A MD+CGV++DGLTACKPWVTKPCPTELPPAACC+GLSKADFGC
Sbjct: 10  AMAMTMVMLVSLSGALAEMDVCGVSQDGLTACKPWVTKPCPTELPPAACCDGLSKADFGC 69

Query: 67  FCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
           FCNYKHSL+L S GIDPDLALALPAKC+LP +PSC
Sbjct: 70  FCNYKHSLVLPSLGIDPDLALALPAKCSLPNSPSC 104

[Close]

BLAST of Sed0003974 vs. NCBI nr
Match: KAE8646276.1 (hypothetical protein Csa_016013 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 3.3e-33
Identity = 69/101 (68.32%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MAIARKAAVIVMAILVVVSGAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLS 60
           M +A+K  V+V+ ILV ++G    M++CGV+EDGLTACKPWVTKPCP E+PPAACCN LS
Sbjct: 29  MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS 88

Query: 61  KADFGCFCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
            ADF CFC YK+S+LLSSFGID DLALALP KCN+P  P+C
Sbjct: 89  NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 129

[Close]

BLAST of Sed0003974 vs. NCBI nr
Match: KAA0041998.1 (putative lipid-transfer protein DIR1 [Cucumis melo var. makuwa] >TYK17933.1 putative lipid-transfer protein DIR1 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 9.5e-33
Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MAIARKAAVIVMAILVVVSGAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLS 60
           M +A K  ++ + ILV ++G    M+MCGV+E+GLTACKPWVTKPCPTE+PPA CCN LS
Sbjct: 1   MEMALKVKIMAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60

Query: 61  KADFGCFCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
            ADF CFC YK+S+LLSSFGIDPDLALALP KCN+   P+C
Sbjct: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTC 101

[Close]

BLAST of Sed0003974 vs. NCBI nr
Match: XP_008447223.1 (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 1.6e-32
Identity = 67/101 (66.34%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1   MAIARKAAVIVMAILVVVSGAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLS 60
           M +A K  +  + ILV ++G    M+MCGV+E+GLTACKPWVTKPCPTE+PPA CCN LS
Sbjct: 1   MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60

Query: 61  KADFGCFCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
            ADF CFC YK+S+LLSSFGIDPDLALALP KCN+   P+C
Sbjct: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTC 101

[Close]

BLAST of Sed0003974 vs. ExPASy Swiss-Prot
Match: Q8W453 (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana OX=3702 GN=DIR1 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.7e-19
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 4   ARKAAVIVMAILVVVS---GAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLS 63
           ++KAA+++MA++V+++        +D+CG+++D L  CKP V+K  PT  P   CC  L 
Sbjct: 3   SKKAAMVMMAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTS-PSQPCCTALQ 62

Query: 64  KADFGCFCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
            ADF C C YK+S  L SFG+DP+LA ALP +C L  AP+C
Sbjct: 63  HADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

[Close]

BLAST of Sed0003974 vs. ExPASy TrEMBL
Match: A0A0A0K4Q7 (AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G372360 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.6e-33
Identity = 69/101 (68.32%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MAIARKAAVIVMAILVVVSGAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLS 60
           M +A+K  V+V+ ILV ++G    M++CGV+EDGLTACKPWVTKPCP E+PPAACCN LS
Sbjct: 1   MEMAQKVTVMVVLILVGLAGISIAMEVCGVDEDGLTACKPWVTKPCPAEMPPAACCNKLS 60

Query: 61  KADFGCFCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
            ADF CFC YK+S+LLSSFGID DLALALP KCN+P  P+C
Sbjct: 61  NADFDCFCKYKNSMLLSSFGIDSDLALALPVKCNIPNTPTC 101

[Close]

BLAST of Sed0003974 vs. ExPASy TrEMBL
Match: A0A5D3D158 (Putative lipid-transfer protein DIR1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002300 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.6e-33
Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MAIARKAAVIVMAILVVVSGAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLS 60
           M +A K  ++ + ILV ++G    M+MCGV+E+GLTACKPWVTKPCPTE+PPA CCN LS
Sbjct: 1   MEMALKVKIMAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60

Query: 61  KADFGCFCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
            ADF CFC YK+S+LLSSFGIDPDLALALP KCN+   P+C
Sbjct: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTC 101

[Close]

BLAST of Sed0003974 vs. ExPASy TrEMBL
Match: A0A6J1DS99 (putative lipid-transfer protein DIR1 OS=Momordica charantia OX=3673 GN=LOC111023061 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.8e-33
Identity = 66/95 (69.47%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 7   AAVIVMAILVVVSGAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLSKADFGC 66
           A  + +A+LV ++G    +++CGV+EDGLTACKPWVTKPCPT+ PP ACCNGLSKADFGC
Sbjct: 9   ALAVAVAVLVSLAGISGAVNVCGVDEDGLTACKPWVTKPCPTDPPPVACCNGLSKADFGC 68

Query: 67  FCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
           FCNYK+SL+L S GI+P+LALALPAKC LP AP C
Sbjct: 69  FCNYKNSLVLPSLGIEPNLALALPAKCGLPSAPPC 103

[Close]

BLAST of Sed0003974 vs. ExPASy TrEMBL
Match: A0A1S3BHS9 (putative lipid-transfer protein DIR1 OS=Cucumis melo OX=3656 GN=LOC103489717 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.8e-33
Identity = 67/101 (66.34%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1   MAIARKAAVIVMAILVVVSGAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLS 60
           M +A K  +  + ILV ++G    M+MCGV+E+GLTACKPWVTKPCPTE+PPA CCN LS
Sbjct: 1   MEMALKVKITAVVILVGIAGISIAMEMCGVDEEGLTACKPWVTKPCPTEMPPATCCNKLS 60

Query: 61  KADFGCFCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
            ADF CFC YK+S+LLSSFGIDPDLALALP KCN+   P+C
Sbjct: 61  NADFSCFCKYKNSMLLSSFGIDPDLALALPVKCNITNTPTC 101

[Close]

BLAST of Sed0003974 vs. ExPASy TrEMBL
Match: A0A6J1JMR4 (putative lipid-transfer protein DIR1 OS=Cucurbita maxima OX=3661 GN=LOC111488290 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.1e-32
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 3   IARKAAVIVMAILVVVSGAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLSKA 62
           IA K AVIVM ++ +   AMA +D+CGVN+D L ACKPWV KPCPTELPPAACC+GLSKA
Sbjct: 4   IASKVAVIVM-VVSLAEMAMA-VDVCGVNKDDLKACKPWVMKPCPTELPPAACCDGLSKA 63

Query: 63  DFGCFCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
           D GCFC YKHS+LLSS GID DLALALPAKC+LP  PSC
Sbjct: 64  DLGCFCKYKHSMLLSSLGIDLDLALALPAKCSLPNTPSC 100

[Close]

BLAST of Sed0003974 vs. TAIR 10
Match: AT5G48485.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 3.4e-20
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 4   ARKAAVIVMAILVVVS---GAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLS 63
           ++KAA+++MA++V+++        +D+CG+++D L  CKP V+K  PT  P   CC  L 
Sbjct: 3   SKKAAMVMMAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTS-PSQPCCTALQ 62

Query: 64  KADFGCFCNYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
            ADF C C YK+S  L SFG+DP+LA ALP +C L  AP+C
Sbjct: 63  HADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

[Close]

BLAST of Sed0003974 vs. TAIR 10
Match: AT5G48490.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-16
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 9   VIVMAILVVVSGAMAGMDMCGVNEDGLTACKPWVTKPCPTELPPAACCNGLSKADFGCFC 68
           VIVM +  +V      +D+CG+ +  L  C P V+K  PT  P   CCN L  AD+ C C
Sbjct: 10  VIVMVMASLVVERSVAIDLCGMTQAELNECLPAVSKNNPTS-PSLLCCNALKHADYTCLC 69

Query: 69  NYKHSLLLSSFGIDPDLALALPAKCNLPKAPSC 102
            YK+S  L SFG+DP LA +LP +C+L  AP+C
Sbjct: 70  GYKNSPWLGSFGVDPKLASSLPKECDLTNAPTC 101

The following BLAST results are available for this feature:

BLAST of Sed0003974 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593049.1	1.7e-37	78.95	putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. sor...	[more]
KAG7025457.1	1.7e-37	78.95	putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. arg...	[more]
KAE8646276.1	3.3e-33	68.32	hypothetical protein Csa_016013 [Cucumis sativus]	[more]
KAA0041998.1	9.5e-33	66.34	putative lipid-transfer protein DIR1 [Cucumis melo var. makuwa] >TYK17933.1 puta...	[more]
XP_008447223.1	1.6e-32	66.34	PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo]	[more]

BLAST of Sed0003974 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W453	4.7e-19	45.54	Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana OX=3702 GN=DIR1 PE=...	[more]

BLAST of Sed0003974 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4Q7	1.6e-33	68.32	AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G372360 PE=4 SV...	[more]
A0A5D3D158	4.6e-33	66.34	Putative lipid-transfer protein DIR1 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DS99	7.8e-33	69.47	putative lipid-transfer protein DIR1 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A1S3BHS9	7.8e-33	66.34	putative lipid-transfer protein DIR1 OS=Cucumis melo OX=3656 GN=LOC103489717 PE=...	[more]
A0A6J1JMR4	5.1e-32	73.74	putative lipid-transfer protein DIR1 OS=Cucurbita maxima OX=3661 GN=LOC111488290...	[more]

BLAST of Sed0003974 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48485.1	3.4e-20	45.54	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G48490.1	1.7e-16	45.16	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 38..101 e-value: 2.2E-5 score: 33.9
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 15..101 e-value: 5.8E-10 score: 39.2
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 24..101 e-value: 1.7E-19 score: 71.5
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 28..99
None	No IPR available	PANTHER	PTHR33122:SF63	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN	coord: 8..101
IPR039265	Putative lipid-transfer protein DIR1-like	PANTHER	PTHR33122	LIPID BINDING PROTEIN-RELATED	coord: 8..101
IPR044741	Non-specific lipid-transfer protein-like	CDD	cd04660	nsLTP_like	coord: 28..100 e-value: 6.91654E-17 score: 67.009

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003974.1	Sed0003974.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009627	systemic acquired resistance
molecular_function	GO:0005504	fatty acid binding