Sed0003696 (gene) Chayote v1

Overview


Name	Sed0003696
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Gibberellin-regulated protein 2
Location	LG01: 12188492 .. 12189979 (-)
RNA-Seq Expression	Sed0003696
Synteny	Sed0003696

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTCGCTTTCTTCTTCTTCTCCCACTTTTCTTTTTCCACTGTCTTTCACAGGTTCACTTTCTACCCCTTCTCACCCTATCAGCTTTTCTTTTCATTTTCTATATTATTTTCATTTTTATCAATTTTTTTCGAACCTAAAAACTTTTAGGTCGTTAGGTGTATACTGATGCCGCTTGAACTATTGCTCCATTGACTTTATTTTTATCAATTTGTGTTTCATTTCTCACCATTTATTTTCAAAGTTTGGGTTTTTTTTTTCTAAAAGAAAGAAGTTTTTTTCTAGAATATAAAAAAAAAATAAAGTTTTAAAACAAACTTATTATTATTTTTGTTTAAAACTTCCTTTTGTGTTTTAAATCATCTCTAAAGGTAGGCAAAATAAACAACAAGAATTACCAAGATTTATTTTAAGTTAATTTAGTTTAATATTAAAAAACTTAATGCAAGAAAGAAAACACACTTCAAAATTTTTTAGACAAAAAGTAAAAGGGAGTCAATTTTTAAGAAAAATTACCAAGAAATCTATCACATATATCCCTTTTTTTTATTGTACTCTGATTTAGAGTCTAATATCAATTTTTAAGATCGATCGTAAGTACGAAGTTAGAATGAATTACATACTAAACAATAAAATAAGCACACCATCCATATCTATCTATTTTAAACTTCCAATAAATTGGATATCCAAAGAGATAATGACCAAAATAGAATGGTAGCCACCGACCTACAGTTATCCTTACAAAGTTTATAGACTAAAAAAATACTTAGAACCAAATTGAAATGATTATCAAACGCCTAAGCTTTTCATAAAAATATTTGTTTTTTTTTTAATCTTATTTATTGACCTATGTTGAATATGATGCAGGTATCTTCAGATGGATACTTAGCAGAACGAGAAGCGATGACTAAAGATGACGGGGAAGCTGTGAGAGGGCCAAACAAACGGATGATGGTGAACATAGGTGAGAAATGAAAGGGAAAAACAACAATGAAATGAAATATAATAAAGTGTGAACATATATATATATATATATATATATATATATATATATTATAATGTCTGTGTGTTTGAAATCAAAATGAATTGGGGTTTATGGTATGCAGATTGTGGATGGGAGTGCAAGCGGCGGTGTGGGGCGCATTCGAGGCCGAACCGATGCCTAAGGGCGTGCGGTACGTGCTGCTTCCGCTGTCATTGCGTGCCCCCGGGCACCTCGGGGAACCGTGAGATGTGCGGCACTTGCTACACCACCATGACCACCCATGCTAACAAGCTCAAGTGCCCTTAATTCCCCTCCCTAGCTAATTTCTCTCTTTTCCCTTTTTAATTTTGTCCAATCTCAATGCTTTTATTTTATTTTATTTTGGAAAAACAATGCTTCTATTTACGTTTATGTTCTTTCCAAGTTTGATTATCAAATGTACCAATTATGTTTTCTTCTCCCATTATAAATATTAGCATGTCTGAGCATAGCTTATGAA

mRNA sequence

ATGGCGGTTCGCTTTCTTCTTCTTCTCCCACTTTTCTTTTTCCACTGTCTTTCACAGGTATCTTCAGATGGATACTTAGCAGAACGAGAAGCGATGACTAAAGATGACGGGGAAGCTGTGAGAGGGCCAAACAAACGGATGATGGTGAACATAGATTGTGGATGGGAGTGCAAGCGGCGGTGTGGGGCGCATTCGAGGCCGAACCGATGCCTAAGGGCGTGCGGTACGTGCTGCTTCCGCTGTCATTGCGTGCCCCCGGGCACCTCGGGGAACCGTGAGATGTGCGGCACTTGCTACACCACCATGACCACCCATGCTAACAAGCTCAAGTGCCCTTAATTCCCCTCCCTAGCTAATTTCTCTCTTTTCCCTTTTTAATTTTGTCCAATCTCAATGCTTTTATTTTATTTTATTTTGGAAAAACAATGCTTCTATTTACGTTTATGTTCTTTCCAAGTTTGATTATCAAATGTACCAATTATGTTTTCTTCTCCCATTATAAATATTAGCATGTCTGAGCATAGCTTATGAA

Coding sequence (CDS)

ATGGCGGTTCGCTTTCTTCTTCTTCTCCCACTTTTCTTTTTCCACTGTCTTTCACAGGTATCTTCAGATGGATACTTAGCAGAACGAGAAGCGATGACTAAAGATGACGGGGAAGCTGTGAGAGGGCCAAACAAACGGATGATGGTGAACATAGATTGTGGATGGGAGTGCAAGCGGCGGTGTGGGGCGCATTCGAGGCCGAACCGATGCCTAAGGGCGTGCGGTACGTGCTGCTTCCGCTGTCATTGCGTGCCCCCGGGCACCTCGGGGAACCGTGAGATGTGCGGCACTTGCTACACCACCATGACCACCCATGCTAACAAGCTCAAGTGCCCTTAA

Protein sequence

MAVRFLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP

Homology

[Close]

BLAST of Sed0003696 vs. NCBI nr
Match: XP_008438104.1 (PREDICTED: snakin-2-like isoform X2 [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-38
Identity = 81/118 (68.64%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 1   MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTK---DDGEAVRGPNKRMMVNIDCG 60
           MAVR    LLLL +F F CLSQ+SSDGY  +   M +   D+ + +RG N+R+M  IDCG
Sbjct: 1   MAVRKFLLLLLLGVFVFLCLSQISSDGYQDQEAGMKEMEYDEDQVMRGANRRLMQYIDCG 60

Query: 61  WECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP 113
            ECKRRCGAHSRPNRC+RACGTCC RC CVPPGTSGNREMCGTCYT+MTTH NK KCP
Sbjct: 61  GECKRRCGAHSRPNRCIRACGTCCRRCRCVPPGTSGNREMCGTCYTSMTTHGNKTKCP 118

[Close]

BLAST of Sed0003696 vs. NCBI nr
Match: XP_038895055.1 (snakin-2-like [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 6.4e-38
Identity = 81/115 (70.43%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 1   MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWEC 60
           MAVR    LLLL LF    LSQVSSDGY  E     + D + +RG N+R+M NI+CGWEC
Sbjct: 1   MAVRNFLLLLLLGLFVILSLSQVSSDGYPEEGMMEMEYDEKVMRGTNRRLMQNINCGWEC 60

Query: 61  KRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP 113
           KRRCGAHSRPNRC+RACGTCC RC CVP GTSGNREMCGTCYT MTTH NK KCP
Sbjct: 61  KRRCGAHSRPNRCIRACGTCCSRCKCVPSGTSGNREMCGTCYTNMTTHGNKTKCP 115

[Close]

BLAST of Sed0003696 vs. NCBI nr
Match: KGN64291.1 (hypothetical protein Csa_013222 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 7.0e-37
Identity = 78/115 (67.83%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWEC 60
           MAVR    LLLL +F F CLSQVSS+GY  E     + D + +RG N+R+M  IDCG +C
Sbjct: 1   MAVRKFLLLLLLGVFVFLCLSQVSSNGYEEEGMKEMEYDEKMMRGANRRLMQYIDCGGQC 60

Query: 61  KRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP 113
           +RRCGAHSRPNRC+RACGTCC RC CVPPGTSGNREMCGTCYT+MTTH N+ KCP
Sbjct: 61  RRRCGAHSRPNRCIRACGTCCRRCRCVPPGTSGNREMCGTCYTSMTTHGNRTKCP 115

[Close]

BLAST of Sed0003696 vs. NCBI nr
Match: XP_023542413.1 (snakin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 77/113 (68.14%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 1   MAVRFLLLLPLFFFHCLSQVS-SDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKR 60
           MA RFLLLL +  F CLS  S   G +   +      G  VR PN+R+M  IDCGWECKR
Sbjct: 1   MAARFLLLLGVLAFLCLSPASVLHGAVVGFDGNPGGGGGTVRRPNERVMTKIDCGWECKR 60

Query: 61  RCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP 113
           RCGAHSRPNRCLR CGTCC RC+CVPPGTSGNREMCGTCYT MTTH NK KCP
Sbjct: 61  RCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP 113

[Close]

BLAST of Sed0003696 vs. NCBI nr
Match: XP_008438094.1 (PREDICTED: snakin-2-like isoform X1 [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 81/126 (64.29%), Postives = 92/126 (73.02%), Query Frame = 0


Query: 1   MAVR---FLLLLPLFFFHCLS--------QVSSDGYLAEREAMTK---DDGEAVRGPNKR 60
           MAVR    LLLL +F F CLS        Q+SSDGY  +   M +   D+ + +RG N+R
Sbjct: 1   MAVRKFLLLLLLGVFVFLCLSQLRRTHITQISSDGYQDQEAGMKEMEYDEDQVMRGANRR 60

Query: 61  MMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHA 113
           +M  IDCG ECKRRCGAHSRPNRC+RACGTCC RC CVPPGTSGNREMCGTCYT+MTTH 
Sbjct: 61  LMQYIDCGGECKRRCGAHSRPNRCIRACGTCCRRCRCVPPGTSGNREMCGTCYTSMTTHG 120

[Close]

BLAST of Sed0003696 vs. ExPASy Swiss-Prot
Match: P46687 (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 50/112 (44.64%), Postives = 63/112 (56.25%), Query Frame = 0


Query: 1   MAVRFLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRR 60
           MA+    L+ L    CL+      + AE   +    GE V        V IDCG  CK R
Sbjct: 1   MAIFRSTLVLLLILFCLTTFELHVHAAEDSQV----GEGV--------VKIDCGGRCKGR 60

Query: 61  CGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP 113
           C   SRPN CLRAC +CC+RC+CVPPGT+GN  +C  CY ++TT   +LKCP
Sbjct: 61  CSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKCP 99

[Close]

BLAST of Sed0003696 vs. ExPASy Swiss-Prot
Match: Q93X17 (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-18
Identity = 41/62 (66.13%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 51  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLK 110
           IDCG  C  RC   SRP  C RACGTCC RC+CVPPGTSGN E C  CY ++TTH NK K
Sbjct: 44  IDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETC-PCYASLTTHGNKRK 103

Query: 111 CP 113
           CP
Sbjct: 104 CP 104

[Close]

BLAST of Sed0003696 vs. ExPASy Swiss-Prot
Match: Q9LFR3 (Gibberellin-regulated protein 14 OS=Arabidopsis thaliana OX=3702 GN=GASA14 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-18
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 51  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLK 110
           IDC   C  RCG HSR N C+RAC TCC+RC CVPPGT GN+E CG+CY  M T   K K
Sbjct: 214 IDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSK 273

Query: 111 CP 113
           CP
Sbjct: 274 CP 275

[Close]

BLAST of Sed0003696 vs. ExPASy Swiss-Prot
Match: P46688 (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.8e-18
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 48  MVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHAN 107
           +V IDCG  CK RC   SR   CLRAC +CC RC+CVPPGTSGN  +C  CY ++TTH  
Sbjct: 36  VVKIDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGG 95

Query: 108 KLKCP 113
           +LKCP
Sbjct: 96  RLKCP 99

[Close]

BLAST of Sed0003696 vs. ExPASy Swiss-Prot
Match: F4IQJ4 (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-16
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 51  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLK 110
           IDC   C+ RC   SRPN C RACGTCC RC+CV PGTSGN + C  CY ++TTH  + K
Sbjct: 34  IDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKC-PCYGSLTTHGGRRK 93

Query: 111 CP 113
           CP
Sbjct: 94  CP 94

[Close]

BLAST of Sed0003696 vs. ExPASy TrEMBL
Match: A0A1S3AVJ9 (snakin-2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483303 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.2e-39
Identity = 81/118 (68.64%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 1   MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTK---DDGEAVRGPNKRMMVNIDCG 60
           MAVR    LLLL +F F CLSQ+SSDGY  +   M +   D+ + +RG N+R+M  IDCG
Sbjct: 1   MAVRKFLLLLLLGVFVFLCLSQISSDGYQDQEAGMKEMEYDEDQVMRGANRRLMQYIDCG 60

Query: 61  WECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP 113
            ECKRRCGAHSRPNRC+RACGTCC RC CVPPGTSGNREMCGTCYT+MTTH NK KCP
Sbjct: 61  GECKRRCGAHSRPNRCIRACGTCCRRCRCVPPGTSGNREMCGTCYTSMTTHGNKTKCP 118

[Close]

BLAST of Sed0003696 vs. ExPASy TrEMBL
Match: A0A0A0LW79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045890 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.4e-37
Identity = 78/115 (67.83%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWEC 60
           MAVR    LLLL +F F CLSQVSS+GY  E     + D + +RG N+R+M  IDCG +C
Sbjct: 1   MAVRKFLLLLLLGVFVFLCLSQVSSNGYEEEGMKEMEYDEKMMRGANRRLMQYIDCGGQC 60

Query: 61  KRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP 113
           +RRCGAHSRPNRC+RACGTCC RC CVPPGTSGNREMCGTCYT+MTTH N+ KCP
Sbjct: 61  RRRCGAHSRPNRCIRACGTCCRRCRCVPPGTSGNREMCGTCYTSMTTHGNRTKCP 115

[Close]

BLAST of Sed0003696 vs. ExPASy TrEMBL
Match: A0A1S3AW57 (snakin-2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483303 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.9e-37
Identity = 81/126 (64.29%), Postives = 92/126 (73.02%), Query Frame = 0


Query: 1   MAVR---FLLLLPLFFFHCLS--------QVSSDGYLAEREAMTK---DDGEAVRGPNKR 60
           MAVR    LLLL +F F CLS        Q+SSDGY  +   M +   D+ + +RG N+R
Sbjct: 1   MAVRKFLLLLLLGVFVFLCLSQLRRTHITQISSDGYQDQEAGMKEMEYDEDQVMRGANRR 60

Query: 61  MMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHA 113
           +M  IDCG ECKRRCGAHSRPNRC+RACGTCC RC CVPPGTSGNREMCGTCYT+MTTH 
Sbjct: 61  LMQYIDCGGECKRRCGAHSRPNRCIRACGTCCRRCRCVPPGTSGNREMCGTCYTSMTTHG 120

[Close]

BLAST of Sed0003696 vs. ExPASy TrEMBL
Match: A0A6J1JZU9 (snakin-2-like OS=Cucurbita maxima OX=3661 GN=LOC111490323 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.4e-35
Identity = 78/117 (66.67%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 1   MAVRFLLLLPLFFFHCLSQVS-----SDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGW 60
           MA RFLLLL +  F CLS  S     S G+           G  VR PN+R+M  IDCGW
Sbjct: 1   MAARFLLLLGVLAFLCLSPASFLHGGSVGF-DGNPGGGGGGGGTVRRPNERVMTKIDCGW 60

Query: 61  ECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP 113
           ECKRRCGAHSRPNRCLR CGTCC RC+CVPPGTSGNREMCGTCYT MTTH NK KCP
Sbjct: 61  ECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP 116

[Close]

BLAST of Sed0003696 vs. ExPASy TrEMBL
Match: A0A1S3UPU0 (snakin-2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767668 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 73/112 (65.18%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MAVRFLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRR 60
           MA+R LLLL +    C+++VSSD    + E    DD   VR  N+R+M  IDCG  CKRR
Sbjct: 1   MALRELLLLGILLLVCVAKVSSDVNTEKEELGFPDDPLTVRDGNRRVMQEIDCGGLCKRR 60

Query: 61  CGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP 113
           CGAHSRPN C RACGTCC RC CVPPGTSGNRE+CGTCYT MTTHANK KCP
Sbjct: 61  CGAHSRPNLCNRACGTCCVRCKCVPPGTSGNRELCGTCYTDMTTHANKTKCP 112

[Close]

BLAST of Sed0003696 vs. TAIR 10
Match: AT4G09600.1 (GAST1 protein homolog 3 )

HSP 1 Score: 94.0 bits (232), Expect = 8.3e-20
Identity = 50/112 (44.64%), Postives = 63/112 (56.25%), Query Frame = 0


Query: 1   MAVRFLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRR 60
           MA+    L+ L    CL+      + AE   +    GE V        V IDCG  CK R
Sbjct: 1   MAIFRSTLVLLLILFCLTTFELHVHAAEDSQV----GEGV--------VKIDCGGRCKGR 60

Query: 61  CGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP 113
           C   SRPN CLRAC +CC+RC+CVPPGT+GN  +C  CY ++TT   +LKCP
Sbjct: 61  CSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKCP 99

[Close]

BLAST of Sed0003696 vs. TAIR 10
Match: AT5G14920.1 (Gibberellin-regulated family protein )

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-19
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 51  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLK 110
           IDC   C  RCG HSR N C+RAC TCC+RC CVPPGT GN+E CG+CY  M T   K K
Sbjct: 214 IDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSK 273

Query: 111 CP 113
           CP
Sbjct: 274 CP 275

[Close]

BLAST of Sed0003696 vs. TAIR 10
Match: AT4G09610.1 (GAST1 protein homolog 2 )

HSP 1 Score: 91.7 bits (226), Expect = 4.1e-19
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 48  MVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHAN 107
           +V IDCG  CK RC   SR   CLRAC +CC RC+CVPPGTSGN  +C  CY ++TTH  
Sbjct: 36  VVKIDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGG 95

Query: 108 KLKCP 113
           +LKCP
Sbjct: 96  RLKCP 99

[Close]

BLAST of Sed0003696 vs. TAIR 10
Match: AT2G18420.1 (Gibberellin-regulated family protein )

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-17
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 51  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLK 110
           IDC   C+ RC   SRPN C RACGTCC RC+CV PGTSGN + C  CY ++TTH  + K
Sbjct: 34  IDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKC-PCYGSLTTHGGRRK 93

Query: 111 CP 113
           CP
Sbjct: 94  CP 94

[Close]

BLAST of Sed0003696 vs. TAIR 10
Match: AT1G75750.1 (GAST1 protein homolog 1 )

HSP 1 Score: 84.7 bits (208), Expect = 5.1e-17
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 51  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLK 110
           IDCG  C  RC    RP  C RACGTCC+RC+CVPPGT GN + C  CY ++TTH  + K
Sbjct: 38  IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRK 97

Query: 111 CP 113
           CP
Sbjct: 98  CP 98

The following BLAST results are available for this feature:

BLAST of Sed0003696 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438104.1	1.3e-38	68.64	PREDICTED: snakin-2-like isoform X2 [Cucumis melo]	[more]
XP_038895055.1	6.4e-38	70.43	snakin-2-like [Benincasa hispida]	[more]
KGN64291.1	7.0e-37	67.83	hypothetical protein Csa_013222 [Cucumis sativus]	[more]
XP_023542413.1	2.0e-36	68.14	snakin-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_008438094.1	2.0e-36	64.29	PREDICTED: snakin-2-like isoform X1 [Cucumis melo]	[more]

BLAST of Sed0003696 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46687	1.2e-18	44.64	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV...	[more]
Q93X17	2.6e-18	66.13	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
Q9LFR3	3.4e-18	62.90	Gibberellin-regulated protein 14 OS=Arabidopsis thaliana OX=3702 GN=GASA14 PE=1 ...	[more]
P46688	5.8e-18	60.00	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]
F4IQJ4	3.2e-16	59.68	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]

BLAST of Sed0003696 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AVJ9	6.2e-39	68.64	snakin-2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483303 PE=3 SV=1	[more]
A0A0A0LW79	3.4e-37	67.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045890 PE=3 SV=1	[more]
A0A1S3AW57	9.9e-37	64.29	snakin-2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483303 PE=3 SV=1	[more]
A0A6J1JZU9	2.4e-35	66.67	snakin-2-like OS=Cucurbita maxima OX=3661 GN=LOC111490323 PE=3 SV=1	[more]
A0A1S3UPU0	1.3e-33	65.18	snakin-2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767668 PE=3 SV=1	[more]

BLAST of Sed0003696 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09600.1	8.3e-20	44.64	GAST1 protein homolog 3	[more]
AT5G14920.1	2.4e-19	62.90	Gibberellin-regulated family protein	[more]
AT4G09610.1	4.1e-19	60.00	GAST1 protein homolog 2	[more]
AT2G18420.1	2.3e-17	59.68	Gibberellin-regulated family protein	[more]
AT1G75750.1	5.1e-17	58.06	GAST1 protein homolog 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 52..112 e-value: 1.0E-19 score: 70.4
None	No IPR available	PANTHER	PTHR23201:SF18	GIBBERELLIN-REGULATED PROTEIN 2-RELATED	coord: 3..112
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 3..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003696.1	Sed0003696.1	mRNA