Sed0003411 (gene) Chayote v1

Overview
NameSed0003411
Typegene
OrganismSechium edule (Chayote v1)
DescriptionNACHT, LRR and PYD domains-containing protein 5 isoform X3
LocationLG07: 1614258 .. 1614536 (+)
RNA-Seq ExpressionSed0003411
SyntenySed0003411
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAAGCTCCTTCCCTGCTATTTCTATGCACAACCCTAATCAGAGATGAAATTGCTCAAAGTAATCGTCTCCATTGTTTTTTCTGTTACTTCTACTCTGTTCTTCCGTATTCGTTTCTTTGCTTTGATTTCTTAATGCGTTGCTCTTTTTCAGGGGATGACATTCCAGACGGTGTTTATGATCTTCCTCCTCACCTTTTGGATGTTCTGGCTTCGCAGCTGCCGCCGTTGGGTTTGCAGAATTTGCAGTCAGGAATGTATGTCGTCCCGCCCTGA

mRNA sequence

ATGGCGGAAGCTCCTTCCCTGCTATTTCTATGCACAACCCTAATCAGAGATGAAATTGCTCAAAGGGATGACATTCCAGACGGTGTTTATGATCTTCCTCCTCACCTTTTGGATGTTCTGGCTTCGCAGCTGCCGCCGTTGGGTTTGCAGAATTTGCAGTCAGGAATGTATGTCGTCCCGCCCTGA

Coding sequence (CDS)

ATGGCGGAAGCTCCTTCCCTGCTATTTCTATGCACAACCCTAATCAGAGATGAAATTGCTCAAAGGGATGACATTCCAGACGGTGTTTATGATCTTCCTCCTCACCTTTTGGATGTTCTGGCTTCGCAGCTGCCGCCGTTGGGTTTGCAGAATTTGCAGTCAGGAATGTATGTCGTCCCGCCCTGA

Protein sequence

MAEAPSLLFLCTTLIRDEIAQRDDIPDGVYDLPPHLLDVLASQLPPLGLQNLQSGMYVVPP
Homology
BLAST of Sed0003411 vs. NCBI nr
Match: XP_022954282.1 (uncharacterized protein LOC111456584 isoform X1 [Cucurbita moschata] >XP_022954283.1 uncharacterized protein LOC111456584 isoform X1 [Cucurbita moschata])

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 0

Query: 1  MAEAPSLLFLCTTLIRDEIAQRDDIPDGVYDLPPHLLDVLASQLPPLGLQNLQSGM 57
          MAEAPSLLFLCT L+RDEI +RDD+P  VYDLPP LLD LASQLPPL LQNLQSGM
Sbjct: 1  MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDALASQLPPLALQNLQSGM 56

BLAST of Sed0003411 vs. NCBI nr
Match: KAG7014586.1 (T-complex-associated testis-expressed protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 0

Query: 1    MAEAPSLLFLCTTLIRDEIAQRDDIPDGVYDLPPHLLDVLASQLPPLGLQNLQSGM 57
            MAEAPSLLFLCT L+RDEI +RDD+P  VYDLPP LLD LASQLPPL LQNLQSGM
Sbjct: 1083 MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDALASQLPPLALQNLQSGM 1138

BLAST of Sed0003411 vs. NCBI nr
Match: KAG6576068.1 (CLIP-associated protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 0

Query: 1    MAEAPSLLFLCTTLIRDEIAQRDDIPDGVYDLPPHLLDVLASQLPPLGLQNLQSGM 57
            MAEAPSLLFLCT L+RDEI +RDD+P  VYDLPP LLD LASQLPPL LQNLQSGM
Sbjct: 1115 MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDALASQLPPLALQNLQSGM 1170

BLAST of Sed0003411 vs. NCBI nr
Match: XP_023549040.1 (uncharacterized protein LOC111807525 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549041.1 uncharacterized protein LOC111807525 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 0

Query: 1  MAEAPSLLFLCTTLIRDEIAQRDDIPDGVYDLPPHLLDVLASQLPPLGLQNLQSGM 57
          MAEAPSLLFLCT L+RDEI +RDD+P  VYDLPP LLD LASQLPPL LQNLQSGM
Sbjct: 1  MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDTLASQLPPLALQNLQSGM 56

BLAST of Sed0003411 vs. NCBI nr
Match: KAA0050632.1 (NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis melo var. makuwa] >TYK07801.1 NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 7.5e-17
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 1  MAEAPSLLFLCTTLIRDEIAQRDDIPDGVYDLPPHLLDVLASQLPPLGLQNLQSGMYVVP 60
          MAEAPSLL LC  LI DEI QRDD+P  +YDLPP LLD LA QLPPL L NLQSGMYV+P
Sbjct: 1  MAEAPSLLSLCIALITDEIVQRDDVPPSLYDLPPDLLDTLALQLPPLALHNLQSGMYVLP 60

Query: 61 P 62
          P
Sbjct: 61 P 61

BLAST of Sed0003411 vs. ExPASy TrEMBL
Match: A0A0A0K6N3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G330380 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-18
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 1  MAEAPSLLFLCTTLIRDEIAQRDDIPDGVYDLPPHLLDVLASQLPPLGLQNLQSGMYVVP 60
          MAEAPSLL LC  L+RDEI QRDD+P  +YDLPPHLLD LA +LPPL L+NLQSGMYV P
Sbjct: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMYVFP 60

Query: 61 P 62
          P
Sbjct: 61 P 61

BLAST of Sed0003411 vs. ExPASy TrEMBL
Match: A0A6J1GQL7 (uncharacterized protein LOC111456584 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456584 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 0

Query: 1  MAEAPSLLFLCTTLIRDEIAQRDDIPDGVYDLPPHLLDVLASQLPPLGLQNLQSGM 57
          MAEAPSLLFLCT L+RDEI +RDD+P  VYDLPP LLD LASQLPPL LQNLQSGM
Sbjct: 1  MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDALASQLPPLALQNLQSGM 56

BLAST of Sed0003411 vs. ExPASy TrEMBL
Match: A0A5D3C7E3 (NACHT, LRR and PYD domains-containing protein 5 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00940 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.6e-17
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 1  MAEAPSLLFLCTTLIRDEIAQRDDIPDGVYDLPPHLLDVLASQLPPLGLQNLQSGMYVVP 60
          MAEAPSLL LC  LI DEI QRDD+P  +YDLPP LLD LA QLPPL L NLQSGMYV+P
Sbjct: 1  MAEAPSLLSLCIALITDEIVQRDDVPPSLYDLPPDLLDTLALQLPPLALHNLQSGMYVLP 60

Query: 61 P 62
          P
Sbjct: 61 P 61

BLAST of Sed0003411 vs. ExPASy TrEMBL
Match: A0A6J1JTJ2 (uncharacterized protein LOC111488203 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488203 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.0e-16
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0

Query: 1  MAEAPSLLFLCTTLIRDEIAQRDDIPDGVYDLPPHLLDVLASQLPPLGLQNLQSGM 57
          MAEAPSLL LCT L+RDEI +RDD+P  VY+LPP LLD LASQLPPL L+NLQSGM
Sbjct: 1  MAEAPSLLSLCTALVRDEIVRRDDVPPAVYNLPPDLLDALASQLPPLALENLQSGM 56

BLAST of Sed0003411 vs. ExPASy TrEMBL
Match: A0A1S3CFT7 (uncharacterized protein LOC103500467 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500467 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.8e-14
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1  MAEAPSLLFLCTTLIRDEIAQRDDIPDGVYDLPPHLLDVLASQLPPLGLQNLQSGM 57
          MAEAPSLL LC  L+ DEI QRDD+P  +YDLPP LLD LA QLPPL L NLQSGM
Sbjct: 1  MAEAPSLLSLCIALVTDEIVQRDDVPPALYDLPPDLLDTLALQLPPLALHNLQSGM 56

BLAST of Sed0003411 vs. TAIR 10
Match: AT2G20210.1 (RNI-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 2.9e-06
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 1  MAEAPSLLFLCTTLIRDEIAQRDD-IPDGVYDLPPHLLDVLASQLPPLGLQNLQSGM 57
          M +APSL FLC   ++ ++ + D+ IPD +Y+LP  LLD + + LP L LQ  Q+ M
Sbjct: 1  MTKAPSLAFLCIQSLKIQLLESDNPIPD-LYELPSELLDGIVAHLPALALQKFQTNM 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022954282.12.6e-1782.14uncharacterized protein LOC111456584 isoform X1 [Cucurbita moschata] >XP_0229542... [more]
KAG7014586.12.6e-1782.14T-complex-associated testis-expressed protein 1 [Cucurbita argyrosperma subsp. a... [more]
KAG6576068.12.6e-1782.14CLIP-associated protein, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023549040.12.6e-1782.14uncharacterized protein LOC111807525 isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
KAA0050632.17.5e-1775.41NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis melo var. ma... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6N34.3e-1875.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G330380 PE=4 SV=1[more]
A0A6J1GQL71.3e-1782.14uncharacterized protein LOC111456584 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A5D3C7E33.6e-1775.41NACHT, LRR and PYD domains-containing protein 5 isoform X3 OS=Cucumis melo var. ... [more]
A0A6J1JTJ29.0e-1676.79uncharacterized protein LOC111488203 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A1S3CFT73.8e-1473.21uncharacterized protein LOC103500467 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
AT2G20210.12.9e-0643.86RNI-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0003411.1Sed0003411.1mRNA