Sed0003312 (gene) Chayote v1

Overview


Name	Sed0003312
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L35-like
Location	LG03: 336714 .. 338972 (-)
RNA-Seq Expression	Sed0003312
Synteny	Sed0003312

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACAATCCTTTTCCCGCTCAGGGAAACCCTAGTTTTCACAGTAGCACTTCTTCCACCAGGTTCCAAGGGTTTCGCCAAGGGCGGCGCTGAGTCGAAGAGCACGCGCCAAGAAATGGGTAAATTCTGAATCAAATCTTATAATCAACGAATTGAATCGTTATCGATTCAGTATTCAGCTCCATAGTTTGTAAATGGAAACGATTCTACATTTTTGTTATCCAATTTGATGTTTTGGATTGTAGCGAGGATTAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCGGATCTGTTGACGCAGCTTAAGGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTCGCTAAAGTCACCGGCGGTGCCCCAAACAAGCTATCCAAAATGTAATTACATTTTTGTTTTGCTCAATGGATTTCATTTTGTTGTTGAACCTGCTTGTTGTTCATTGTGGTTGATTTTGCAGCAAGGTGGTGAAATTGTCGATCGCTCGAGTGTTGACGGTAATTTCTCAGAAGCAGAAGGCCGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTCGATCTACGACCAAAGAAGACCAGAGCCATTCGTAGAAGGCTCACCAAGCATCAGGTAACTTCTTTGCCTTTGTCTTTTTTGTTTCCTTTAAGTCACTAGTGCACCACTTATTGATCAGATTTCTCCGTATAAGAATAATTCAACACTAGTTGTAGTCGTTGGCAGTTTGTTTTTTCTTGGTTTGTTTTGATGAGGGAAAGTATGGCATGCTTGATTTTTTTAGTTTTACACACAACATATATGGTTTAAGTTGGTATTTGAAGTATATTCTTAGATTTCTGTTTTATTTCTTTGATTTTAACTAACTAATATAATGGGGAGAATTACATTTGGGTAACTCAAGTTTAATAATATCAAAGGGTTTGTTGGTAGCTAATTAGCCAATCACACACCGGCTGAATAGCTGTCTGTTCTGTGTGAATGGTCAGTAAGCTCACCTATATTAACGTTGTTTGACAGCCGTTGCAGTGAAGTTAGATCGTGTAGTTTCACTCCAAGGCTGTTAAAGTACATGTATTATACCTTGTTGAAGTAATATCAATGCGTTTGAAAGACCCCTTCTTATATGGGAAACTTTTAGCCTTCAAGTAATGTGCTACTTAGTTTTTATTCTCTGGTTATCCTCTAATGCATGATTTTTACCCTAGTGGGTGGAACTTGAAACTGGGAGATTCATGAAAAAAAAAACTGGAGTTCAGTAGTAGGGGTGGCCTTGTTGGTAGAGGGTTGAGGTCGTGAAACTATTTTCCCATGGACGTTTCTCGAGTTTAGGTATTAGGATGGGTGCATGTGCACATGTGTATGATGTAGTGAGCAAAGTTATGTCTGTTGGTTATAAAAGACATTCGGAGTGTTGAATTCGAATTTATGATCTTTGGTTACAAGTCCATACTTTTTGCTGGCTTTCTCATTCCTCTATAAATTACTTTTATTGCTTCTGGAATGCTCCTTCCCATTTTGTTGAGTAAATCTATCTTCTCATGCAGGCATCTTTGTTAACTGAGAGACAGAAGAAGAAAGAGATGTACTATCCATTGAGGAAATATGCGATTAAGGTGTAGTAGTATTTTTTGGTCATTTTATATGCAACGGTAGACCAATTTTGTTGACAAGTTTTGTTTCGCGATCTCGATAATTTTATGTTGATACACTTGAGGTTTTATCCCTTTAGCCAAGAAGTTCTATTTTCATCGACAATCATATATTTTCATCCTTTAGCTCTGTTTCCACCCACCATGCAATTTATAGTTTGATTGATTCAGTTTTGGTGCCTGAGATAGTGATCAACTTTTCAACTTTTGGAACAAAGAACTAATAACAACTGACATTAGCTTCGACAACTTCAACAAAGTTGAAAGCAGGAAATAACTTTAAGATCGGTATATTCACTTTTGTCTTATTCATAACTACTAAACACAGGTATTGAATATTGAAATGTGATAACTAACATAACGTTGTGATTATCATGTTTAGTATTATTAAGGGTTATGATAATATCCTTCCTATTTTAACACACCACACTTTACACTTTACACTGCTCTCTATCGGATCTAAATGTTTTGTGAAATTCTATTTGCAGTTTAGCAGTTAGTATTAGTTGAAACTAACAATTGTTTTGGTATGCGTGTGAATAATTTTTTTATTATTTTTAAGAAAAATATCTATTTGGCCTTTGGGATATAGTTTCAATCCAACCC

mRNA sequence

AGACAATCCTTTTCCCGCTCAGGGAAACCCTAGTTTTCACAGTAGCACTTCTTCCACCAGGTTCCAAGGGTTTCGCCAAGGGCGGCGCTGAGTCGAAGAGCACGCGCCAAGAAATGGCGAGGATTAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCGGATCTGTTGACGCAGCTTAAGGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTCGCTAAAGTCACCGGCGGTGCCCCAAACAAGCTATCCAAAATCAAGGTGGTGAAATTGTCGATCGCTCGAGTGTTGACGGTAATTTCTCAGAAGCAGAAGGCCGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTCGATCTACGACCAAAGAAGACCAGAGCCATTCGTAGAAGGCTCACCAAGCATCAGGCATCTTTGTTAACTGAGAGACAGAAGAAGAAAGAGATGTACTATCCATTGAGGAAATATGCGATTAAGGTGTAGTAGTATTTTTTGGTCATTTTATATGCAACGGTAGACCAATTTTGTTGACAAGTTTTGTTTCGCGATCTCGATAATTTTATGTTGATACACTTGAGGTTTTATCCCTTTAGCCAAGAAGTTCTATTTTCATCGACAATCATATATTTTCATCCTTTAGCTCTGTTTCCACCCACCATGCAATTTATAGTTTGATTGATTCAGTTTTGGTGCCTGAGATAGTGATCAACTTTTCAACTTTTGGAACAAAGAACTAATAACAACTGACATTAGCTTCGACAACTTCAACAAAGTTGAAAGCAGGAAATAACTTTAAGATCGGTATATTCACTTTTGTCTTATTCATAACTACTAAACACAGGTATTGAATATTGAAATGTGATAACTAACATAACGTTGTGATTATCATGTTTAGTATTATTAAGGGTTATGATAATATCCTTCCTATTTTAACACACCACACTTTACACTTTACACTGCTCTCTATCGGATCTAAATGTTTTGTGAAATTCTATTTGCAGTTTAGCAGTTAGTATTAGTTGAAACTAACAATTGTTTTGGTATGCGTGTGAATAATTTTTTTATTATTTTTAAGAAAAATATCTATTTGGCCTTTGGGATATAGTTTCAATCCAACCC

Coding sequence (CDS)

ATGGCGAGGATTAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCGGATCTGTTGACGCAGCTTAAGGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTCGCTAAAGTCACCGGCGGTGCCCCAAACAAGCTATCCAAAATCAAGGTGGTGAAATTGTCGATCGCTCGAGTGTTGACGGTAATTTCTCAGAAGCAGAAGGCCGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTCGATCTACGACCAAAGAAGACCAGAGCCATTCGTAGAAGGCTCACCAAGCATCAGGCATCTTTGTTAACTGAGAGACAGAAGAAGAAAGAGATGTACTATCCATTGAGGAAATATGCGATTAAGGTGTAG

Protein sequence

MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYAIKV

Homology

[Close]

BLAST of Sed0003312 vs. NCBI nr
Match: XP_022941613.1 (60S ribosomal protein L35-like [Cucurbita moschata] >XP_023525303.1 60S ribosomal protein L35-like [Cucurbita pepo subsp. pepo] >KAG6600078.1 60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030747.1 60S ribosomal protein L35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.5 bits (545), Expect = 5.0e-52
Identity = 120/123 (97.56%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVV+LSIA+VLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. NCBI nr
Match: KAG6602348.1 (Dirigent protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214.5 bits (545), Expect = 5.0e-52
Identity = 120/123 (97.56%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+LSIA+VLTV
Sbjct: 331 MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 390

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL+TERQKKKEMYYPLRKYA
Sbjct: 391 ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 450

Query: 121 IKV 124
           IKV
Sbjct: 451 IKV 453

[Close]

BLAST of Sed0003312 vs. NCBI nr
Match: XP_022923169.1 (60S ribosomal protein L35-like [Cucurbita moschata] >KAG7033027.1 60S ribosomal protein L35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.5 bits (545), Expect = 5.0e-52
Identity = 120/123 (97.56%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+LSIA+VLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL+TERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. NCBI nr
Match: XP_022992073.1 (60S ribosomal protein L35-like [Cucurbita maxima])

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 120/123 (97.56%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELRQKSKADLL QLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+LSIA+VLTV
Sbjct: 1   MARIKVHELRQKSKADLLIQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. NCBI nr
Match: XP_022990488.1 (60S ribosomal protein L35-like [Cucurbita maxima])

HSP 1 Score: 212.6 bits (540), Expect = 1.9e-51
Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELR KSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+LSIA+VLTV
Sbjct: 1   MARIKVHELRHKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL+TERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. ExPASy Swiss-Prot
Match: Q9M5L0 (60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-49
Identity = 109/123 (88.62%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELRQK+KA+LL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVV+LSIA+VLTV
Sbjct: 1   MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ SL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. ExPASy Swiss-Prot
Match: O80626 (60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 9.1e-49
Identity = 108/123 (87.80%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELR+KSKADL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVV+ SIA+VLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. ExPASy Swiss-Prot
Match: Q9SF53 (60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.0e-48
Identity = 107/123 (86.99%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELR+KSK+DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVV+ SIA+VLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. ExPASy Swiss-Prot
Match: Q9LZ41 (60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.5e-48
Identity = 107/123 (86.99%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVV+ SIA+VLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. ExPASy Swiss-Prot
Match: Q9M3D2 (60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.0e-47
Identity = 106/123 (86.18%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVV+ SIA+VLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. ExPASy TrEMBL
Match: A0A6J1FSL2 (60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111446919 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.4e-52
Identity = 120/123 (97.56%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVV+LSIA+VLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. ExPASy TrEMBL
Match: A0A6J1E5L3 (60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111430917 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.4e-52
Identity = 120/123 (97.56%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+LSIA+VLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL+TERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. ExPASy TrEMBL
Match: A0A6J1JY13 (60S ribosomal protein L35-like OS=Cucurbita maxima OX=3661 GN=LOC111488528 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.4e-52
Identity = 120/123 (97.56%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELRQKSKADLL QLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+LSIA+VLTV
Sbjct: 1   MARIKVHELRQKSKADLLIQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. ExPASy TrEMBL
Match: A0A6J1JTF2 (60S ribosomal protein L35-like OS=Cucurbita maxima OX=3661 GN=LOC111487336 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.2e-52
Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELR KSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+LSIA+VLTV
Sbjct: 1   MARIKVHELRHKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL+TERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. ExPASy TrEMBL
Match: A0A6J1JVN4 (60S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111488270 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51
Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+LSIA+VLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. TAIR 10
Match: AT2G39390.1 (Ribosomal L29 family protein )

HSP 1 Score: 194.1 bits (492), Expect = 6.5e-50
Identity = 108/123 (87.80%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELR+KSKADL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVV+ SIA+VLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. TAIR 10
Match: AT3G09500.1 (Ribosomal L29 family protein )

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-49
Identity = 107/123 (86.99%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELR+KSK+DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVV+ SIA+VLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. TAIR 10
Match: AT5G02610.1 (Ribosomal L29 family protein )

HSP 1 Score: 192.2 bits (487), Expect = 2.5e-49
Identity = 107/123 (86.99%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVV+ SIA+VLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. TAIR 10
Match: AT3G55170.1 (Ribosomal L29 family protein )

HSP 1 Score: 190.7 bits (483), Expect = 7.2e-49
Identity = 106/123 (86.18%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVV+ SIA+VLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Sed0003312 vs. TAIR 10
Match: AT3G55170.2 (Ribosomal L29 family protein )

HSP 1 Score: 190.7 bits (483), Expect = 7.2e-49
Identity = 106/123 (86.18%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKLSIARVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVV+ SIA+VLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLLTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

The following BLAST results are available for this feature:

BLAST of Sed0003312 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941613.1	5.0e-52	97.56	60S ribosomal protein L35-like [Cucurbita moschata] >XP_023525303.1 60S ribosoma...	[more]
KAG6602348.1	5.0e-52	97.56	Dirigent protein 25, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022923169.1	5.0e-52	97.56	60S ribosomal protein L35-like [Cucurbita moschata] >KAG7033027.1 60S ribosomal ...	[more]
XP_022992073.1	1.1e-51	97.56	60S ribosomal protein L35-like [Cucurbita maxima]	[more]
XP_022990488.1	1.9e-51	96.75	60S ribosomal protein L35-like [Cucurbita maxima]	[more]

BLAST of Sed0003312 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5L0	1.4e-49	88.62	60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1	[more]
O80626	9.1e-49	87.80	60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1	[more]
Q9SF53	2.0e-48	86.99	60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1	[more]
Q9LZ41	3.5e-48	86.99	60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1	[more]
Q9M3D2	1.0e-47	86.18	60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1	[more]

BLAST of Sed0003312 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FSL2	2.4e-52	97.56	60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111446919 PE=...	[more]
A0A6J1E5L3	2.4e-52	97.56	60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111430917 PE=...	[more]
A0A6J1JY13	5.4e-52	97.56	60S ribosomal protein L35-like OS=Cucurbita maxima OX=3661 GN=LOC111488528 PE=3 ...	[more]
A0A6J1JTF2	9.2e-52	96.75	60S ribosomal protein L35-like OS=Cucurbita maxima OX=3661 GN=LOC111487336 PE=3 ...	[more]
A0A6J1JVN4	1.2e-51	96.75	60S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111488270 PE=3 SV=1	[more]

BLAST of Sed0003312 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39390.1	6.5e-50	87.80	Ribosomal L29 family protein	[more]
AT3G09500.1	1.4e-49	86.99	Ribosomal L29 family protein	[more]
AT5G02610.1	2.5e-49	86.99	Ribosomal L29 family protein	[more]
AT3G55170.1	7.2e-49	86.18	Ribosomal L29 family protein	[more]
AT3G55170.2	7.2e-49	86.18	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34
None	No IPR available	GENE3D	6.10.250.3450		coord: 78..123 e-value: 2.4E-21 score: 77.7
None	No IPR available	PANTHER	PTHR45722:SF18	60S RIBOSOMAL PROTEIN L35-LIKE	coord: 1..123
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 8..64 e-value: 3.06683E-11 score: 52.8751
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 8..64 e-value: 5.0E-18 score: 62.9
IPR001854	Ribosomal protein L29/L35	PFAM	PF00831	Ribosomal_L29	coord: 8..64 e-value: 6.7E-18 score: 64.4
IPR001854	Ribosomal protein L29/L35	HAMAP	MF_00374	Ribosomal_L29	coord: 4..64 score: 12.911724
IPR036049	Ribosomal protein L29/L35 superfamily	GENE3D	1.10.287.310		coord: 1..77 e-value: 5.4E-36 score: 124.8
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 4..65
IPR045059	60S ribosomal protein L35	PANTHER	PTHR45722	60S RIBOSOMAL PROTEIN L35	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003312.1	Sed0003312.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome