Sed0003256 (gene) Chayote v1

Overview


Name	Sed0003256
Type	gene
Organism	Sechium edule (Chayote v1)
Description	glycine-rich cell wall structural protein 1.8-like
Location	LG04: 7160620 .. 7161505 (-)
RNA-Seq Expression	Sed0003256
Synteny	Sed0003256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATCCAAAGAGTTCTGTGCCTCGGCCTTCTTCTCCTTGTGAGTTTAGGCTTAGCTTCCGCAGCTAGAAGCCTTCTAGTTTATGATCCTCCTGCACGCCACAATGAGTATGATCGCCCCAACCCAAGAGGAGAGTTCGATCACGACCATCATGACGAATCCAACGACAACGTATACGGTGGAAGTGCTGGTAGAGGATATGGAGTGAGTGGCTCTGCTCTCGGAAGCTCGGGATACGGTAGTGGTGGAAGTGCTGGATATGGAGGAAGCCAAGGTGGACGTGGAGATGGTTATGGTAAAGACGGGCGTGGAGGATATGGAAGCGGAGGAGACCGGGCGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAGCGGAGGAGACCGGGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGAGGAGACCGTGGTGTAGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGCGGCGGAGACCGCGGTGTCGGCTATGATAATAGAGGGAGTGTTGGATATGGAAGGCGGAGGAGACGCGGTGTAGGCTATGACAATAGAGGGAGTGTTGGATATGGAAATGGAGGAAGCGGAGGCTATGGAAGTGAAAAGGGAATGGATACGGCCAAAGAGGAGACCATGGAGTAGGATATGATAGTAGAGGAAGTGTTGGGTCTGGAAGTGATTATGGAAATTCTCGAGGATATGGCAATGGAAATGGACAAGCTGGTGGTGCCTATGGCAATGGAAATGGCTCAGCTGGAACTGCTTATGGCAGTAGTGGAAGTGCTCATGGAGGAGAACATGACAATAACAAAGGAAGTGGAGAGGAAGGAGGTTCTGATGGTGGATACTAAAAACCCTTTTAAGTAA

mRNA sequence

ATGGCTATCCAAAGAGTTCTGTGCCTCGGCCTTCTTCTCCTTGTGAGTTTAGGCTTAGCTTCCGCAGCTAGAAGCCTTCTAGTTTATGATCCTCCTGCACGCCACAATGAGTATGATCGCCCCAACCCAAGAGGAGAGTTCGATCACGACCATCATGACGAATCCAACGACAACGTATACGGTGGAAGTGCTGGTAGAGGATATGGAGTGAGTGGCTCTGCTCTCGGAATGCTCATGGAGGAGAACATGACAATAACAAAGGAAGTGGAGAGGAAGGAGGTTCTGATGGTGGATACTAAAAACCCTTTTAAGTAA

Coding sequence (CDS)

ATGGCTATCCAAAGAGTTCTGTGCCTCGGCCTTCTTCTCCTTGTGAGTTTAGGCTTAGCTTCCGCAGCTAGAAGCCTTCTAGTTTATGATCCTCCTGCACGCCACAATGAGTATGATCGCCCCAACCCAAGAGGAGAGTTCGATCACGACCATCATGACGAATCCAACGACAACGTATACGGTGGAAGTGCTGGTAGAGGATATGGAGTGAGTGGCTCTGCTCTCGGAATGCTCATGGAGGAGAACATGACAATAACAAAGGAAGTGGAGAGGAAGGAGGTTCTGATGGTGGATACTAAAAACCCTTTTAAGTAA

Protein sequence

MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVYGGSAGRGYGVSGSALGMLMEENMTITKEVERKEVLMVDTKNPFK

Homology

[Close]

BLAST of Sed0003256 vs. NCBI nr
Match: KAG6577709.1 (hypothetical protein SDJN03_25283, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 55/76 (72.37%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 1  MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
          MAI RVLCL  LLLV LGLASAAR+LL YDP  RH  YDRPNPR  +D  H DES DNVY
Sbjct: 1  MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNVY 60

Query: 61 GGSAGRGYGVSGSALG 77
          GG +G GYGV GSALG
Sbjct: 61 GGRSGGGYGVGGSALG 76

[Close]

BLAST of Sed0003256 vs. NCBI nr
Match: KAG6577708.1 (hypothetical protein SDJN03_25282, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 55/76 (72.37%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 1  MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
          MAI RVLCL  LLLV LGLASAAR+LL YDP  RH  YDRPNPR  +D  H DES DNVY
Sbjct: 1  MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNVY 60

Query: 61 GGSAGRGYGVSGSALG 77
          GG +G GYGV GSALG
Sbjct: 61 GGRSGGGYGVGGSALG 76

[Close]

BLAST of Sed0003256 vs. NCBI nr
Match: KAG6577710.1 (hypothetical protein SDJN03_25284, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-17
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 1  MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
          MAI RVLCL  LLLV LGLASA+R+LL YDP  RH  YDRPNPR  +D  H DES DNVY
Sbjct: 1  MAITRVLCLSFLLLVGLGLASASRTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNVY 60

Query: 61 GGSAGRGYGVSGSALG 77
          GG +G GYGV GSALG
Sbjct: 61 GGRSGGGYGVGGSALG 76

[Close]

BLAST of Sed0003256 vs. NCBI nr
Match: XP_023552983.1 (glycine-rich cell wall structural protein 1.8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-17
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
          MAI RVLCL  LLLV  GLASAAR+LL YDP  RH  YDRPNPR  +D  H DES DNVY
Sbjct: 1  MAITRVLCLSFLLLVGFGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNVY 60

Query: 61 GGSAGRGYGVSGSALG 77
          GG +G GYGV GSALG
Sbjct: 61 GGRSGGGYGVGGSALG 76

[Close]

BLAST of Sed0003256 vs. NCBI nr
Match: XP_023552980.1 (glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.8 bits (242), Expect = 5.8e-17
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
          MAI RVLCL  LLLV LGLASAAR+LL YDP   H  YDRPNPR  +D  H DES DNVY
Sbjct: 1  MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTHHYGYDRPNPREGYDSGHRDESYDNVY 60

Query: 61 GGSAGRGYGVSGSALG 77
          GG +G GYGV GSALG
Sbjct: 61 GGRSGGGYGVGGSALG 76

[Close]

BLAST of Sed0003256 vs. ExPASy TrEMBL
Match: A0A0A0L190 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G010050 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.2e-17
Identity = 58/98 (59.18%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 1  MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
          MAI RVLC+G LL V LGLASA R+LL YDP AR  +YDRP PR  +D  H D+S DNVY
Sbjct: 1  MAISRVLCIGFLLFVGLGLASATRTLLDYDPRARRYDYDRPTPRVGYDPSHRDQSYDNVY 60

Query: 61 GGSAGRGYGVSGSALGMLMEENMTITKEVERKEVLMVD 99
          GGS+ RGYG   SALG          KEVE+K V  VD
Sbjct: 61 GGSSSRGYGAGDSALG---------AKEVEKKGVGTVD 89

[Close]

BLAST of Sed0003256 vs. ExPASy TrEMBL
Match: A0A6J1HQH3 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 GN=LOC111465170 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-16
Identity = 52/76 (68.42%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1  MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
          MAI RVLCL  LLL+ LGLASAAR+LL YDP  RH  YDRPNPR  +D  H DES DN Y
Sbjct: 1  MAITRVLCLTFLLLIGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61 GGSAGRGYGVSGSALG 77
          GG +G  YGV GSALG
Sbjct: 61 GGRSGGEYGVGGSALG 76

[Close]

BLAST of Sed0003256 vs. ExPASy TrEMBL
Match: A0A6J1L118 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 GN=LOC111500189 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-16
Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1  MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
          MAI RVLCL  LLLV LGLASAAR+LL YDP  RH  YDRPNPR  +D  H DES DN Y
Sbjct: 1  MAITRVLCLTFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61 GGSAGRGYGVSGSALG 77
          GG +G  YGV GSALG
Sbjct: 61 GGRSGGEYGVRGSALG 76

[Close]

BLAST of Sed0003256 vs. ExPASy TrEMBL
Match: A0A6J1E6E4 (glycine-rich protein DOT1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431202 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.9e-16
Identity = 52/76 (68.42%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1  MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
          MAI RVLCL  LLLV LGLASAAR+LL YDP  RH  YDRPNPR  +D  H DES DN Y
Sbjct: 1  MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61 GGSAGRGYGVSGSALG 77
          GG +G GYG   SALG
Sbjct: 61 GGRSGGGYGDGSSALG 76

[Close]

BLAST of Sed0003256 vs. ExPASy TrEMBL
Match: A0A6J1E5N6 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita moschata OX=3662 GN=LOC111430999 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.9e-16
Identity = 52/76 (68.42%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1  MAIQRVLCLGLLLLVSLGLASAARSLLVYDPPARHNEYDRPNPRGEFDHDHHDESNDNVY 60
          MAI RVLCL  LLLV LGLASAAR+LL YDP  RH  YDRPNPR  +D  H DES DN Y
Sbjct: 1  MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61 GGSAGRGYGVSGSALG 77
          GG +G GYG   SALG
Sbjct: 61 GGRSGGGYGDGSSALG 76

The following BLAST results are available for this feature:

BLAST of Sed0003256 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577709.1	1.5e-17	72.37	hypothetical protein SDJN03_25283, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6577708.1	1.5e-17	72.37	hypothetical protein SDJN03_25282, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6577710.1	3.4e-17	71.05	hypothetical protein SDJN03_25284, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023552983.1	4.4e-17	71.05	glycine-rich cell wall structural protein 1.8-like [Cucurbita pepo subsp. pepo]	[more]
XP_023552980.1	5.8e-17	71.05	glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0003256 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0003256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L190	6.2e-17	59.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G010050 PE=4 SV=1	[more]
A0A6J1HQH3	4.0e-16	68.42	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1L118	4.0e-16	69.74	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1E6E4	6.9e-16	68.42	glycine-rich protein DOT1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1E5N6	6.9e-16	68.42	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of Sed0003256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003256.1	Sed0003256.1	mRNA