Sed0003230 (gene) Chayote v1

Overview


Name	Sed0003230
Type	gene
Organism	Sechium edule (Chayote v1)
Description	BEST Arabidopsis thaliana protein match is: reduced male fertility .
Location	LG09: 5128258 .. 5133744 (-)
RNA-Seq Expression	Sed0003230
Synteny	Sed0003230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGAAACTGAGCATTTCCTCAGCGCGAGATCGAGTGGTGACGAGATCTCAATCCATTTCCATGGAGCGTGAGAATTCGTCGAAGCGATCGTCGTCGCAAACTCCAGTTGCTGCTGCAGAGCCGGAAGGAATGGTGAAGCGAATGCGAAGAGAAATCTTGCCGATTCATTCTTGCAGCTCTCCTCGTTCCGCTTTTCTCACTGCGCATTCCTCTGCATCTTCGTCTTCCTGCTGGTTCGTTCTCTTTCTCTTTCCGTTTTCATCTCGATCATCGCTGTTCGTAGGTAATTTCAGTGTTGAATGCAAGTTTCGCGCGTAAAATCGTGTTTGTGTGTAGAGATGAATGTAAATCTGTATTCTGATTGCGAGGAAGTTCGGATTGATTTTCTGTTAGTGATTTGAATTTCTCTGTTCGAGAATTGAGATGTGAAGTTATTTCATCGATTTTCGCCTCTCTGAGCTTGACTTTGTAGTTGAATTTGTATATTACTGAGTATTCTGATGGTGAGGAAGTTCGAATTTGATATTCTAGAACTGGCTTGAATTTCTCTGATCGGAAATTGAGACGTGAAGCTATTTCCTCGATTTTTAGCCTCTCTGAGCTTGACTTTGTCGTCGAATTTGTTGAGGAAGTTCGAATTTGATATTCTAGAACTGACTTGAATTTCTCTATTCGAAAATTGAGATGTGAAGTTATTTCCTCGATTTTAGCCTCTCTGAGCTTGACTTTATTGTCGAATTTGTTTAGTTCTGTGAAGGAATATGAAGTAGAAAGAAATGAATAATTCGAATTGTCTATCGCAGCATAAATTCATCTCGATGATCGCTGTTCGTAGGTAATTTTAGTGTTGATTCAAGTTTCGTGCGTAAAATCGTGTTTGCTTGTAGAGATGAATGCTTACCTGTTTTCCAACGTATTCTGATTGTGAGGACGTTCGAATTTGATTTTCTGGAAGTGATTTGAATTTCTCTGTTAAAAAAACGTTTAGTTATGTGATTTTAGGATTTGCTAATAGAATGGGATAGTCTTAATTTGATGAACACTTTCTATGGCTATTAAAAATTTGATCACAAGTACATTTTGTAATATAAATCGTACTGCCAATTTTTAAGTATAGATTTGAATTGTTTATTTGTCACAAGGATCGAAGCAGTTCCAGGATTCTTTCTATCTGAACTTAGTTTTGTATTAATTATTCCGAGTTCCCTAGTTTTCTTCATATTTTATTTTTCAATGTATTGGTATTTGGTTCAACTTTAAGTTTTCGAAAATGTGTAAATCAGTTATTGTTTCAGAAACCGAAAGCTCATTTGTTTGGTTTATCAGGATTAAGATTTATGGATCATAGAAATTATTAATTGTTCCTATCAATTTGAATTTCATTTGCAATAAGGCTTTAACCTTCTGTTTAACTTAATTTATGAACATGACAGGTATTACGCGGATGTGTGGACAGAGGTGGCGAAGTTTCTGGATGGAAGATCTTTGATGATGCTTGCGGCAACTAGCCGGTGGTTTTACCGCTTAGTCATGGAGGACAGTATATGGAAGTATGTTTGCCTCCGTGATCTTCAAGTCCCTGCTTCTCAACACACGTCCTTCAAATGGATCAAACTTTACGTTTCTGCCTTCGGTAAGAATCGGTTTCGGGTTCGAGTTCTTCGAGTTGTATTCCTGCTCTGGTTTATAAATATATATTTATGTGTTTGCTTCACTATTCAATGACCCTTGTTCCAGATGGAAGCCACTCTTACATTTTCCGGCAGCAGGAGAAACATCTTGGTGAGTGATTATGAAACTAAAACTAGATAGTCAAGTTCTATTCAACCATAAGTCAAGTCCTTATAGAGGGTGGAAACAATAAAAGATCTGTGATCTTGAGATTACAATGAACAGATTCTCAAAGCAGTACTATACTGCTACTTTCCATCCTCATGTATGAAATAGATATTTAGTTATCTTTGTCCTCGACGTACTTTTATCCAATATTTTTAAATAATGGTGTGTCTACATGTCCGTGTTTGTGCTTCTTGGTTTCAATATATTAATTGATCAGTAGTTTGCTTCAATACCATGTTCTTTTTTTGGAATGAAATCAGATTGGATGAGGATTGGGGCATTTTTCATGGAATCTTCAGTAGCACTCCTATCAGAAAGGCTAAGCCACCAAATGAAAATCCCAAAACAGGATTCAAATGATAACACATTGGAGTCCGGTTGTTGTGTCTTGAACAATGTTAAAACTGGGATCTGGATAGCTGGTAGATTCAATGCTTTTGTCATATTCTTTCAATTCTTTTCATAACTTGATACTCTTATTTACCTATTTCTATAAATAAACTTATAGTCTAAATGGACTAATGTGACAGATCTACAGCTTGTTCGTTGTCCCGTTTGCGACCTGAATACATGTGATGGTAGGCATCCCATGTAAACATTTTGCATGCTAATAAAATGTTGGAACCTTATTATATTTCAATTTCTTGCAAGATCTTAGACTGCAGTTGTACCATTCAAGTAATTGGAAATGCCATACTATGTCTAAAAGAATTGGTGGATTATAGGCTTATTCACTTCCTAATAGAAAATTCATTTTATTTTGATTTATACTTTAGAAAAATAGGTGAAACTTAGTACATACCCTAATCATCTGCTACTCAAGTTCATTGCTGATAAAATAGTTTTAACACCCCAAACATGAATTCAATCTACAAACATCATTGAGAACCCAATCTGTAAAAAGAATATACAGTTGATGTATATCTTCAGAAAATTACTTTATCAGGCCAAACAAGTTTACTGATAAAAAGTTTACATAAAAAATCAATATGAAGAGTTATTGATCTATAATTTCTTGGTTCTTGCTTAAATTCACAATATTATTATGTAGGAACAATGCAAACATTGGATGCTAGGCACATAGAACTGTTCCTGAGTGAAGGTTACCAAAATGGTAATTTGGAATATCAGACTGTAGGTTCTCATGATATCAAGAAGCATACAGAATCAGCTTCTGGGGCCATTTTTGATGTAAAGCACCTGAAAGACTCTTCAACCTCTGGTATATTCACACCCTCTCTATACTGAAAATGTTACTGTCCTATTATTGCAAGATGCTTGTGAAAATAATTTATTGCATAAGCAGGAATAGTTTACTCTTTACTCTCAGATCCGCTTGATAACCATTTGGTTTTTGAATCTAAGCTTGTTGTCGCTGAAATTCTCTACGAAGAATTTCATCTTCCATCAAAGAAGTTAACCGAATTTAAAAAAACCAAAACAAGTTTTTGGAAACTACTTTTTTTAGTTTTCAAATTTTAGTTTGGTTTTTAAAAACATAGGTAGAAAGTAGTCATCAATTGAGTCCCCAAGGGGCAACCCAACGGTTGAGACTGTGAACTTCAAAGCATGCTTCTTCGAGAAATCACTGGTTCGAAACCGCTGAAAAGTGCTTAAACTAGATTACCCTTCAAAGTATCCCGGTGCCACAGTCTAGGGACGGGCCAATGGTGCCCCGGGTATAGGGGAGCGAAGTTCCGATTTTCCGGTTTTCAAAAAAGTAGTTATCAATCGAAGTAAGGAAAATCAAGATTGGAGTAGTTGTTATAGGCTTAATTTTCAAAAACCAAAAGCCAAATCATTATCAAACGGGGCTAAGGATCCGGGAAAATTGTTGTTAATACTCTAGCCTGTGACAGCACTATATTAATCAATGAAATTCTTGAACTATTTCTCCTTGAAGAAAATACTGCACACTTTTAGCTGGAAATAGTATGATGACATAAAGGGATGCTTATTTTCTTTCTTTAGCTACAAGTTGTAATCATATGGAGCAAGTTGTGTTTCAGCATGAGTTGGTCATCGGTTCGCCTTTCTCTATTTATTTTATTTTGCACATAGTTGAAAAGTTATGTTTAAAACATACTAAATTGCTATACTTAGCTTCCTAATGATTTAGCATGTTAGAACACAATATATGATTTCAAATTCTTGAACCTCTGTTAAGTTTTTAGATGTTAGATACATATATTATTATATGTGAGAGTTCTAATATGAGCTGTATGAGCTGATTAATAAGCTATCTAAGGAATATTTTTGGTATTAATCAGAGAGTTTATGTTATAAATTGTAGGAATTTTTTGGATAAATCAATCTAGGCTGGATTGATTACAGGAGAGATATAGACCTAGTTATTGTTACTGTTTTCATTGATATCTTAGCATTATATGACATGGTTCTATGACTAAAAAAATAATGAGATATTTTGGAAGGTTTAATTATGAACAATATAATGAGTTTTGTCCTAAATGGATTGACAGGATTACTAGATCTAAAAACATGGACAGGAAATCGAACTGATTGGCAACCAAAGGCAATGATTACTCTCAACGCAGTTGCTGTTAATACCTATTTACAAGACAATGATGGTAAATCTGCTCCCTCTTTTATAGCATTAGTTTGATAATATGACGTTAAAAGTAGTAAAAAGTTCTTTTAATCCATTAAAAAATATTTTTAAATGTTTTTATTAGCGTAGGTTCTAACTCAGTAGCAATTTTGGAAATTCAGAAAATACTAAAATATTTTTTAAAAAATAATTAATTAGTGTTCTTACAGGTGAAAAATGGGTTTTTTTTACTTTAAGTGCTACATGTGTATTTGGGAATACTTTTAAAGTGAGTGATTTTAACTACCACTTTAGCCAAAAACATTATGAACCTGATATTTTAATAATGAGAAAAGTGTTTTAAGCTATGTAAAAAACATTCTTAGAACCAATAAGAGCATATCTTTATCAGTATCACGTACAACTTAATAGTCAAGAGATTACATATTCTAGTCTCTCAACCTCTAAATATTGTTGAAACTAAAGAAAACCTTCTTAGATGAAGTCCAAACTTCTACCATGTAAATGGGGAAACTGAAAGAGTTTGTAGTTGAATCGATTCTTTCCTAATTTCTTCTTGTGATTTGTTGTACTTATACTCATACCATCTACAATGCTCGATGCACGTATTCGTTTTTTCCATGTTTAAACTAAACCGACAATTAGGCTAAGGAAGCAACGGAAAGCTTCTACAAAGACGGATACACTTGCCTTATTAATATTAGCATAGTATAGACTCTTCTTGTGATCTGCTAGACTTATGCTCGTACCATTTACAATGCTCGATGCTCGTATTTGTTTTTTCCACGATTAAACTAAACCGACAATTAGACTAAGGAGGAAACTGAAAGCTTCTAAAAGACGGATACTCTCATTATATTCAAACTCATAGAACGAGTATATGAGCGCATAATCTAGAAGAATCGAAAGCGTGCGTGTATCGAGGATTCCTTTCCACTCGTGTTATTAATATTAGCACAGTGTAACTGTTTGGTTGATATTGTGGTGCAGGAGTTCATGTGAAATACCAGGCCATGAGAGACGGAGCAAACGGGGAGGTGGTTTCTATCAGAATCTCTCAACAGCTTCTCTAA

mRNA sequence

ATGGGGAAGAAACTGAGCATTTCCTCAGCGCGAGATCGAGTGGTGACGAGATCTCAATCCATTTCCATGGAGCGTGAGAATTCGTCGAAGCGATCGTCGTCGCAAACTCCAGTTGCTGCTGCAGAGCCGGAAGGAATGGTGAAGCGAATGCGAAGAGAAATCTTGCCGATTCATTCTTGCAGCTCTCCTCGTTCCGCTTTTCTCACTGCGCATTCCTCTGCATCTTCGTCTTCCTGCTGGTATTACGCGGATGTGTGGACAGAGGTGGCGAAGTTTCTGGATGGAAGATCTTTGATGATGCTTGCGGCAACTAGCCGGTGGTTTTACCGCTTAGTCATGGAGGACAGTATATGGAAGTATGTTTGCCTCCGTGATCTTCAAGTCCCTGCTTCTCAACACACGTCCTTCAAATGGATCAAACTTTACGTTTCTGCCTTCGATGGAAGCCACTCTTACATTTTCCGGCAGCAGGAGAAACATCTTGATTGGATGAGGATTGGGGCATTTTTCATGGAATCTTCAGTAGCACTCCTATCAGAAAGGCTAAGCCACCAAATGAAAATCCCAAAACAGGATTCAAATGATAACACATTGGAGTCCGGTTGTTGTGTCTTGAACAATGTTAAAACTGGGATCTGGATAGCTGGAACAATGCAAACATTGGATGCTAGGCACATAGAACTGTTCCTGAGTGAAGGTTACCAAAATGGTAATTTGGAATATCAGACTGTAGGTTCTCATGATATCAAGAAGCATACAGAATCAGCTTCTGGGGCCATTTTTGATGTAAAGCACCTGAAAGACTCTTCAACCTCTGGATTACTAGATCTAAAAACATGGACAGGAAATCGAACTGATTGGCAACCAAAGGCAATGATTACTCTCAACGCAGTTGCTGTTAATACCTATTTACAAGACAATGATGGAGTTCATGTGAAATACCAGGCCATGAGAGACGGAGCAAACGGGGAGGTGGTTTCTATCAGAATCTCTCAACAGCTTCTCTAA

Coding sequence (CDS)

ATGGGGAAGAAACTGAGCATTTCCTCAGCGCGAGATCGAGTGGTGACGAGATCTCAATCCATTTCCATGGAGCGTGAGAATTCGTCGAAGCGATCGTCGTCGCAAACTCCAGTTGCTGCTGCAGAGCCGGAAGGAATGGTGAAGCGAATGCGAAGAGAAATCTTGCCGATTCATTCTTGCAGCTCTCCTCGTTCCGCTTTTCTCACTGCGCATTCCTCTGCATCTTCGTCTTCCTGCTGGTATTACGCGGATGTGTGGACAGAGGTGGCGAAGTTTCTGGATGGAAGATCTTTGATGATGCTTGCGGCAACTAGCCGGTGGTTTTACCGCTTAGTCATGGAGGACAGTATATGGAAGTATGTTTGCCTCCGTGATCTTCAAGTCCCTGCTTCTCAACACACGTCCTTCAAATGGATCAAACTTTACGTTTCTGCCTTCGATGGAAGCCACTCTTACATTTTCCGGCAGCAGGAGAAACATCTTGATTGGATGAGGATTGGGGCATTTTTCATGGAATCTTCAGTAGCACTCCTATCAGAAAGGCTAAGCCACCAAATGAAAATCCCAAAACAGGATTCAAATGATAACACATTGGAGTCCGGTTGTTGTGTCTTGAACAATGTTAAAACTGGGATCTGGATAGCTGGAACAATGCAAACATTGGATGCTAGGCACATAGAACTGTTCCTGAGTGAAGGTTACCAAAATGGTAATTTGGAATATCAGACTGTAGGTTCTCATGATATCAAGAAGCATACAGAATCAGCTTCTGGGGCCATTTTTGATGTAAAGCACCTGAAAGACTCTTCAACCTCTGGATTACTAGATCTAAAAACATGGACAGGAAATCGAACTGATTGGCAACCAAAGGCAATGATTACTCTCAACGCAGTTGCTGTTAATACCTATTTACAAGACAATGATGGAGTTCATGTGAAATACCAGGCCATGAGAGACGGAGCAAACGGGGAGGTGGTTTCTATCAGAATCTCTCAACAGCTTCTCTAA

Protein sequence

MGKKLSISSARDRVVTRSQSISMERENSSKRSSSQTPVAAAEPEGMVKRMRREILPIHSCSSPRSAFLTAHSSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKYVCLRDLQVPASQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVALLSERLSHQMKIPKQDSNDNTLESGCCVLNNVKTGIWIAGTMQTLDARHIELFLSEGYQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTWTGNRTDWQPKAMITLNAVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL

Homology

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BLAST of Sed0003230 vs. NCBI nr
Match: XP_004140675.1 (probable F-box protein At3g61730 [Cucumis sativus] >KGN46347.1 hypothetical protein Csa_005078 [Cucumis sativus])

HSP 1 Score: 586.6 bits (1511), Expect = 1.3e-163
Identity = 302/355 (85.07%), Postives = 317/355 (89.30%), Query Frame = 0


Query: 1   MGKKLSISSARDRVVTRSQSISMERENSSKRSSSQTPVAAAEPEGMVKRMRREILPIHSC 60
           MGKKLSI+SARDRVVTRSQSISMER   +KRSS + PV AAEPEGMVKRMRR+I PIHSC
Sbjct: 1   MGKKLSIASARDRVVTRSQSISMERAKMTKRSSPKNPVVAAEPEGMVKRMRRDIKPIHSC 60

Query: 61  SSPRSAFLTAH----SSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDS 120
           SSPRSAFLTAH    SSASSSSCWY ADVWTEVAKFLDGRSLMMLAATSRWFYR VMEDS
Sbjct: 61  SSPRSAFLTAHSSASSSASSSSCWYDADVWTEVAKFLDGRSLMMLAATSRWFYRSVMEDS 120

Query: 121 IWKYVCLRDLQVPASQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVA 180
           IWKYVCLRDLQVPA QHT+FKWIKLYVSAFDGSHSYIFRQ EKHLDWMRIGAFF++SSVA
Sbjct: 121 IWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFRQPEKHLDWMRIGAFFLDSSVA 180

Query: 181 LLSERLSHQMKIPKQDSNDNTLESGCCVLNNVKTGIWIA----------------GTMQT 240
           LLSERL  QMKIPKQDS DNTLESGCCVL+NVKTGIWIA                GTMQT
Sbjct: 181 LLSERLGSQMKIPKQDSTDNTLESGCCVLHNVKTGIWIADLQLVRCPVCDLNTCDGTMQT 240

Query: 241 LDARHIELFLSEGYQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTW 300
           LDARHIELFL+EGYQ+G+ EYQ VGSHDI+K TESASGAIFDVKHL+DSSTSGLLDLK+W
Sbjct: 241 LDARHIELFLNEGYQDGSWEYQIVGSHDIRKPTESASGAIFDVKHLEDSSTSGLLDLKSW 300

Query: 301 TGNRTDWQPKAMITLNAVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
           TGNRTDWQPKAMITLNAVAVNTYLQDN+GVHVKYQAMR GANGEVVSIRISQQLL
Sbjct: 301 TGNRTDWQPKAMITLNAVAVNTYLQDNEGVHVKYQAMRAGANGEVVSIRISQQLL 355

[Close]

BLAST of Sed0003230 vs. NCBI nr
Match: KAG6575300.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 585.1 bits (1507), Expect = 3.8e-163
Identity = 296/339 (87.32%), Postives = 314/339 (92.63%), Query Frame = 0


Query: 1   MGKKLSISSARDRVVTRSQSISMERENSSKRSSSQTPVAAAEPEGMVKRMRREILPIHSC 60
           MGKKLSI+SARDRVVTRSQSI+MERE   K SSS  PV A EPEGMVKRMRR+I PIHSC
Sbjct: 1   MGKKLSIASARDRVVTRSQSIAMERE---KISSSPNPVVAVEPEGMVKRMRRDIKPIHSC 60

Query: 61  SSPRSAFLTAH----SSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDS 120
           SSPRS FLTAH    SSASSS+CWY ADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDS
Sbjct: 61  SSPRSTFLTAHSSASSSASSSACWYDADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDS 120

Query: 121 IWKYVCLRDLQVPASQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVA 180
           IWKYVCLRDLQVPA QHT+FKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFM+SSV 
Sbjct: 121 IWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMDSSVV 180

Query: 181 LLSERLSHQMKIPKQDSNDNTLESGCCVLNNVKTGIWIAGTMQTLDARHIELFLSEGYQN 240
           LLSERL  Q+KIPKQDS DNTLESGCC+L NVKTGIWIAGTMQTLDARHIELFL+EGYQ+
Sbjct: 181 LLSERLGSQVKIPKQDSMDNTLESGCCILRNVKTGIWIAGTMQTLDARHIELFLNEGYQD 240

Query: 241 GNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTWTGNRTDWQPKAMITLN 300
           G+ EYQ +GSHDI+K TESASGAIFDVKHLKDSSTSG+LDLK+WTG+RTDWQPKAMITLN
Sbjct: 241 GSWEYQILGSHDIRKPTESASGAIFDVKHLKDSSTSGILDLKSWTGSRTDWQPKAMITLN 300

Query: 301 AVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
           AVAVNTYLQDN+GVHVKYQAM+ GANGEVVSIRISQQLL
Sbjct: 301 AVAVNTYLQDNEGVHVKYQAMKAGANGEVVSIRISQQLL 336

[Close]

BLAST of Sed0003230 vs. NCBI nr
Match: XP_023548391.1 (probable F-box protein At3g61730 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 576.2 bits (1484), Expect = 1.8e-160
Identity = 297/355 (83.66%), Postives = 315/355 (88.73%), Query Frame = 0


Query: 1   MGKKLSISSARDRVVTRSQSISMERENSSKRSSSQTPVAAAEPEGMVKRMRREILPIHSC 60
           MGKKLSI+SARDRVVTRSQSI+MERE   K SSS  PV A EPEGMVKRMRR+I PIHSC
Sbjct: 1   MGKKLSIASARDRVVTRSQSIAMERE---KISSSPNPVVAVEPEGMVKRMRRDIKPIHSC 60

Query: 61  SSPRSAFLTAH----SSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDS 120
           SSPRS FLTAH    SSASSS+CWY ADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDS
Sbjct: 61  SSPRSTFLTAHSSASSSASSSACWYDADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDS 120

Query: 121 IWKYVCLRDLQVPASQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVA 180
           IWKYVCLRDLQVPA QHT+FKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFM+SSV 
Sbjct: 121 IWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMDSSVV 180

Query: 181 LLSERLSHQMKIPKQDSNDNTLESGCCVLNNVKTGIWIA----------------GTMQT 240
           LLSERL  Q+KIPKQDS DNTLESGCCVL+NVKTGIWIA                GTMQT
Sbjct: 181 LLSERLGSQVKIPKQDSTDNTLESGCCVLHNVKTGIWIADLQLVRCPVCDLNTCDGTMQT 240

Query: 241 LDARHIELFLSEGYQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTW 300
           LDARHIELFL+EGYQ+G+ EYQ +GSHDI+K TESASGAIFDVKHLKDSSTSG+LDLK+W
Sbjct: 241 LDARHIELFLNEGYQDGSWEYQILGSHDIRKPTESASGAIFDVKHLKDSSTSGILDLKSW 300

Query: 301 TGNRTDWQPKAMITLNAVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
           TG+RTDWQPKAMITLNAVAVNTYLQDN+GVHVKYQAM+ GANGEVVSIRISQQLL
Sbjct: 301 TGSRTDWQPKAMITLNAVAVNTYLQDNEGVHVKYQAMKAGANGEVVSIRISQQLL 352

[Close]

BLAST of Sed0003230 vs. NCBI nr
Match: XP_038875515.1 (probable F-box protein At3g61730 [Benincasa hispida])

HSP 1 Score: 574.3 bits (1479), Expect = 6.8e-160
Identity = 298/355 (83.94%), Postives = 315/355 (88.73%), Query Frame = 0


Query: 1   MGKKLSISSARDRVVTRSQSISMERENSSKRSSSQTPVAAAEPEGMVKRMRREILPIHSC 60
           MGKKLSI+SARDRVVTRS SI+MER   SKRSS  + V AAEPEG VKRMRR+I PIHSC
Sbjct: 1   MGKKLSIASARDRVVTRSLSIAMERAKMSKRSSPNS-VVAAEPEGTVKRMRRDIKPIHSC 60

Query: 61  SSPRSAFLTAH----SSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDS 120
           SSPRSAFLTAH    SSASSSSCWY ADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDS
Sbjct: 61  SSPRSAFLTAHSSASSSASSSSCWYDADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDS 120

Query: 121 IWKYVCLRDLQVPASQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVA 180
           IWKYVCLRDLQVPA QHT+FKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFF++SSVA
Sbjct: 121 IWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFLDSSVA 180

Query: 181 LLSERLSHQMKIPKQDSNDNTLESGCCVLNNVKTGIWIA----------------GTMQT 240
           LLSERL  QMKIPKQDS D TLESGCCVL+NVKTGIWIA                GTMQT
Sbjct: 181 LLSERLGSQMKIPKQDSTDKTLESGCCVLHNVKTGIWIADLQLVRCPVCDLNTCDGTMQT 240

Query: 241 LDARHIELFLSEGYQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTW 300
           LDARHIELFL+EGYQ+G+ EYQ VGSHDI+K TESASGAIFDVKHLKDSSTSG+LDLK+W
Sbjct: 241 LDARHIELFLNEGYQDGSWEYQIVGSHDIRKPTESASGAIFDVKHLKDSSTSGILDLKSW 300

Query: 301 TGNRTDWQPKAMITLNAVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
           TG+RTDWQPKAMITLNAVAVNTYLQDN+GVHVKYQAM+ GANGEVVSIRISQQLL
Sbjct: 301 TGSRTDWQPKAMITLNAVAVNTYLQDNEGVHVKYQAMKAGANGEVVSIRISQQLL 354

[Close]

BLAST of Sed0003230 vs. NCBI nr
Match: TYK24589.1 (putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 568.5 bits (1464), Expect = 3.7e-158
Identity = 295/356 (82.87%), Postives = 312/356 (87.64%), Query Frame = 0


Query: 1   MGKKLSISSARDRVVTRSQSISMERENSSKRSS-SQTPVAAAEPEGMVKRMRREILPIHS 60
           M KKLSI+SARDRVVTRSQSISMER   SKRSS    PV AAEPEGMVKRMRR+I PIHS
Sbjct: 1   MAKKLSIASARDRVVTRSQSISMERAKMSKRSSPKNNPVVAAEPEGMVKRMRRDIKPIHS 60

Query: 61  CSSPRSAFLTAH----SSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMED 120
           CSSP SAFLTAH    SSASSSSCWY ADVWTEVAKFLDGRSLMMLAATSRWFYRLVMED
Sbjct: 61  CSSPHSAFLTAHSSASSSASSSSCWYDADVWTEVAKFLDGRSLMMLAATSRWFYRLVMED 120

Query: 121 SIWKYVCLRDLQVPASQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSV 180
           SIWKYVCLRDLQVPA QHT+FKWIKLYVSAFDGSHSYIFRQ EKHLDWMRIGAFF++SSV
Sbjct: 121 SIWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFRQPEKHLDWMRIGAFFLDSSV 180

Query: 181 ALLSERLSHQMKIPKQDSNDNTLESGCCVLNNVKTGIWIA----------------GTMQ 240
           ALLSERL  QMK+PKQ S  NTLESGCCVL+NVKTGIWIA                GTMQ
Sbjct: 181 ALLSERLGSQMKVPKQGSTANTLESGCCVLHNVKTGIWIADLQLVRCPVCDLNTCDGTMQ 240

Query: 241 TLDARHIELFLSEGYQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKT 300
           TLDARHIELFL+EGYQ+G+ EYQ VGSHDI+K TESASGAIFDVKHL+DSSTSG+LDLK+
Sbjct: 241 TLDARHIELFLNEGYQDGSWEYQIVGSHDIRKPTESASGAIFDVKHLEDSSTSGILDLKS 300

Query: 301 WTGNRTDWQPKAMITLNAVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
           WTG+R DWQPKAMITL+AVAVNTYLQDN+GVHVKYQAMR GANGEVVSIRISQQLL
Sbjct: 301 WTGSRADWQPKAMITLSAVAVNTYLQDNEGVHVKYQAMRAGANGEVVSIRISQQLL 356

[Close]

BLAST of Sed0003230 vs. ExPASy Swiss-Prot
Match: Q9M365 (Probable F-box protein At3g61730 OS=Arabidopsis thaliana OX=3702 GN=RMF PE=1 SV=2)

HSP 1 Score: 330.1 bits (845), Expect = 2.9e-89
Identity = 168/342 (49.12%), Postives = 236/342 (69.01%), Query Frame = 0


Query: 11  RDRVVTRSQSISMERENSSKRSSSQTPVAAAEPEGMVKRMRREILPIHSCSSPRSAFLTA 70
           R  V +  Q   ++RE    R+  +   ++ +  G + R       I  C SPR +  T 
Sbjct: 29  RKLVQSNEQKNDIQREEDG-RAKRRIVQSSDQKNGKILR------GIRGCVSPRCSAQTY 88

Query: 71  HSSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKYVCLRDLQVPA 130
            S  S    WY  D+WT +++FLDG+SL+ L AT++WFY++ MED++W++ CLRDLQVP 
Sbjct: 89  QSRFS----WYEQDIWTYISRFLDGKSLVKLGATNKWFYKIAMEDTVWRFACLRDLQVPV 148

Query: 131 SQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVALLSERLSHQMKIPK 190
               S  WIK+Y SAFDGSHSY+FRQ+EKH+DWMRIGAF ++S  +LL+E LS ++K P+
Sbjct: 149 PFPVSSTWIKIYASAFDGSHSYLFRQKEKHIDWMRIGAFVLDSRTSLLTESLSGRLKFPR 208

Query: 191 QDSNDNTLE-SGCCVLNNVKTGIWIA----------------GTMQTLDARHIELFLSEG 250
           + + +  L+ SG C++N++K+GIWIA                GTMQTLDARHIELFLSEG
Sbjct: 209 EGTIERMLQSSGSCLINDIKSGIWIADLQLVRCPVCDLSTCDGTMQTLDARHIELFLSEG 268

Query: 251 YQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTWTGNRTDWQPKAMI 310
           Y++G+ +Y  +GSH ++K+  +A GAIFD+KHLK+SS SG+L+LK+WTG   D QPKA+I
Sbjct: 269 YKDGSWDYNLIGSHKLQKNASAACGAIFDLKHLKESSYSGILNLKSWTGESNDSQPKAVI 328

Query: 311 TLNAVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
             +AVAV+T LQ+N+G+ VKY  M+ G +G++VSIRISQQLL
Sbjct: 329 APHAVAVHTRLQENEGILVKYHTMKAGTDGDIVSIRISQQLL 359

[Close]

BLAST of Sed0003230 vs. ExPASy Swiss-Prot
Match: Q9FGB8 (Probable F-box protein At5g36000 OS=Arabidopsis thaliana OX=3702 GN=At5g36000 PE=2 SV=2)

HSP 1 Score: 326.2 bits (835), Expect = 4.2e-88
Identity = 165/345 (47.83%), Postives = 234/345 (67.83%), Query Frame = 0


Query: 8   SSARDRVVTRSQSISMERENSSKRSSSQTPVAAAEPEGMVKRMRREILPIHSCSSPRSAF 67
           +  + R + +S  I  + +  +KR   Q   ++ +  G + R       IH C SPR + 
Sbjct: 24  NGGQKRKLVQSNDIQRDEDGGAKRRIIQ---SSDQKNGKILR------GIHGCVSPRCSA 83

Query: 68  LTAHSSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKYVCLRDLQ 127
            T  S  S    WY  D+WT + +FLDG+SL+ L AT++WFY++ MED++W++ CLRDLQ
Sbjct: 84  PTYQSRFS----WYEQDIWTYITRFLDGKSLVKLGATNKWFYKIAMEDTVWRFACLRDLQ 143

Query: 128 VPASQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVALLSERLSHQMK 187
           VP +   S  WIK+Y SAFDGSHSY+F Q+EKH+DWMR+GAF ++S  + L+E LS ++K
Sbjct: 144 VPETFPVSSTWIKIYASAFDGSHSYLFHQKEKHIDWMRLGAFVLDSRTSFLTESLSGRLK 203

Query: 188 IPKQDSNDNTLE-SGCCVLNNVKTGIWIA----------------GTMQTLDARHIELFL 247
           +P + + +  L+ SG C++N++K+GIWIA                GTMQTLD RHIELFL
Sbjct: 204 VPTEGTIEQMLQSSGSCLINDIKSGIWIADLQLLRCPLCDLSTCDGTMQTLDVRHIELFL 263

Query: 248 SEGYQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTWTGNRTDWQPK 307
           SEGY++G+ +Y  +GSH ++K   +A GAIFD+KHLK SS+SG+L+LK+WTG   D QPK
Sbjct: 264 SEGYKDGSWDYNLIGSHKLEKDASAACGAIFDLKHLKKSSSSGILNLKSWTGEADDSQPK 323

Query: 308 AMITLNAVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
           A+I  +AVAV+T LQ N+G+ VKY  M+ G +G++VSIRISQQLL
Sbjct: 324 AVIAPHAVAVHTRLQQNEGILVKYHTMKAGTDGDIVSIRISQQLL 355

[Close]

BLAST of Sed0003230 vs. ExPASy TrEMBL
Match: A0A0A0KD88 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087760 PE=4 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 6.4e-164
Identity = 302/355 (85.07%), Postives = 317/355 (89.30%), Query Frame = 0


Query: 1   MGKKLSISSARDRVVTRSQSISMERENSSKRSSSQTPVAAAEPEGMVKRMRREILPIHSC 60
           MGKKLSI+SARDRVVTRSQSISMER   +KRSS + PV AAEPEGMVKRMRR+I PIHSC
Sbjct: 1   MGKKLSIASARDRVVTRSQSISMERAKMTKRSSPKNPVVAAEPEGMVKRMRRDIKPIHSC 60

Query: 61  SSPRSAFLTAH----SSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDS 120
           SSPRSAFLTAH    SSASSSSCWY ADVWTEVAKFLDGRSLMMLAATSRWFYR VMEDS
Sbjct: 61  SSPRSAFLTAHSSASSSASSSSCWYDADVWTEVAKFLDGRSLMMLAATSRWFYRSVMEDS 120

Query: 121 IWKYVCLRDLQVPASQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVA 180
           IWKYVCLRDLQVPA QHT+FKWIKLYVSAFDGSHSYIFRQ EKHLDWMRIGAFF++SSVA
Sbjct: 121 IWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFRQPEKHLDWMRIGAFFLDSSVA 180

Query: 181 LLSERLSHQMKIPKQDSNDNTLESGCCVLNNVKTGIWIA----------------GTMQT 240
           LLSERL  QMKIPKQDS DNTLESGCCVL+NVKTGIWIA                GTMQT
Sbjct: 181 LLSERLGSQMKIPKQDSTDNTLESGCCVLHNVKTGIWIADLQLVRCPVCDLNTCDGTMQT 240

Query: 241 LDARHIELFLSEGYQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTW 300
           LDARHIELFL+EGYQ+G+ EYQ VGSHDI+K TESASGAIFDVKHL+DSSTSGLLDLK+W
Sbjct: 241 LDARHIELFLNEGYQDGSWEYQIVGSHDIRKPTESASGAIFDVKHLEDSSTSGLLDLKSW 300

Query: 301 TGNRTDWQPKAMITLNAVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
           TGNRTDWQPKAMITLNAVAVNTYLQDN+GVHVKYQAMR GANGEVVSIRISQQLL
Sbjct: 301 TGNRTDWQPKAMITLNAVAVNTYLQDNEGVHVKYQAMRAGANGEVVSIRISQQLL 355

[Close]

BLAST of Sed0003230 vs. ExPASy TrEMBL
Match: A0A5D3DMQ8 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001350 PE=4 SV=1)

HSP 1 Score: 568.5 bits (1464), Expect = 1.8e-158
Identity = 295/356 (82.87%), Postives = 312/356 (87.64%), Query Frame = 0


Query: 1   MGKKLSISSARDRVVTRSQSISMERENSSKRSS-SQTPVAAAEPEGMVKRMRREILPIHS 60
           M KKLSI+SARDRVVTRSQSISMER   SKRSS    PV AAEPEGMVKRMRR+I PIHS
Sbjct: 1   MAKKLSIASARDRVVTRSQSISMERAKMSKRSSPKNNPVVAAEPEGMVKRMRRDIKPIHS 60

Query: 61  CSSPRSAFLTAH----SSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMED 120
           CSSP SAFLTAH    SSASSSSCWY ADVWTEVAKFLDGRSLMMLAATSRWFYRLVMED
Sbjct: 61  CSSPHSAFLTAHSSASSSASSSSCWYDADVWTEVAKFLDGRSLMMLAATSRWFYRLVMED 120

Query: 121 SIWKYVCLRDLQVPASQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSV 180
           SIWKYVCLRDLQVPA QHT+FKWIKLYVSAFDGSHSYIFRQ EKHLDWMRIGAFF++SSV
Sbjct: 121 SIWKYVCLRDLQVPAPQHTAFKWIKLYVSAFDGSHSYIFRQPEKHLDWMRIGAFFLDSSV 180

Query: 181 ALLSERLSHQMKIPKQDSNDNTLESGCCVLNNVKTGIWIA----------------GTMQ 240
           ALLSERL  QMK+PKQ S  NTLESGCCVL+NVKTGIWIA                GTMQ
Sbjct: 181 ALLSERLGSQMKVPKQGSTANTLESGCCVLHNVKTGIWIADLQLVRCPVCDLNTCDGTMQ 240

Query: 241 TLDARHIELFLSEGYQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKT 300
           TLDARHIELFL+EGYQ+G+ EYQ VGSHDI+K TESASGAIFDVKHL+DSSTSG+LDLK+
Sbjct: 241 TLDARHIELFLNEGYQDGSWEYQIVGSHDIRKPTESASGAIFDVKHLEDSSTSGILDLKS 300

Query: 301 WTGNRTDWQPKAMITLNAVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
           WTG+R DWQPKAMITL+AVAVNTYLQDN+GVHVKYQAMR GANGEVVSIRISQQLL
Sbjct: 301 WTGSRADWQPKAMITLSAVAVNTYLQDNEGVHVKYQAMRAGANGEVVSIRISQQLL 356

[Close]

BLAST of Sed0003230 vs. ExPASy TrEMBL
Match: A0A6J1DCT6 (probable F-box protein At3g61730 OS=Momordica charantia OX=3673 GN=LOC111019845 PE=4 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 2.0e-149
Identity = 284/354 (80.23%), Postives = 306/354 (86.44%), Query Frame = 0


Query: 1   MGKKLSISSARDRVVTRSQSISMERENSSKRSSSQTPVAAAEPEG-MVKRMRREILP--I 60
           MGKKLSISSARDRVVTRSQS +MERE  SKRS    P+AAAEPEG M KR+RR++    I
Sbjct: 1   MGKKLSISSARDRVVTRSQSSAMERERLSKRS----PIAAAEPEGVMAKRIRRDVKHPII 60

Query: 61  HSCSSPRSAFLTAHSSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSI 120
           H CSSPRSAFLT    ASSSSCWY ADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSI
Sbjct: 61  HPCSSPRSAFLT----ASSSSCWYDADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSI 120

Query: 121 WKYVCLRDLQVPASQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVAL 180
           WKYVCLRDLQV A Q T+FKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAF M+SSVAL
Sbjct: 121 WKYVCLRDLQVSAPQITAFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFSMDSSVAL 180

Query: 181 LSERLSHQMKIPKQDSNDNTLESGCCVLNNVKTGIWIA----------------GTMQTL 240
           LSERL  Q+KIPKQDS DN LESGCCVL+NVKTGIWIA                GTMQTL
Sbjct: 181 LSERLGSQVKIPKQDSKDNMLESGCCVLHNVKTGIWIADLQLVRCPVCDLNTCDGTMQTL 240

Query: 241 DARHIELFLSEGYQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTWT 300
           DARHIELFL+EGYQ+G+ +YQ VGSHDI+K TE+ASGAIFDVKHL+DSSTSG+LD++TW+
Sbjct: 241 DARHIELFLNEGYQDGSWDYQIVGSHDIRKPTEAASGAIFDVKHLEDSSTSGILDMQTWS 300

Query: 301 GNRTDWQPKAMITLNAVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
           G RTDWQPKAMITL+AVAVNTYLQDN+GVHVKYQAMR GANGEVVSIRISQQLL
Sbjct: 301 GKRTDWQPKAMITLHAVAVNTYLQDNEGVHVKYQAMRGGANGEVVSIRISQQLL 346

[Close]

BLAST of Sed0003230 vs. ExPASy TrEMBL
Match: A0A1S3CBL0 (probable F-box protein At3g61730 OS=Cucumis melo OX=3656 GN=LOC103498945 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 9.9e-149
Identity = 275/334 (82.34%), Postives = 291/334 (87.13%), Query Frame = 0


Query: 23  MERENSSKRSS-SQTPVAAAEPEGMVKRMRREILPIHSCSSPRSAFLTAH----SSASSS 82
           MER   SKRSS    PV AAEPEGMVKRMRR+I PIHSCSSP SAFLTAH    SSASSS
Sbjct: 1   MERAKMSKRSSPKNNPVVAAEPEGMVKRMRRDIKPIHSCSSPHSAFLTAHSSASSSASSS 60

Query: 83  SCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKYVCLRDLQVPASQHTSFK 142
           SCWY ADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKYVCLRDLQVPA QHT+FK
Sbjct: 61  SCWYDADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQHTAFK 120

Query: 143 WIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVALLSERLSHQMKIPKQDSNDNT 202
           WIKLYVSAFDGSHSYIFRQ EKHLDWMRIGAFF++SSVALLSERL  QMK+PKQ S  NT
Sbjct: 121 WIKLYVSAFDGSHSYIFRQPEKHLDWMRIGAFFLDSSVALLSERLGSQMKVPKQGSTANT 180

Query: 203 LESGCCVLNNVKTGIWIA----------------GTMQTLDARHIELFLSEGYQNGNLEY 262
           LESGCCVL+NVKTGIWIA                GTMQTLDARHIELFL+EGYQ+G+ EY
Sbjct: 181 LESGCCVLHNVKTGIWIADLQLVRCPVCDLNTCDGTMQTLDARHIELFLNEGYQDGSWEY 240

Query: 263 QTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTWTGNRTDWQPKAMITLNAVAVN 322
           Q VGSHDI+K TESASGAIFDVKHL+DSSTSG+LDLK+WTG+R DWQPKAMITL+AVAVN
Sbjct: 241 QIVGSHDIRKPTESASGAIFDVKHLEDSSTSGILDLKSWTGSRADWQPKAMITLSAVAVN 300

Query: 323 TYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
           TYLQDN+GVHVKYQAMR GANGEVVSIRISQQLL
Sbjct: 301 TYLQDNEGVHVKYQAMRAGANGEVVSIRISQQLL 334

[Close]

BLAST of Sed0003230 vs. ExPASy TrEMBL
Match: A0A6J1EVC3 (probable F-box protein At3g61730 OS=Cucurbita moschata OX=3662 GN=LOC111436308 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 5.6e-128
Identity = 231/271 (85.24%), Postives = 245/271 (90.41%), Query Frame = 0


Query: 81  YYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKYVCLRDLQVPASQHTSFKWIK 140
           Y ADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKYVCLRDLQVPA QHT+FKWIK
Sbjct: 11  YDADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQHTAFKWIK 70

Query: 141 LYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVALLSERLSHQMKIPKQDSNDNTLES 200
           LYVSAFDGSHSYIFRQQEKHLDWMRIGAFFM+SSV LLSERL  Q+KIPKQDS DNTLES
Sbjct: 71  LYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMDSSVVLLSERLGSQVKIPKQDSMDNTLES 130

Query: 201 GCCVLNNVKTGIWIA----------------GTMQTLDARHIELFLSEGYQNGNLEYQTV 260
           GCCVL+NVKTGIWIA                GTMQTLDARHIELFL+EGYQ+G+ EYQ +
Sbjct: 131 GCCVLHNVKTGIWIADLQLVRCPVCDLNTCDGTMQTLDARHIELFLNEGYQDGSWEYQIL 190

Query: 261 GSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTWTGNRTDWQPKAMITLNAVAVNTYL 320
           GSHDI+K TESASGAIFDVKHLKDSSTSG+LDLK+WTG+RTDWQPKAMITLNAVAVNTYL
Sbjct: 191 GSHDIRKPTESASGAIFDVKHLKDSSTSGILDLKSWTGSRTDWQPKAMITLNAVAVNTYL 250

Query: 321 QDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
           QDN+GVHVKYQAM+ GANGEVVSIRISQQLL
Sbjct: 251 QDNEGVHVKYQAMKAGANGEVVSIRISQQLL 281

[Close]

BLAST of Sed0003230 vs. TAIR 10
Match: AT5G36000.1 (BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 326.2 bits (835), Expect = 3.0e-89
Identity = 165/345 (47.83%), Postives = 234/345 (67.83%), Query Frame = 0


Query: 8   SSARDRVVTRSQSISMERENSSKRSSSQTPVAAAEPEGMVKRMRREILPIHSCSSPRSAF 67
           +  + R + +S  I  + +  +KR   Q   ++ +  G + R       IH C SPR + 
Sbjct: 24  NGGQKRKLVQSNDIQRDEDGGAKRRIIQ---SSDQKNGKILR------GIHGCVSPRCSA 83

Query: 68  LTAHSSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKYVCLRDLQ 127
            T  S  S    WY  D+WT + +FLDG+SL+ L AT++WFY++ MED++W++ CLRDLQ
Sbjct: 84  PTYQSRFS----WYEQDIWTYITRFLDGKSLVKLGATNKWFYKIAMEDTVWRFACLRDLQ 143

Query: 128 VPASQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVALLSERLSHQMK 187
           VP +   S  WIK+Y SAFDGSHSY+F Q+EKH+DWMR+GAF ++S  + L+E LS ++K
Sbjct: 144 VPETFPVSSTWIKIYASAFDGSHSYLFHQKEKHIDWMRLGAFVLDSRTSFLTESLSGRLK 203

Query: 188 IPKQDSNDNTLE-SGCCVLNNVKTGIWIA----------------GTMQTLDARHIELFL 247
           +P + + +  L+ SG C++N++K+GIWIA                GTMQTLD RHIELFL
Sbjct: 204 VPTEGTIEQMLQSSGSCLINDIKSGIWIADLQLLRCPLCDLSTCDGTMQTLDVRHIELFL 263

Query: 248 SEGYQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTWTGNRTDWQPK 307
           SEGY++G+ +Y  +GSH ++K   +A GAIFD+KHLK SS+SG+L+LK+WTG   D QPK
Sbjct: 264 SEGYKDGSWDYNLIGSHKLEKDASAACGAIFDLKHLKKSSSSGILNLKSWTGEADDSQPK 323

Query: 308 AMITLNAVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
           A+I  +AVAV+T LQ N+G+ VKY  M+ G +G++VSIRISQQLL
Sbjct: 324 AVIAPHAVAVHTRLQQNEGILVKYHTMKAGTDGDIVSIRISQQLL 355

[Close]

BLAST of Sed0003230 vs. TAIR 10
Match: AT3G61730.1 (reduced male fertility )

HSP 1 Score: 312.8 bits (800), Expect = 3.4e-85
Identity = 164/342 (47.95%), Postives = 231/342 (67.54%), Query Frame = 0


Query: 11  RDRVVTRSQSISMERENSSKRSSSQTPVAAAEPEGMVKRMRREILPIHSCSSPRSAFLTA 70
           R  V +  Q   ++RE    R+  +   ++ +  G + R       I  C SPR +  T 
Sbjct: 29  RKLVQSNEQKNDIQREEDG-RAKRRIVQSSDQKNGKILR------GIRGCVSPRCSAQTY 88

Query: 71  HSSASSSSCWYYADVWTEVAKFLDGRSLMMLAATSRWFYRLVMEDSIWKYVCLRDLQVPA 130
            S  S    WY  D+WT +++FLDG+SL+ L AT++WFY++ MED++W++ CLRDLQVP 
Sbjct: 89  QSRFS----WYEQDIWTYISRFLDGKSLVKLGATNKWFYKIAMEDTVWRFACLRDLQVPV 148

Query: 131 SQHTSFKWIKLYVSAFDGSHSYIFRQQEKHLDWMRIGAFFMESSVALLSERLSHQMKIPK 190
               S  WIK+Y SAFDGSHSY+FRQ+EKH     IGAF ++S  +LL+E LS ++K P+
Sbjct: 149 PFPVSSTWIKIYASAFDGSHSYLFRQKEKH-----IGAFVLDSRTSLLTESLSGRLKFPR 208

Query: 191 QDSNDNTLE-SGCCVLNNVKTGIWIA----------------GTMQTLDARHIELFLSEG 250
           + + +  L+ SG C++N++K+GIWIA                GTMQTLDARHIELFLSEG
Sbjct: 209 EGTIERMLQSSGSCLINDIKSGIWIADLQLVRCPVCDLSTCDGTMQTLDARHIELFLSEG 268

Query: 251 YQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTWTGNRTDWQPKAMI 310
           Y++G+ +Y  +GSH ++K+  +A GAIFD+KHLK+SS SG+L+LK+WTG   D QPKA+I
Sbjct: 269 YKDGSWDYNLIGSHKLQKNASAACGAIFDLKHLKESSYSGILNLKSWTGESNDSQPKAVI 328

Query: 311 TLNAVAVNTYLQDNDGVHVKYQAMRDGANGEVVSIRISQQLL 336
             +AVAV+T LQ+N+G+ VKY  M+ G +G++VSIRISQQLL
Sbjct: 329 APHAVAVHTRLQENEGILVKYHTMKAGTDGDIVSIRISQQLL 354

[Close]

BLAST of Sed0003230 vs. TAIR 10
Match: AT3G62500.1 (BEST Arabidopsis thaliana protein match is: SET domain protein 14 (TAIR:AT3G61740.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 145.6 bits (366), Expect = 7.2e-35
Identity = 73/152 (48.03%), Postives = 109/152 (71.71%), Query Frame = 0


Query: 162 DWMRIGAFFMESSVALLSERLSHQMKIPKQDSNDNTLESGCCVLNNVKTGIWIAGTMQTL 221
           DWM IGAF ++S  +LL+E LS ++K+PK+ + +  L+    ++  V        TMQTL
Sbjct: 178 DWMPIGAFVLDSRTSLLTESLSGRLKVPKEGTIERMLQKYLQLVRPVCD----LRTMQTL 237

Query: 222 DARHIELFLSEGYQNGNLEYQTVGSHDIKKHTESASGAIFDVKHLKDSSTSGLLDLKTWT 281
           DARHIELFLSEGY++G+ +Y  +GSH ++K+  +A GAIFD+KH K+SS+SG+L+LK+WT
Sbjct: 238 DARHIELFLSEGYKDGSWDYNLIGSHKLQKNASAACGAIFDLKHHKESSSSGILNLKSWT 297

Query: 282 GNRTDWQPKAMITLNAVAVNTYLQDNDGVHVK 314
           G     QPKA+I  +AVAV+T L++N+   ++
Sbjct: 298 GQPDISQPKAVIAPHAVAVHTRLRENEVAEIQ 325

The following BLAST results are available for this feature:

BLAST of Sed0003230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140675.1	1.3e-163	85.07	probable F-box protein At3g61730 [Cucumis sativus] >KGN46347.1 hypothetical prot...	[more]
KAG6575300.1	3.8e-163	87.32	putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023548391.1	1.8e-160	83.66	probable F-box protein At3g61730 [Cucurbita pepo subsp. pepo]	[more]
XP_038875515.1	6.8e-160	83.94	probable F-box protein At3g61730 [Benincasa hispida]	[more]
TYK24589.1	3.7e-158	82.87	putative F-box protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0003230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M365	2.9e-89	49.12	Probable F-box protein At3g61730 OS=Arabidopsis thaliana OX=3702 GN=RMF PE=1 SV=...	[more]
Q9FGB8	4.2e-88	47.83	Probable F-box protein At5g36000 OS=Arabidopsis thaliana OX=3702 GN=At5g36000 PE...	[more]

BLAST of Sed0003230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD88	6.4e-164	85.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087760 PE=4 SV=1	[more]
A0A5D3DMQ8	1.8e-158	82.87	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A6J1DCT6	2.0e-149	80.23	probable F-box protein At3g61730 OS=Momordica charantia OX=3673 GN=LOC111019845 ...	[more]
A0A1S3CBL0	9.9e-149	82.34	probable F-box protein At3g61730 OS=Cucumis melo OX=3656 GN=LOC103498945 PE=4 SV...	[more]
A0A6J1EVC3	5.6e-128	85.24	probable F-box protein At3g61730 OS=Cucurbita moschata OX=3662 GN=LOC111436308 P...	[more]

BLAST of Sed0003230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36000.1	3.0e-89	47.83	BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G617...	[more]
AT3G61730.1	3.4e-85	47.95	reduced male fertility	[more]
AT3G62500.1	7.2e-35	48.03	BEST Arabidopsis thaliana protein match is: SET domain protein 14 (TAIR:AT3G6174...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 82..161 e-value: 3.4E-6 score: 28.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR47149	F-BOX PROTEIN RMF	coord: 24..335
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 84..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003230.1	Sed0003230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0061458	reproductive system development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0005515	protein binding